Wall clock time and date at job start Fri Apr 10 2020 22:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21275 * 120.00495 * 2 1 4 4 N 1.34780 * 119.99863 * 180.02562 * 2 1 3 5 5 C 1.47487 * 125.59054 * 359.94501 * 4 2 1 6 6 C 1.54326 * 107.03488 * 181.07044 * 5 4 2 7 7 C 1.55157 * 103.10138 * 22.24110 * 6 5 4 8 8 H 1.08995 * 111.00413 * 82.48313 * 7 6 5 9 9 C 1.50700 * 111.00524 * 206.33473 * 7 6 5 10 10 O 1.21276 * 119.99700 * 85.46698 * 9 7 6 11 11 N 1.34773 * 119.99922 * 265.46321 * 9 7 6 12 12 C 1.46925 * 120.63088 * 5.19052 * 11 9 7 13 13 C 1.52755 * 109.00923 * 233.57982 * 12 11 9 14 14 C 1.53040 * 109.38357 * 305.59178 * 13 12 11 15 15 C 1.53004 * 109.44995 * 181.25515 * 14 13 12 16 16 C 1.50697 * 109.47343 * 64.93349 * 15 14 13 17 17 H 1.08005 * 120.00002 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00174 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00168 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99670 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.46860 * 90.00827 * 20 18 16 22 22 H 1.48504 * 109.46641 * 210.00476 * 20 18 16 23 23 H 1.48495 * 109.47411 * 330.00513 * 20 18 16 24 24 C 1.53036 * 109.54095 * 61.23781 * 14 13 12 25 25 C 1.46926 * 120.63221 * 185.46495 * 11 9 7 26 26 C 1.47417 * 125.64945 * 179.97438 * 4 2 1 27 27 H 1.08997 * 109.47345 * 239.99845 * 1 2 3 28 28 H 1.09007 * 109.46890 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47690 * 119.99324 * 1 2 3 30 30 H 1.09004 * 110.03309 * 61.71058 * 5 4 2 31 31 H 1.08995 * 109.96415 * 300.39692 * 5 4 2 32 32 H 1.08999 * 110.71888 * 263.78944 * 6 5 4 33 33 H 1.08997 * 110.72196 * 140.69119 * 6 5 4 34 34 H 1.08997 * 109.58814 * 353.41678 * 12 11 9 35 35 H 1.09004 * 109.58793 * 113.84058 * 12 11 9 36 36 H 1.08995 * 109.56507 * 185.55037 * 13 12 11 37 37 H 1.09005 * 109.38421 * 65.51520 * 13 12 11 38 38 H 1.09003 * 109.45511 * 301.21112 * 14 13 12 39 39 H 1.08994 * 109.47207 * 184.93794 * 15 14 13 40 40 H 1.09002 * 109.47052 * 304.93629 * 15 14 13 41 41 H 0.97004 * 120.00427 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.49794 * 178.68780 * 24 14 13 43 43 H 1.08993 * 109.52147 * 58.60266 * 24 14 13 44 44 H 1.08999 * 109.58978 * 246.16225 * 25 11 9 45 45 H 1.09000 * 109.58157 * 6.44559 * 25 11 9 46 46 H 1.09004 * 110.36836 * 37.01177 * 26 4 2 47 47 H 1.08998 * 110.46578 * 274.73181 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5713 -2.5103 0.0000 6 6 2.7279 -3.5317 0.0267 7 6 3.9080 -2.7115 0.6115 8 1 3.8584 -2.6771 1.6998 9 6 5.2316 -3.2652 0.1504 10 8 5.6984 -2.9145 -0.9125 11 7 5.8964 -4.1502 0.9193 12 6 5.2932 -4.6709 2.1537 13 6 6.2610 -4.4454 3.3139 14 6 7.6191 -5.0609 2.9694 15 6 8.5805 -4.8634 4.1432 16 6 8.0818 -5.6367 5.3366 17 1 7.1704 -6.2119 5.2649 18 6 8.7888 -5.6099 6.5200 19 7 8.3538 -6.2852 7.5613 20 14 10.3653 -4.6156 6.6437 21 1 10.0466 -3.2361 7.0914 22 1 11.2785 -5.2557 7.6243 23 1 11.0241 -4.5646 5.3139 24 6 8.1889 -4.3789 1.7235 25 6 7.2407 -4.6080 0.5423 26 6 3.6478 -1.3124 -0.0011 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 0.9743 -2.6497 -0.9012 31 1 0.9462 -2.6349 0.8842 32 1 2.9603 -3.8774 -0.9806 33 1 2.4844 -4.3732 0.6752 34 1 4.3582 -4.1473 2.3526 35 1 5.1006 -5.7382 2.0443 36 1 5.8665 -4.9154 4.2148 37 1 6.3791 -3.3752 3.4838 38 1 7.4963 -6.1266 2.7761 39 1 9.5714 -5.2226 3.8657 40 1 8.6351 -3.8040 4.3938 41 1 8.8514 -6.2667 8.3938 42 1 9.1666 -4.8016 1.4923 43 1 8.2892 -3.3093 1.9074 44 1 7.2101 -5.6700 0.2988 45 1 7.5891 -4.0445 -0.3233 46 1 4.1060 -0.5379 0.6140 47 1 4.0350 -1.2659 -1.0190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568394758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:09:03 Heat of formation + Delta-G solvation = -104.789343 kcal Electronic energy + Delta-G solvation = -25978.405290 eV Core-core repulsion = 22352.430314 eV Total energy + Delta-G solvation = -3625.974976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74408 -40.64102 -38.99326 -37.96984 -35.70258 -34.16749 -33.34128 -32.00447 -30.78379 -30.38720 -29.62957 -26.53366 -24.99165 -24.10696 -23.58856 -22.43919 -21.03248 -20.41282 -19.83552 -18.89867 -18.58631 -18.07693 -17.16287 -16.56225 -16.40100 -16.35650 -16.05687 -15.39116 -15.33460 -15.00161 -14.77976 -14.60382 -14.52533 -14.19646 -14.13350 -13.89518 -13.66024 -13.44446 -13.28185 -13.09672 -12.99794 -12.90922 -12.72095 -12.42120 -12.31180 -12.15076 -11.97904 -11.81957 -11.71873 -11.38908 -11.20298 -11.04361 -10.92651 -10.75288 -10.70639 -9.74950 -9.63725 -8.25421 -6.26176 1.34681 1.37319 1.45977 1.47329 1.58332 1.78368 2.15247 2.37235 3.10620 3.28125 3.37270 3.62382 3.82776 3.86571 3.99320 4.06340 4.11399 4.19494 4.23996 4.27080 4.42006 4.49472 4.53533 4.58097 4.64393 4.66564 4.76322 4.81423 4.83164 4.87083 4.92803 4.96533 5.07603 5.08609 5.10879 5.17142 5.22607 5.24683 5.38103 5.42295 5.60735 5.73687 5.74756 6.34362 6.39067 6.47791 6.81388 7.07011 7.09983 7.37847 8.90511 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.002904 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.428934 B = 9638.237146 C =10106.003675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.513 3.487 3 O -0.608 6.608 4 N -0.621 5.621 5 C 0.100 3.900 6 C -0.111 4.111 7 C -0.121 4.121 8 H 0.125 0.875 9 C 0.526 3.474 10 O -0.583 6.583 11 N -0.602 5.602 12 C 0.110 3.890 13 C -0.120 4.120 14 C -0.069 4.069 15 C -0.009 4.009 16 C -0.512 4.512 17 H 0.047 0.953 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.937 3.063 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.251 1.251 24 C -0.124 4.124 25 C 0.116 3.884 26 C 0.121 3.879 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.013 0.987 40 H 0.008 0.992 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 4.119 -16.505 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.305 3.695 3 O -0.490 6.490 4 N -0.355 5.355 5 C -0.021 4.021 6 C -0.149 4.149 7 C -0.143 4.143 8 H 0.142 0.858 9 C 0.315 3.685 10 O -0.463 6.463 11 N -0.334 5.334 12 C -0.011 4.011 13 C -0.158 4.158 14 C -0.088 4.088 15 C -0.046 4.046 16 C -0.550 4.550 17 H 0.065 0.935 18 C -0.191 4.191 19 N -0.592 5.592 20 Si 0.762 3.238 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.175 1.175 24 C -0.162 4.162 25 C -0.006 4.006 26 C -0.003 4.003 27 H 0.133 0.867 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.032 0.968 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.798 4.855 -16.891 24.312 hybrid contribution 1.428 0.397 0.786 1.677 sum -15.370 5.252 -16.105 22.874 Atomic orbital electron populations 1.21915 0.86994 1.06112 1.06630 1.21512 0.92385 0.81195 0.74367 1.90714 1.72390 1.32894 1.52982 1.48802 1.06550 1.07424 1.72748 1.22473 0.96018 0.78650 1.04941 1.22696 0.91108 0.98133 1.02957 1.22485 0.92937 0.95690 1.03171 0.85766 1.20535 0.86513 0.77964 0.83496 1.90669 1.70114 1.61271 1.24284 1.48228 1.17420 1.43356 1.24377 1.21935 0.96677 1.00732 0.81790 1.21753 0.95457 1.00461 0.98127 1.20916 0.95160 0.99132 0.93543 1.19597 0.95679 0.95442 0.93919 1.21453 1.09252 1.28617 0.95701 0.93503 1.25872 1.00973 0.96559 0.95666 1.70040 1.41534 1.44416 1.03170 0.85846 0.80209 0.78981 0.78721 1.19834 1.21381 1.17475 1.21951 0.99085 1.00556 0.94624 1.21587 0.81328 1.00456 0.97219 1.21870 0.81935 0.95626 1.00865 0.86678 0.89337 0.86842 0.88415 0.87597 0.90410 0.85930 0.87066 0.89508 0.91194 0.93054 0.91891 0.96838 0.97348 0.92783 0.90301 0.92923 0.90028 0.90163 0.92333 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.51 71.23 0.68 -0.76 16 2 C 0.51 10.70 7.96 87.65 0.70 11.40 16 3 O -0.61 -19.73 17.34 -3.02 -0.05 -19.78 16 4 N -0.62 -11.02 3.34 -810.58 -2.70 -13.72 16 5 C 0.10 0.80 6.52 86.64 0.56 1.36 16 6 C -0.11 -1.12 6.39 31.78 0.20 -0.91 16 7 C -0.12 -2.13 2.56 -10.14 -0.03 -2.16 16 8 H 0.12 1.86 6.25 -2.39 -0.01 1.85 16 9 C 0.53 12.97 6.86 87.66 0.60 13.57 16 10 O -0.58 -18.79 15.30 -3.02 -0.05 -18.83 16 11 N -0.60 -14.24 2.98 -819.76 -2.44 -16.68 16 12 C 0.11 2.29 6.29 86.22 0.54 2.83 16 13 C -0.12 -3.61 5.17 30.53 0.16 -3.45 16 14 C -0.07 -2.35 2.10 -10.77 -0.02 -2.37 16 15 C -0.01 -0.39 3.52 29.85 0.10 -0.29 16 16 C -0.51 -27.53 8.94 25.60 0.23 -27.30 16 17 H 0.05 2.70 7.30 -2.91 -0.02 2.68 16 18 C 0.01 0.33 5.47 84.66 0.46 0.79 16 19 N -0.95 -57.83 13.96 21.45 0.30 -57.53 16 20 Si 0.94 43.79 27.47 68.60 1.88 45.67 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 24 C -0.12 -3.56 5.36 30.67 0.16 -3.40 16 25 C 0.12 2.92 6.42 86.36 0.55 3.48 16 26 C 0.12 2.77 6.26 86.87 0.54 3.31 16 27 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.92 8.12 -2.38 -0.02 0.90 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.95 8.03 -2.39 -0.02 0.93 16 33 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 1.64 5.43 -2.39 -0.01 1.62 16 35 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.07 2.42 6.91 -2.39 -0.02 2.40 16 37 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 40 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 41 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 2.16 7.04 -2.39 -0.02 2.14 16 46 H 0.06 1.58 8.04 -2.38 -0.02 1.56 16 47 H 0.06 1.73 7.22 -2.39 -0.02 1.71 16 Total: -1.00 -78.70 367.46 3.28 -75.42 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.89 Total: 9.35 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.46 Total: -3.90 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -4.85 Total: -87.93 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.10 Total: -38.61 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -78.70 3.28 -75.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568394758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.371 kcal (2) G-P(sol) polarization free energy of solvation -78.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds