Wall clock time and date at job start Fri Apr 10 2020 22:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47193 * 119.78626 * 2 1 4 4 C 1.52995 * 108.66710 * 108.03568 * 3 2 1 5 5 C 1.51778 * 110.87942 * 86.46545 * 4 3 2 6 6 C 1.51789 * 113.81183 * 292.99598 * 5 4 3 7 7 C 1.53059 * 110.74470 * 66.81288 * 6 5 4 8 8 H 1.09007 * 109.63475 * 34.98467 * 7 6 5 9 9 C 1.50699 * 109.63919 * 155.37919 * 7 6 5 10 10 O 1.21284 * 119.99803 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00350 * 179.97438 * 9 7 6 12 12 C 1.46931 * 120.63030 * 179.97438 * 11 9 7 13 13 C 1.53200 * 108.77279 * 126.37310 * 12 11 9 14 14 C 1.53039 * 109.31160 * 54.63574 * 13 12 11 15 15 C 1.50701 * 109.45760 * 178.62975 * 14 13 12 16 16 H 1.08001 * 120.00288 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99663 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99567 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47178 * 89.99782 * 19 17 15 21 21 H 1.48500 * 109.46939 * 209.99535 * 19 17 15 22 22 H 1.48497 * 109.46971 * 329.99469 * 19 17 15 23 23 C 1.53046 * 109.52798 * 298.64112 * 14 13 12 24 24 C 1.46928 * 120.63178 * 359.97438 * 11 9 7 25 25 C 1.33372 * 119.78875 * 179.97438 * 2 1 3 26 26 O 1.21285 * 119.89175 * 0.28947 * 25 2 1 27 27 H 1.08999 * 109.46955 * 90.00493 * 1 2 3 28 28 H 1.09000 * 109.47360 * 209.99823 * 1 2 3 29 29 H 1.09000 * 109.47473 * 330.00404 * 1 2 3 30 30 H 1.08997 * 109.60543 * 348.28252 * 3 2 1 31 31 H 1.08998 * 109.73923 * 227.86817 * 3 2 1 32 32 H 1.09000 * 109.19289 * 326.10959 * 4 3 2 33 33 H 1.09000 * 109.15830 * 206.80150 * 4 3 2 34 34 H 1.09008 * 108.61408 * 171.88022 * 5 4 3 35 35 H 1.08997 * 108.50732 * 54.03739 * 5 4 3 36 36 H 1.08997 * 109.22753 * 306.48084 * 6 5 4 37 37 H 1.09004 * 109.22403 * 187.13224 * 6 5 4 38 38 H 1.08998 * 109.58425 * 6.59260 * 12 11 9 39 39 H 1.08995 * 109.70793 * 246.22878 * 12 11 9 40 40 H 1.08997 * 109.49280 * 294.68615 * 13 12 11 41 41 H 1.08996 * 109.52417 * 174.60413 * 13 12 11 42 42 H 1.09002 * 109.46050 * 58.65698 * 14 13 12 43 43 H 0.97001 * 119.99657 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.49379 * 181.30938 * 23 14 13 45 45 H 1.08994 * 109.49581 * 301.40708 * 23 14 13 46 46 H 1.08999 * 109.58766 * 353.41859 * 24 11 9 47 47 H 1.09002 * 109.58364 * 113.69954 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1961 1.2775 0.0000 4 6 2.8289 1.4795 1.3782 5 6 4.1870 0.8062 1.4539 6 6 4.1247 -0.7088 1.3845 7 6 3.6417 -1.1689 0.0069 8 1 4.0194 -0.4912 -0.7589 9 6 4.1387 -2.5657 -0.2636 10 8 4.8138 -3.1400 0.5642 11 7 3.8322 -3.1770 -1.4249 12 6 4.3100 -4.5383 -1.7032 13 6 3.1103 -5.4154 -2.0754 14 6 2.3495 -4.7671 -3.2342 15 6 1.1880 -5.6440 -3.6253 16 1 1.0099 -6.5706 -3.0997 17 6 0.3525 -5.2634 -4.6540 18 7 0.5690 -4.1349 -5.2936 19 14 -1.0868 -6.3508 -5.1392 20 1 -2.2862 -5.9641 -4.3537 21 1 -1.3682 -6.1825 -6.5875 22 1 -0.7501 -7.7703 -4.8621 23 6 1.8288 -3.3948 -2.8003 24 6 3.0140 -2.4948 -2.4368 25 6 2.1275 -1.1575 0.0005 26 8 1.5153 -2.2044 -0.0043 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.5053 2.0943 -0.2085 31 1 2.9763 1.2551 -0.7608 32 1 2.1747 1.0533 2.1388 33 1 2.9472 2.5470 1.5645 34 1 4.6654 1.0921 2.3908 35 1 4.7989 1.1675 0.6274 36 1 3.4369 -1.0751 2.1466 37 1 5.1176 -1.1179 1.5716 38 1 4.7972 -4.9430 -0.8161 39 1 5.0180 -4.5172 -2.5316 40 1 2.4488 -5.5113 -1.2143 41 1 3.4603 -6.4025 -2.3770 42 1 3.0183 -4.6488 -4.0867 43 1 -0.0190 -3.8670 -6.0171 44 1 1.2673 -2.9436 -3.6183 45 1 1.1795 -3.5099 -1.9326 46 1 2.6462 -1.5511 -2.0339 47 1 3.6161 -2.3030 -3.3250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602131704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:13 Heat of formation + Delta-G solvation = -74.398669 kcal Electronic energy + Delta-G solvation = -27814.287204 eV Core-core repulsion = 24189.630067 eV Total energy + Delta-G solvation = -3624.657137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00613 -38.96321 -37.03975 -36.50037 -34.57886 -33.41542 -31.71051 -30.82790 -29.91514 -28.50407 -26.49442 -25.56627 -24.11695 -22.85103 -22.16971 -20.89671 -20.17859 -19.04648 -18.02637 -17.46571 -17.00071 -16.33258 -15.97013 -15.45743 -15.09719 -14.63488 -14.45162 -14.31382 -14.05343 -13.74585 -13.42160 -13.11478 -12.88281 -12.79399 -12.64010 -12.38631 -12.35386 -12.09435 -11.97376 -11.65184 -11.53139 -11.22264 -11.15262 -10.98000 -10.87342 -10.82625 -10.57271 -10.26308 -9.96176 -9.61221 -9.55453 -9.32981 -9.07488 -8.81902 -8.70984 -8.28290 -7.89041 -5.95213 -4.00110 2.68685 2.74662 3.21786 3.33452 3.39540 3.43724 3.51232 4.38561 4.47616 4.48707 4.52917 4.61896 4.86331 5.00251 5.15342 5.16303 5.26824 5.31255 5.34353 5.44933 5.55757 5.65115 5.67062 5.79437 5.80475 5.87537 5.90463 6.03512 6.05027 6.15544 6.16642 6.24740 6.40023 6.45045 6.55212 6.79920 7.01276 7.16520 7.31430 7.36211 7.45634 7.76102 8.00474 8.06151 8.13753 8.30316 8.51195 8.59618 9.02739 9.63945 11.10396 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.004673 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.908718 B = 5990.120090 C = 7027.943081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.615 5.615 3 C 0.108 3.892 4 C -0.141 4.141 5 C -0.121 4.121 6 C -0.098 4.098 7 C -0.126 4.126 8 H 0.113 0.887 9 C 0.534 3.466 10 O -0.555 6.555 11 N -0.586 5.586 12 C 0.113 3.887 13 C -0.122 4.122 14 C 0.050 3.950 15 C -0.507 4.507 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.120 4.120 24 C 0.111 3.889 25 C 0.521 3.479 26 O -0.509 6.509 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.258 0.742 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.974 15.846 10.126 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.349 5.349 3 C -0.015 4.015 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.136 4.136 7 C -0.151 4.151 8 H 0.131 0.869 9 C 0.320 3.680 10 O -0.435 6.435 11 N -0.316 5.316 12 C -0.008 4.008 13 C -0.161 4.161 14 C 0.031 3.969 15 C -0.545 4.545 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.158 4.158 24 C -0.011 4.011 25 C 0.307 3.693 26 O -0.383 6.383 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.906 15.054 10.376 18.930 hybrid contribution -0.973 -0.295 -0.477 1.123 sum 3.933 14.759 9.899 18.201 Atomic orbital electron populations 1.21674 0.78879 1.02903 1.02318 1.47657 1.07079 1.05959 1.74252 1.21855 0.96689 0.85460 0.97457 1.21847 0.97329 1.01155 0.97655 1.21192 0.97069 0.94798 1.02803 1.21141 1.03742 0.95086 0.93675 1.21718 0.94075 0.97702 1.01569 0.86937 1.19649 0.79938 0.86780 0.81623 1.90617 1.40995 1.66227 1.45655 1.48050 1.50414 1.16187 1.16961 1.21690 0.97261 0.81475 1.00423 1.21992 0.95808 0.97613 1.00647 1.18627 0.94553 0.92099 0.91591 1.21215 1.11379 1.05864 1.16043 0.92774 1.24940 0.97626 0.95179 0.96182 1.69851 1.38491 1.21881 1.23047 0.86634 0.83023 0.81107 0.77472 1.20779 1.21326 1.19973 1.21967 0.95041 0.97159 1.01662 1.21986 0.94020 0.95611 0.89513 1.19827 0.89006 0.83763 0.76692 1.90861 1.69093 1.30792 1.47534 0.92288 0.90361 0.91518 0.89470 0.90580 0.91123 0.90554 0.91259 0.91699 0.91359 0.89025 0.90403 0.92262 0.92721 0.92339 0.95795 0.93171 0.88428 0.92612 0.92771 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.35 59.84 0.62 1.56 16 2 N -0.61 -7.37 2.86 -181.11 -0.52 -7.89 16 3 C 0.11 0.85 5.87 -3.67 -0.02 0.83 16 4 C -0.14 -0.99 5.74 -27.35 -0.16 -1.15 16 5 C -0.12 -0.97 5.28 -27.97 -0.15 -1.12 16 6 C -0.10 -1.18 4.79 -27.32 -0.13 -1.32 16 7 C -0.13 -1.82 1.41 -92.54 -0.13 -1.95 16 8 H 0.11 1.34 6.58 -51.93 -0.34 1.00 16 9 C 0.53 10.05 6.49 -10.99 -0.07 9.98 16 10 O -0.56 -11.66 14.92 5.55 0.08 -11.58 16 11 N -0.59 -11.55 2.84 -172.76 -0.49 -12.04 16 12 C 0.11 2.26 6.43 -3.70 -0.02 2.23 16 13 C -0.12 -2.74 5.30 -26.61 -0.14 -2.88 16 14 C 0.05 1.26 2.06 -91.73 -0.19 1.07 16 15 C -0.51 -14.20 8.56 -34.44 -0.29 -14.50 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.29 11.31 55.43 0.63 -24.66 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 23 C -0.12 -2.89 5.05 -26.61 -0.13 -3.02 16 24 C 0.11 2.19 5.40 -3.71 -0.02 2.17 16 25 C 0.52 8.23 4.48 -11.25 -0.05 8.18 16 26 O -0.51 -10.48 13.12 5.55 0.07 -10.41 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.04 7.38 -51.93 -0.38 0.65 16 29 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 30 H 0.09 0.50 7.92 -51.93 -0.41 0.09 16 31 H 0.08 0.56 6.73 -51.93 -0.35 0.21 16 32 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 36 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 37 H 0.09 1.19 7.13 -51.93 -0.37 0.82 16 38 H 0.08 1.53 7.00 -51.93 -0.36 1.17 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.10 2.58 6.03 -51.93 -0.31 2.26 16 45 H 0.06 1.46 6.71 -51.93 -0.35 1.11 16 46 H 0.05 0.97 4.59 -51.93 -0.24 0.73 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -33.34 351.49 -8.63 -41.97 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.70 Total: 1.01 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.99 Total: 1.70 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.38 Total: -44.59 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.16 Total: -21.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.34 -8.63 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602131704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.427 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds