Wall clock time and date at job start Fri Apr 10 2020 22:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42902 * 114.00151 * 2 1 4 4 H 1.09003 * 109.46875 * 28.39759 * 3 2 1 5 5 C 1.50699 * 109.46668 * 148.39394 * 3 2 1 6 6 O 1.21273 * 120.00406 * 6.20064 * 5 3 2 7 7 N 1.34781 * 119.99262 * 186.20137 * 5 3 2 8 8 C 1.46942 * 120.44470 * 5.08332 * 7 5 3 9 9 C 1.53595 * 108.52328 * 125.75532 * 8 7 5 10 10 H 1.09002 * 110.59693 * 172.17187 * 9 8 7 11 11 C 1.53373 * 108.68732 * 294.36603 * 9 8 7 12 12 C 1.52914 * 109.76079 * 61.20957 * 11 9 8 13 13 C 1.53010 * 110.29289 * 59.36904 * 12 11 9 14 14 C 1.53367 * 109.24909 * 300.28038 * 13 12 11 15 15 H 1.08998 * 110.60000 * 177.54577 * 14 13 12 16 16 C 1.46952 * 120.43515 * 184.80945 * 7 5 3 17 17 N 1.47564 * 107.98748 * 56.39060 * 14 13 12 18 18 C 1.36937 * 121.61237 * 121.62367 * 17 14 13 19 19 H 1.07997 * 119.99925 * 33.18941 * 18 17 14 20 20 C 1.38816 * 120.00225 * 213.18396 * 18 17 14 21 21 N 1.31624 * 119.99923 * 9.25772 * 20 18 17 22 22 Si 1.86794 * 120.00024 * 189.25700 * 20 18 17 23 23 H 1.48497 * 109.47460 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47088 * 120.00352 * 22 20 18 25 25 H 1.48505 * 109.47102 * 239.99732 * 22 20 18 26 26 C 1.52995 * 109.46907 * 268.39511 * 3 2 1 27 27 C 1.53000 * 117.50164 * 297.67297 * 26 3 2 28 28 C 1.53005 * 60.02999 * 107.50245 * 27 26 3 29 29 H 1.08998 * 109.46825 * 294.38425 * 1 2 3 30 30 H 1.08998 * 109.47132 * 54.37942 * 1 2 3 31 31 H 1.08992 * 109.47163 * 174.38334 * 1 2 3 32 32 H 1.09006 * 109.62354 * 245.46213 * 8 7 5 33 33 H 1.08996 * 109.62956 * 6.04302 * 8 7 5 34 34 H 1.09000 * 109.50377 * 180.25061 * 11 9 8 35 35 H 1.09007 * 109.50097 * 300.36817 * 11 9 8 36 36 H 1.08997 * 108.46421 * 299.55624 * 12 11 9 37 37 H 1.09000 * 109.86451 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.50950 * 180.34473 * 13 12 11 39 39 H 1.09003 * 109.54866 * 60.23049 * 13 12 11 40 40 H 1.08998 * 109.62422 * 353.95079 * 16 7 5 41 41 H 1.08998 * 109.61992 * 114.50959 * 16 7 5 42 42 H 0.96996 * 120.00001 * 180.02562 * 21 20 18 43 43 H 1.09000 * 115.54740 * 152.00589 * 26 3 2 44 44 H 1.08998 * 117.50126 * 215.00466 * 27 26 3 45 45 H 1.09007 * 117.49444 * 0.02562 * 27 26 3 46 46 H 1.09006 * 117.49220 * 107.50096 * 28 27 26 47 47 H 1.08999 * 117.50222 * 252.51890 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3055 0.0000 4 1 1.3323 2.0051 0.4888 5 6 3.3201 1.2720 0.7446 6 8 3.7718 0.2146 1.1300 7 7 3.9895 2.4175 0.9823 8 6 3.3998 3.7135 0.6192 9 6 3.3939 4.6129 1.8643 10 1 3.0918 5.6271 1.6032 11 6 2.4450 4.0052 2.9049 12 6 2.9395 2.6149 3.3059 13 6 4.3498 2.7022 3.8930 14 6 5.2979 3.2973 2.8446 15 1 6.3014 3.4097 3.2550 16 6 5.3162 2.3872 1.6134 17 7 4.7563 4.6062 2.4311 18 6 5.4827 5.7590 2.5674 19 1 6.5568 5.7365 2.4580 20 6 4.8383 6.9566 2.8460 21 7 3.5598 6.9587 3.1589 22 14 5.7856 8.5650 2.7770 23 1 7.1972 8.2926 2.4049 24 1 5.1698 9.4591 1.7638 25 1 5.7431 9.2221 4.1081 26 6 2.2547 1.7549 -1.4419 27 6 3.2287 0.9285 -2.2841 28 6 1.7259 0.8556 -2.5621 29 1 -0.3633 0.4243 0.9360 30 1 -0.3633 0.5985 -0.8354 31 1 -0.3633 -1.0227 -0.1006 32 1 3.9950 4.1794 -0.1662 33 1 2.3781 3.5658 0.2693 34 1 2.4273 4.6362 3.7935 35 1 1.4409 3.9373 2.4860 36 1 2.9554 1.9845 2.4169 37 1 2.2660 2.1813 4.0452 38 1 4.6917 1.7046 4.1685 39 1 4.3381 3.3400 4.7769 40 1 5.5540 1.3677 1.9170 41 1 6.0655 2.7460 0.9077 42 1 3.1095 7.7955 3.3533 43 1 2.2339 2.8319 -1.6085 44 1 3.8486 1.4617 -3.0048 45 1 3.6951 0.0643 -1.8109 46 1 1.3572 1.3411 -3.4658 47 1 1.2039 -0.0560 -2.2715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039564708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:09 Heat of formation + Delta-G solvation = 1.767550 kcal Electronic energy + Delta-G solvation = -28500.262943 eV Core-core repulsion = 24878.908620 eV Total energy + Delta-G solvation = -3621.354322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83632 -38.84792 -37.16756 -35.86992 -33.90899 -32.82529 -31.96394 -30.34415 -29.09446 -26.80717 -26.10848 -25.28038 -23.69158 -22.40647 -21.68521 -21.24339 -20.97299 -19.28772 -18.26040 -17.36991 -16.82422 -16.41744 -15.93083 -15.33034 -14.71950 -14.66500 -14.58271 -14.15093 -13.95343 -13.55348 -13.30557 -13.08647 -12.88007 -12.68268 -12.41947 -12.09991 -12.00602 -11.72108 -11.45508 -11.40678 -11.24981 -11.15431 -10.92272 -10.76500 -10.55899 -10.45673 -10.26228 -10.13593 -10.09781 -9.94064 -9.78282 -9.53964 -9.36825 -9.05191 -8.55054 -7.86457 -6.56803 -5.86338 -3.37294 2.93842 3.09802 3.30944 3.39952 3.41079 3.67358 4.08667 4.40664 4.57841 4.77874 4.85111 5.06432 5.17343 5.21009 5.28042 5.30712 5.36636 5.42594 5.58476 5.64445 5.73446 5.74625 5.80476 5.84821 5.87305 5.94614 6.01084 6.08366 6.17810 6.18864 6.27813 6.40153 6.47232 6.50052 6.62353 6.74321 6.87201 6.98587 7.05392 7.08705 7.17446 7.47503 7.56156 7.71493 7.92539 8.37540 8.58706 9.11351 9.70393 10.35404 11.19918 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.004823 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.898623 B = 5804.139309 C = 6074.800117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.101 3.899 4 H 0.089 0.911 5 C 0.523 3.477 6 O -0.538 6.538 7 N -0.584 5.584 8 C 0.084 3.916 9 C 0.178 3.822 10 H 0.118 0.882 11 C -0.115 4.115 12 C -0.137 4.137 13 C -0.119 4.119 14 C 0.151 3.849 15 H 0.077 0.923 16 C 0.105 3.895 17 N -0.578 5.578 18 C -0.249 4.249 19 H 0.066 0.934 20 C 0.008 3.992 21 N -0.900 5.900 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.290 1.290 26 C -0.182 4.182 27 C -0.164 4.164 28 C -0.167 4.167 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.254 0.746 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 -8.578 -8.308 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.274 6.274 3 C 0.040 3.960 4 H 0.107 0.893 5 C 0.311 3.689 6 O -0.416 6.416 7 N -0.318 5.318 8 C -0.040 4.040 9 C 0.071 3.929 10 H 0.135 0.865 11 C -0.154 4.154 12 C -0.175 4.175 13 C -0.158 4.158 14 C 0.043 3.957 15 H 0.095 0.905 16 C -0.019 4.019 17 N -0.299 5.299 18 C -0.379 4.379 19 H 0.083 0.917 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C -0.201 4.201 27 C -0.201 4.201 28 C -0.204 4.204 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.415 -9.131 -8.061 13.330 hybrid contribution 0.064 1.326 0.146 1.336 sum -5.351 -7.805 -7.915 12.337 Atomic orbital electron populations 1.22902 0.81014 1.02814 1.00352 1.88003 1.19376 1.25375 1.94649 1.21436 0.94391 0.86235 0.93979 0.89307 1.19832 0.85803 0.83934 0.79315 1.90669 1.68701 1.30057 1.52148 1.47993 1.18904 1.05784 1.59122 1.22778 0.96688 0.83888 1.00617 1.21148 0.85479 0.98051 0.88229 0.86497 1.21813 0.96397 0.95618 1.01533 1.22002 0.96145 0.98671 1.00643 1.21870 0.96187 0.98644 0.99143 1.21169 0.96625 0.86743 0.91150 0.90468 1.22100 0.82646 1.01052 0.96117 1.44316 1.14030 1.01481 1.70110 1.19179 0.91095 0.85234 1.42350 0.91667 1.25191 0.96376 0.98694 0.98828 1.69898 1.09192 1.25562 1.49718 0.86205 0.79432 0.83755 0.77242 1.20286 1.21636 1.21706 1.22798 1.07620 0.98465 0.91200 1.22888 0.92477 1.02415 1.02350 1.22960 0.97348 1.01791 0.98296 0.93840 0.93558 0.89438 0.91737 0.91484 0.90721 0.94869 0.90925 0.95038 0.93943 0.92414 0.90070 0.91999 0.93604 0.86322 0.88810 0.88364 0.88901 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.95 101.05 1.01 1.28 16 2 O -0.36 -5.29 8.65 -55.07 -0.48 -5.76 16 3 C 0.10 1.48 2.10 -27.89 -0.06 1.42 16 4 H 0.09 1.22 6.80 -51.93 -0.35 0.87 16 5 C 0.52 9.34 3.99 -10.98 -0.04 9.30 16 6 O -0.54 -11.38 15.87 -14.27 -0.23 -11.60 16 7 N -0.58 -10.34 1.66 -172.53 -0.29 -10.62 16 8 C 0.08 1.46 5.01 -3.49 -0.02 1.45 16 9 C 0.18 3.76 2.62 -66.84 -0.18 3.58 16 10 H 0.12 2.79 6.00 -51.93 -0.31 2.48 16 11 C -0.11 -2.34 5.50 -26.58 -0.15 -2.49 16 12 C -0.14 -2.68 5.56 -26.77 -0.15 -2.83 16 13 C -0.12 -2.39 5.61 -26.54 -0.15 -2.53 16 14 C 0.15 3.06 3.58 -67.10 -0.24 2.82 16 15 H 0.08 1.54 8.01 -51.93 -0.42 1.13 16 16 C 0.10 1.93 5.86 -3.73 -0.02 1.91 16 17 N -0.58 -13.19 2.51 -155.71 -0.39 -13.58 16 18 C -0.25 -6.30 9.71 -15.06 -0.15 -6.45 16 19 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 20 C 0.01 0.21 5.14 -17.43 -0.09 0.12 16 21 N -0.90 -23.82 10.63 55.49 0.59 -23.23 16 22 Si 0.90 20.52 29.56 -169.99 -5.03 15.50 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.18 -2.26 4.97 -90.58 -0.45 -2.71 16 27 C -0.16 -2.04 9.78 -26.73 -0.26 -2.31 16 28 C -0.17 -1.79 9.27 -26.69 -0.25 -2.04 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.41 7.40 -51.93 -0.38 0.03 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.99 4.81 -51.93 -0.25 0.74 16 34 H 0.07 1.77 7.79 -51.93 -0.40 1.37 16 35 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 36 H 0.07 1.41 2.63 -51.94 -0.14 1.27 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.51 6.98 -51.93 -0.36 1.14 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 43 H 0.12 1.36 7.05 -51.93 -0.37 0.99 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.10 1.12 6.25 -51.93 -0.32 0.80 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -29.05 348.26 -9.26 -38.31 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.50 Total: 5.24 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.19 Total: 0.50 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.09 Total: -47.44 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.70 Total: -17.37 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.05 -9.26 -38.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039564708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.080 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds