Wall clock time and date at job start Fri Apr 10 2020 22:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21275 * 120.00495 * 2 1 4 4 N 1.34780 * 119.99863 * 180.02562 * 2 1 3 5 5 C 1.47487 * 125.59054 * 359.94501 * 4 2 1 6 6 C 1.54326 * 107.03488 * 181.07044 * 5 4 2 7 7 C 1.55157 * 103.10138 * 22.24110 * 6 5 4 8 8 H 1.08995 * 111.00413 * 82.48313 * 7 6 5 9 9 C 1.50700 * 111.00524 * 206.33473 * 7 6 5 10 10 O 1.21276 * 119.99700 * 85.46698 * 9 7 6 11 11 N 1.34773 * 119.99922 * 265.46321 * 9 7 6 12 12 C 1.46925 * 120.63088 * 5.19052 * 11 9 7 13 13 C 1.52755 * 109.00923 * 233.57982 * 12 11 9 14 14 C 1.53040 * 109.38357 * 305.59178 * 13 12 11 15 15 C 1.53004 * 109.44995 * 181.25515 * 14 13 12 16 16 C 1.50697 * 109.47343 * 64.93349 * 15 14 13 17 17 H 1.08005 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00174 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00168 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99670 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.46860 * 90.00827 * 20 18 16 22 22 H 1.48504 * 109.46641 * 210.00476 * 20 18 16 23 23 H 1.48495 * 109.47411 * 330.00513 * 20 18 16 24 24 C 1.53036 * 109.54095 * 61.23781 * 14 13 12 25 25 C 1.46926 * 120.63221 * 185.46495 * 11 9 7 26 26 C 1.47417 * 125.64945 * 179.97438 * 4 2 1 27 27 H 1.08997 * 109.47345 * 239.99845 * 1 2 3 28 28 H 1.09007 * 109.46890 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47690 * 119.99324 * 1 2 3 30 30 H 1.09004 * 110.03309 * 61.71058 * 5 4 2 31 31 H 1.08995 * 109.96415 * 300.39692 * 5 4 2 32 32 H 1.08999 * 110.71888 * 263.78944 * 6 5 4 33 33 H 1.08997 * 110.72196 * 140.69119 * 6 5 4 34 34 H 1.08997 * 109.58814 * 353.41678 * 12 11 9 35 35 H 1.09004 * 109.58793 * 113.84058 * 12 11 9 36 36 H 1.08995 * 109.56507 * 185.55037 * 13 12 11 37 37 H 1.09005 * 109.38421 * 65.51520 * 13 12 11 38 38 H 1.09003 * 109.45511 * 301.21112 * 14 13 12 39 39 H 1.08994 * 109.47207 * 184.93794 * 15 14 13 40 40 H 1.09002 * 109.47052 * 304.93629 * 15 14 13 41 41 H 0.97004 * 120.00427 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.49794 * 178.68780 * 24 14 13 43 43 H 1.08993 * 109.52147 * 58.60266 * 24 14 13 44 44 H 1.08999 * 109.58978 * 246.16225 * 25 11 9 45 45 H 1.09000 * 109.58157 * 6.44559 * 25 11 9 46 46 H 1.09004 * 110.36836 * 37.01177 * 26 4 2 47 47 H 1.08998 * 110.46578 * 274.73181 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5713 -2.5103 0.0000 6 6 2.7279 -3.5317 0.0267 7 6 3.9080 -2.7115 0.6115 8 1 3.8584 -2.6771 1.6998 9 6 5.2316 -3.2652 0.1504 10 8 5.6984 -2.9145 -0.9125 11 7 5.8964 -4.1502 0.9193 12 6 5.2932 -4.6709 2.1537 13 6 6.2610 -4.4454 3.3139 14 6 7.6191 -5.0609 2.9694 15 6 8.5805 -4.8634 4.1432 16 6 8.0818 -5.6367 5.3366 17 1 7.1704 -6.2119 5.2649 18 6 8.7888 -5.6099 6.5200 19 7 8.3538 -6.2852 7.5613 20 14 10.3653 -4.6156 6.6437 21 1 10.0466 -3.2361 7.0914 22 1 11.2785 -5.2557 7.6243 23 1 11.0241 -4.5646 5.3139 24 6 8.1889 -4.3789 1.7235 25 6 7.2407 -4.6080 0.5423 26 6 3.6478 -1.3124 -0.0011 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 0.9743 -2.6497 -0.9012 31 1 0.9462 -2.6349 0.8842 32 1 2.9603 -3.8774 -0.9806 33 1 2.4844 -4.3732 0.6752 34 1 4.3582 -4.1473 2.3526 35 1 5.1006 -5.7382 2.0443 36 1 5.8665 -4.9154 4.2148 37 1 6.3791 -3.3752 3.4838 38 1 7.4963 -6.1266 2.7761 39 1 9.5714 -5.2226 3.8657 40 1 8.6351 -3.8040 4.3938 41 1 8.8514 -6.2667 8.3938 42 1 9.1666 -4.8016 1.4923 43 1 8.2892 -3.3093 1.9074 44 1 7.2101 -5.6700 0.2988 45 1 7.5891 -4.0445 -0.3233 46 1 4.1060 -0.5379 0.6140 47 1 4.0350 -1.2659 -1.0190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568394758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:09:04 Heat of formation + Delta-G solvation = -82.365721 kcal Electronic energy + Delta-G solvation = -25977.432929 eV Core-core repulsion = 22352.430314 eV Total energy + Delta-G solvation = -3625.002615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81991 -39.70821 -37.87627 -36.99889 -34.17299 -32.70835 -32.07861 -30.91805 -30.16888 -29.18804 -28.51030 -25.16943 -23.97142 -23.01902 -22.54849 -21.14182 -19.72875 -19.68213 -18.77331 -17.71424 -17.30801 -16.77413 -16.20981 -15.67022 -15.50489 -15.09489 -14.59106 -14.43086 -14.02870 -13.87104 -13.67930 -13.54714 -13.32147 -13.14447 -13.01114 -12.81440 -12.73184 -12.37782 -12.33729 -12.25099 -12.07312 -11.53007 -11.49866 -11.24177 -11.21233 -10.92100 -10.70612 -10.40083 -10.17462 -9.93219 -9.91353 -9.65822 -9.53521 -9.11800 -8.96842 -8.58208 -8.51933 -6.09228 -4.06898 2.34753 2.47534 2.58772 3.05630 3.27490 3.35707 3.38958 4.04216 4.05981 4.38350 4.41361 4.51229 4.64650 4.81788 4.87169 4.90866 5.01945 5.05394 5.13768 5.23453 5.24381 5.32381 5.35550 5.36989 5.44849 5.54972 5.55647 5.59046 5.66380 5.75448 5.84231 5.91602 5.93578 6.19881 6.22509 6.35453 6.52069 6.72321 6.78760 6.88957 7.17961 7.21429 7.36354 7.42481 7.74891 7.86597 8.10937 8.47911 8.94708 9.54099 11.03883 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.002904 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.428934 B = 9638.237146 C =10106.003675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.525 3.475 3 O -0.545 6.545 4 N -0.622 5.622 5 C 0.103 3.897 6 C -0.117 4.117 7 C -0.129 4.129 8 H 0.111 0.889 9 C 0.527 3.473 10 O -0.546 6.546 11 N -0.602 5.602 12 C 0.101 3.899 13 C -0.123 4.123 14 C -0.072 4.072 15 C -0.010 4.010 16 C -0.517 4.517 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.133 4.133 25 C 0.113 3.887 26 C 0.122 3.878 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.016 0.984 40 H 0.010 0.990 41 H 0.263 0.737 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.580 4.656 -15.495 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.422 6.422 4 N -0.358 5.358 5 C -0.020 4.020 6 C -0.156 4.156 7 C -0.151 4.151 8 H 0.129 0.871 9 C 0.314 3.686 10 O -0.424 6.424 11 N -0.334 5.334 12 C -0.021 4.021 13 C -0.161 4.161 14 C -0.090 4.090 15 C -0.047 4.047 16 C -0.555 4.555 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.171 4.171 25 C -0.009 4.009 26 C 0.000 4.000 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.017 5.434 -15.871 22.515 hybrid contribution 0.890 0.278 0.483 1.051 sum -14.127 5.712 -15.388 21.656 Atomic orbital electron populations 1.21896 0.91219 1.05479 1.04213 1.20511 0.90418 0.81913 0.75691 1.90746 1.70851 1.30627 1.49998 1.48655 1.07363 1.05942 1.73806 1.22154 0.96151 0.81380 1.02290 1.22609 0.92553 0.97471 1.02925 1.22527 0.93502 0.96429 1.02597 0.87139 1.20032 0.85741 0.78694 0.84102 1.90680 1.68993 1.60221 1.22548 1.48168 1.17618 1.43399 1.24212 1.21933 0.96872 0.99271 0.84026 1.21858 0.95540 1.01488 0.97190 1.21001 0.95033 0.98697 0.94292 1.19619 0.94758 0.96588 0.93726 1.21119 1.10506 1.29509 0.94331 0.90858 1.25022 0.97480 0.95189 0.95781 1.69904 1.39753 1.42196 1.02431 0.86816 0.84044 0.80493 0.78148 1.20382 1.21465 1.19063 1.22070 0.98302 1.01490 0.95238 1.21665 0.81278 0.99568 0.98406 1.22063 0.80334 0.95090 1.02549 0.89332 0.88914 0.89441 0.90719 0.90624 0.89677 0.88897 0.90204 0.91091 0.89036 0.92300 0.91665 0.96581 0.97121 0.92761 0.91022 0.92048 0.91594 0.89605 0.89940 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 9.51 36.00 0.34 -0.67 16 2 C 0.53 5.73 7.96 -10.99 -0.09 5.64 16 3 O -0.55 -8.54 17.34 5.56 0.10 -8.45 16 4 N -0.62 -6.04 3.34 -170.14 -0.57 -6.60 16 5 C 0.10 0.62 6.52 -2.81 -0.02 0.60 16 6 C -0.12 -0.81 6.39 -24.89 -0.16 -0.97 16 7 C -0.13 -1.27 2.56 -89.61 -0.23 -1.50 16 8 H 0.11 1.00 6.25 -51.93 -0.32 0.67 16 9 C 0.53 6.87 6.86 -10.99 -0.08 6.79 16 10 O -0.55 -8.87 15.30 5.56 0.09 -8.78 16 11 N -0.60 -7.73 2.98 -173.04 -0.52 -8.25 16 12 C 0.10 1.19 6.29 -3.94 -0.02 1.17 16 13 C -0.12 -1.92 5.17 -26.84 -0.14 -2.05 16 14 C -0.07 -1.25 2.10 -90.58 -0.19 -1.45 16 15 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 16 C -0.52 -13.74 8.94 -34.44 -0.31 -14.04 16 17 H 0.07 2.06 7.30 -52.48 -0.38 1.68 16 18 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 19 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 20 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 24 C -0.13 -2.00 5.36 -26.61 -0.14 -2.14 16 25 C 0.11 1.51 6.42 -3.71 -0.02 1.49 16 26 C 0.12 1.40 6.26 -2.52 -0.02 1.39 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.75 5.43 -51.93 -0.28 0.46 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 40 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.09 1.20 7.04 -51.93 -0.37 0.83 16 46 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 47 H 0.09 1.13 7.22 -51.93 -0.37 0.76 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -34.21 367.46 -8.46 -42.66 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.93 Total: -2.23 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.27 Total: -4.29 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.31 Total: -41.05 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.18 Total: -17.23 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.21 -8.46 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568394758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.703 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds