Wall clock time and date at job start Fri Apr 10 2020 22:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30519 * 126.34491 * 60.02520 * 4 2 1 6 6 N 1.28595 * 109.67515 * 179.97438 * 5 4 2 7 7 C 1.30520 * 109.67477 * 0.02562 * 6 5 4 8 8 C 1.50694 * 126.35007 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47590 * 89.97155 * 8 7 6 10 10 C 1.34775 * 120.00584 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99423 * 359.97438 * 10 9 8 12 12 C 1.50687 * 120.00267 * 179.97438 * 10 9 8 13 13 C 1.53005 * 109.47390 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47274 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46781 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46836 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99828 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00108 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47108 * 90.00193 * 20 18 16 22 22 H 1.48502 * 109.46982 * 210.00262 * 20 18 16 23 23 H 1.48500 * 109.46778 * 330.00086 * 20 18 16 24 24 N 1.35492 * 126.35123 * 239.71151 * 4 2 1 25 25 C 1.46506 * 126.97422 * 0.04168 * 24 4 2 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.09007 * 109.47186 * 209.97035 * 8 7 6 34 34 H 1.08996 * 109.47179 * 329.96845 * 8 7 6 35 35 H 0.97006 * 119.99622 * 359.97438 * 9 8 7 36 36 H 1.09002 * 109.47740 * 300.00166 * 12 10 9 37 37 H 1.09003 * 109.47589 * 60.00418 * 12 10 9 38 38 H 1.09008 * 109.46489 * 300.00183 * 13 12 10 39 39 H 1.08996 * 109.47269 * 59.99733 * 13 12 10 40 40 H 1.09000 * 109.46641 * 299.99422 * 14 13 12 41 41 H 1.08992 * 109.47221 * 59.99949 * 14 13 12 42 42 H 1.08993 * 109.47293 * 299.99657 * 15 14 13 43 43 H 1.09001 * 109.46952 * 60.00195 * 15 14 13 44 44 H 0.97002 * 120.00629 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.47024 * 89.99873 * 25 24 4 46 46 H 1.09005 * 109.46364 * 209.99284 * 25 24 4 47 47 H 1.08992 * 109.47224 * 329.99340 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7951 -0.3741 -2.4689 6 7 2.3800 -1.2005 -3.2617 7 6 3.0166 -2.1021 -2.5650 8 6 3.8273 -3.2474 -3.1145 9 7 5.2176 -2.8209 -3.2917 10 6 6.1316 -3.6859 -3.7742 11 8 5.8031 -4.8175 -4.0613 12 6 7.5615 -3.2470 -3.9570 13 6 8.3847 -4.4098 -4.5148 14 6 9.8367 -3.9643 -4.6997 15 6 10.6599 -5.1275 -5.2569 16 6 12.0899 -4.6885 -5.4397 17 1 12.3824 -3.6809 -5.1836 18 6 13.0248 -5.5732 -5.9338 19 7 14.2729 -5.1904 -6.0929 20 14 12.5187 -7.3158 -6.3774 21 1 12.0905 -7.3603 -7.7986 22 1 13.6707 -8.2316 -6.1786 23 1 11.3926 -7.7408 -5.5076 24 7 2.8190 -1.8133 -1.2560 25 6 3.3455 -2.5471 -0.1024 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.7903 -4.0856 -2.4186 34 1 3.4163 -3.5550 -4.0760 35 1 5.4803 -1.9159 -3.0617 36 1 7.5984 -2.4093 -4.6534 37 1 7.9727 -2.9386 -2.9957 38 1 8.3479 -5.2478 -3.8185 39 1 7.9735 -4.7179 -5.4760 40 1 9.8737 -3.1263 -5.3957 41 1 10.2476 -3.6566 -3.7383 42 1 10.6228 -5.9652 -4.5607 43 1 10.2491 -5.4355 -6.2184 44 1 14.9307 -5.8129 -6.4402 45 1 2.6395 -3.3258 0.1859 46 1 4.3004 -3.0020 -0.3662 47 1 3.4885 -1.8596 0.7311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588673948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:43 Heat of formation + Delta-G solvation = 9.933628 kcal Electronic energy + Delta-G solvation = -24384.999860 eV Core-core repulsion = 20796.292397 eV Total energy + Delta-G solvation = -3588.707464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.68966 -39.82803 -36.46262 -35.88680 -35.12959 -34.72101 -32.61196 -31.14509 -30.01819 -28.26773 -27.74696 -27.27788 -25.45559 -24.02335 -22.22617 -21.43699 -20.51145 -20.35016 -20.03907 -17.69739 -17.16331 -16.97958 -16.61471 -16.08959 -16.01473 -15.61877 -14.98622 -14.53360 -14.27224 -14.18192 -14.12166 -13.79166 -13.63070 -13.41341 -13.25718 -12.70779 -12.65707 -12.34451 -12.27480 -12.10344 -11.86006 -11.85060 -11.76378 -11.68612 -11.12761 -10.75631 -10.74241 -10.70139 -10.55397 -10.17050 -9.85686 -9.66866 -9.60414 -9.44857 -9.37599 -9.12197 -8.49495 -6.00621 -3.98200 1.15336 1.86063 2.31749 2.54177 3.08075 3.35299 3.42215 3.47824 3.60375 3.72529 3.98176 4.11639 4.38569 4.47455 4.49879 4.50713 4.60371 4.69861 4.76440 5.01433 5.09029 5.12992 5.20383 5.24302 5.26363 5.27986 5.34256 5.35746 5.42818 5.59238 5.65938 5.73448 5.78457 5.98881 6.00794 6.12838 6.27733 6.39302 6.66690 6.80375 6.98061 7.19135 7.37621 7.50377 7.84539 8.04698 8.28063 8.58109 9.04293 9.62675 11.12834 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.001882 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.641196 B =14871.021065 C =15154.965966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.007 4.007 3 C -0.143 4.143 4 C 0.185 3.815 5 N -0.287 5.287 6 N -0.270 5.270 7 C 0.152 3.848 8 C 0.211 3.789 9 N -0.736 5.736 10 C 0.517 3.483 11 O -0.532 6.532 12 C -0.137 4.137 13 C -0.106 4.106 14 C -0.103 4.103 15 C -0.016 4.016 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 N -0.467 5.467 25 C 0.066 3.934 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.403 0.597 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.262 0.738 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.859 10.514 18.099 35.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.201 4.201 4 C -0.082 4.082 5 N -0.127 5.127 6 N -0.111 5.111 7 C -0.114 4.114 8 C 0.085 3.915 9 N -0.391 5.391 10 C 0.305 3.695 11 O -0.407 6.407 12 C -0.177 4.177 13 C -0.144 4.144 14 C -0.141 4.141 15 C -0.053 4.053 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 N -0.157 5.157 25 C -0.077 4.077 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -29.442 10.334 16.643 35.364 hybrid contribution 0.512 -1.222 0.988 1.652 sum -28.930 9.112 17.630 35.083 Atomic orbital electron populations 1.21812 0.92404 1.02469 1.03342 1.19641 0.97103 0.95936 0.90065 1.21822 1.01213 0.93709 1.03363 1.24910 0.96328 0.88818 0.98120 1.74277 1.19856 1.20938 0.97629 1.74341 1.09400 1.01653 1.25704 1.24670 1.04439 1.01641 0.80692 1.19400 0.80108 0.89782 1.02195 1.46114 1.08004 1.16451 1.68550 1.21127 0.87931 0.84919 0.75513 1.90725 1.81261 1.19658 1.49089 1.21782 0.90298 1.01939 1.03720 1.21497 0.95580 0.95941 1.01408 1.21481 0.92097 0.99854 1.00628 1.19577 0.95715 0.94328 0.95671 1.21185 0.91702 1.00058 1.42849 0.91115 1.25044 0.94829 0.98615 0.95126 1.69919 1.02215 1.35848 1.46518 0.86772 0.78287 0.84910 0.79313 1.20297 1.21464 1.18922 1.46057 1.38438 1.23198 1.08033 1.22220 1.01245 0.97543 0.86696 0.92602 0.91046 0.91235 0.89633 0.91226 0.92515 0.91028 0.89621 0.87823 0.76315 0.88712 0.88942 0.91769 0.91655 0.92796 0.92860 0.96628 0.97015 0.92818 0.89512 0.88530 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.18 37.16 0.34 -0.30 16 2 C -0.01 -0.03 3.27 -91.77 -0.30 -0.33 16 3 C -0.14 -0.66 9.18 37.16 0.34 -0.32 16 4 C 0.19 1.53 6.54 -154.99 -1.01 0.51 16 5 N -0.29 -3.37 12.21 32.79 0.40 -2.97 16 6 N -0.27 -3.38 12.21 32.79 0.40 -2.98 16 7 C 0.15 1.44 7.40 -154.99 -1.15 0.29 16 8 C 0.21 1.88 5.84 -5.20 -0.03 1.85 16 9 N -0.74 -6.76 5.55 -61.48 -0.34 -7.10 16 10 C 0.52 6.38 7.83 -10.99 -0.09 6.29 16 11 O -0.53 -8.65 15.98 5.55 0.09 -8.56 16 12 C -0.14 -1.64 5.70 -27.89 -0.16 -1.80 16 13 C -0.11 -1.73 4.50 -26.73 -0.12 -1.85 16 14 C -0.10 -2.00 5.15 -26.73 -0.14 -2.13 16 15 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 16 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.35 13.96 55.43 0.77 -27.57 16 20 Si 0.88 22.30 27.47 -169.99 -4.67 17.64 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 24 N -0.47 -3.32 3.15 -118.00 -0.37 -3.69 16 25 C 0.07 0.20 10.58 59.85 0.63 0.83 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.22 6.89 -51.93 -0.36 -0.13 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.66 7.88 -51.92 -0.41 0.25 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 3.04 8.46 -40.82 -0.35 2.69 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.09 8.10 -51.92 -0.42 0.67 16 39 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 43 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.10 0.27 7.83 -51.93 -0.41 -0.14 16 47 H 0.09 0.11 7.18 -51.93 -0.37 -0.27 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -36.97 388.83 -8.24 -45.21 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -8.16 Total: -4.79 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.22 Total: -11.04 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.86 Total: -44.32 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.97 -8.24 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588673948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.147 kcal (2) G-P(sol) polarization free energy of solvation -36.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds