Wall clock time and date at job start Fri Apr 10 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30519 * 126.34491 * 60.02520 * 4 2 1 6 6 N 1.28595 * 109.67515 * 179.97438 * 5 4 2 7 7 C 1.30520 * 109.67477 * 0.02562 * 6 5 4 8 8 C 1.50694 * 126.35007 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47590 * 89.97155 * 8 7 6 10 10 C 1.34775 * 120.00584 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99423 * 359.97438 * 10 9 8 12 12 C 1.50687 * 120.00267 * 179.97438 * 10 9 8 13 13 C 1.53005 * 109.47390 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47274 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46781 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46836 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99828 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00108 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47108 * 90.00193 * 20 18 16 22 22 H 1.48502 * 109.46982 * 210.00262 * 20 18 16 23 23 H 1.48500 * 109.46778 * 330.00086 * 20 18 16 24 24 N 1.35492 * 126.35123 * 239.71151 * 4 2 1 25 25 C 1.46506 * 126.97422 * 0.04168 * 24 4 2 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.09007 * 109.47186 * 209.97035 * 8 7 6 34 34 H 1.08996 * 109.47179 * 329.96845 * 8 7 6 35 35 H 0.97006 * 119.99622 * 359.97438 * 9 8 7 36 36 H 1.09002 * 109.47740 * 300.00166 * 12 10 9 37 37 H 1.09003 * 109.47589 * 60.00418 * 12 10 9 38 38 H 1.09008 * 109.46489 * 300.00183 * 13 12 10 39 39 H 1.08996 * 109.47269 * 59.99733 * 13 12 10 40 40 H 1.09000 * 109.46641 * 299.99422 * 14 13 12 41 41 H 1.08992 * 109.47221 * 59.99949 * 14 13 12 42 42 H 1.08993 * 109.47293 * 299.99657 * 15 14 13 43 43 H 1.09001 * 109.46952 * 60.00195 * 15 14 13 44 44 H 0.97002 * 120.00629 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.47024 * 89.99873 * 25 24 4 46 46 H 1.09005 * 109.46364 * 209.99284 * 25 24 4 47 47 H 1.08992 * 109.47224 * 329.99340 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7951 -0.3741 -2.4689 6 7 2.3800 -1.2005 -3.2617 7 6 3.0166 -2.1021 -2.5650 8 6 3.8273 -3.2474 -3.1145 9 7 5.2176 -2.8209 -3.2917 10 6 6.1316 -3.6859 -3.7742 11 8 5.8031 -4.8175 -4.0613 12 6 7.5615 -3.2470 -3.9570 13 6 8.3847 -4.4098 -4.5148 14 6 9.8367 -3.9643 -4.6997 15 6 10.6599 -5.1275 -5.2569 16 6 12.0899 -4.6885 -5.4397 17 1 12.3824 -3.6809 -5.1836 18 6 13.0248 -5.5732 -5.9338 19 7 14.2729 -5.1904 -6.0929 20 14 12.5187 -7.3158 -6.3774 21 1 12.0905 -7.3603 -7.7986 22 1 13.6707 -8.2316 -6.1786 23 1 11.3926 -7.7408 -5.5076 24 7 2.8190 -1.8133 -1.2560 25 6 3.3455 -2.5471 -0.1024 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.7903 -4.0856 -2.4186 34 1 3.4163 -3.5550 -4.0760 35 1 5.4803 -1.9159 -3.0617 36 1 7.5984 -2.4093 -4.6534 37 1 7.9727 -2.9386 -2.9957 38 1 8.3479 -5.2478 -3.8185 39 1 7.9735 -4.7179 -5.4760 40 1 9.8737 -3.1263 -5.3957 41 1 10.2476 -3.6566 -3.7383 42 1 10.6228 -5.9652 -4.5607 43 1 10.2491 -5.4355 -6.2184 44 1 14.9307 -5.8129 -6.4402 45 1 2.6395 -3.3258 0.1859 46 1 4.3004 -3.0020 -0.3662 47 1 3.4885 -1.8596 0.7311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588673948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:42 Heat of formation + Delta-G solvation = -14.562971 kcal Electronic energy + Delta-G solvation = -24386.062113 eV Core-core repulsion = 20796.292397 eV Total energy + Delta-G solvation = -3589.769716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.34279 -40.81146 -37.01608 -36.75162 -36.39728 -35.47042 -34.59811 -32.27101 -31.30342 -28.73903 -28.30461 -28.08673 -26.84342 -24.54865 -23.77264 -22.13175 -21.76558 -21.35733 -20.93562 -18.85019 -18.35510 -17.88616 -17.65166 -17.02216 -16.82041 -16.31637 -16.26744 -15.69383 -15.50591 -15.02677 -14.72122 -14.55254 -14.43757 -14.41000 -14.00781 -13.76854 -13.70148 -13.56322 -13.48681 -13.04834 -12.84247 -12.79954 -12.42659 -12.32679 -12.21436 -12.06930 -12.06299 -11.74660 -11.52337 -11.38475 -11.33550 -11.26136 -11.22964 -10.98383 -10.75375 -10.30145 -10.23590 -8.29007 -6.32191 0.52616 1.34730 1.35935 1.36850 1.49769 1.58551 1.60453 2.26645 2.36570 2.98580 3.06485 3.25023 3.63817 3.69521 3.78041 4.00288 4.03761 4.09251 4.17136 4.23143 4.29913 4.36458 4.55078 4.60968 4.64913 4.66079 4.74274 4.78298 4.78908 4.87552 4.91240 4.94501 4.95813 5.07158 5.16271 5.16585 5.21232 5.31294 5.31942 5.39062 5.62093 5.67308 5.69727 5.77064 6.30138 6.37551 6.76013 7.13798 7.32704 7.59016 8.87540 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.001882 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.641196 B =14871.021065 C =15154.965966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 C -0.140 4.140 4 C 0.193 3.807 5 N -0.331 5.331 6 N -0.315 5.315 7 C 0.154 3.846 8 C 0.216 3.784 9 N -0.718 5.718 10 C 0.523 3.477 11 O -0.575 6.575 12 C -0.131 4.131 13 C -0.097 4.097 14 C -0.095 4.095 15 C -0.017 4.017 16 C -0.531 4.531 17 H 0.036 0.964 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.250 1.250 24 N -0.461 5.461 25 C 0.055 3.945 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.413 0.587 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.012 0.988 44 H 0.266 0.734 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.275 10.051 20.380 37.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.075 4.075 5 N -0.171 5.171 6 N -0.156 5.156 7 C -0.114 4.114 8 C 0.091 3.909 9 N -0.373 5.373 10 C 0.311 3.689 11 O -0.454 6.454 12 C -0.170 4.170 13 C -0.136 4.136 14 C -0.133 4.133 15 C -0.055 4.055 16 C -0.569 4.569 17 H 0.054 0.946 18 C -0.194 4.194 19 N -0.592 5.592 20 Si 0.772 3.228 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.174 1.174 24 N -0.150 5.150 25 C -0.085 4.085 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -30.877 9.911 18.956 37.563 hybrid contribution 0.965 -0.976 0.345 1.415 sum -29.912 8.936 19.301 36.703 Atomic orbital electron populations 1.21795 0.92227 1.02315 1.03424 1.19888 0.97179 0.95965 0.89621 1.21803 1.01007 0.93597 1.03413 1.25526 0.95202 0.88619 0.98166 1.74183 1.21514 1.22102 0.99276 1.74236 1.10980 1.03021 1.27374 1.24588 1.04064 1.01105 0.81679 1.19362 0.79520 0.90075 1.01983 1.45898 1.07749 1.16471 1.67152 1.21079 0.88308 0.84448 0.75056 1.90718 1.81910 1.21500 1.51266 1.21680 0.89506 1.00465 1.05365 1.21291 0.93917 0.97400 1.00950 1.21347 0.93471 0.97917 1.00529 1.19581 0.93656 0.96231 0.96009 1.21563 0.94315 0.98736 1.42327 0.94568 1.26008 0.94725 1.03483 0.95147 1.70063 1.03571 1.37686 1.47865 0.85686 0.78468 0.79159 0.79514 1.19383 1.20754 1.17354 1.46252 1.37710 1.22864 1.08186 1.22611 1.01732 0.98334 0.85870 0.92861 0.93227 0.88883 0.86408 0.88922 0.92763 0.93228 0.87955 0.89254 0.75063 0.86998 0.86213 0.92458 0.92947 0.92724 0.92321 0.96543 0.96953 0.92547 0.87931 0.88035 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.18 71.98 0.66 -0.37 16 2 C -0.01 -0.04 3.27 -11.54 -0.04 -0.08 16 3 C -0.14 -1.04 9.18 71.98 0.66 -0.38 16 4 C 0.19 2.95 6.54 137.98 0.90 3.85 16 5 N -0.33 -7.89 12.21 -50.16 -0.61 -8.51 16 6 N -0.31 -8.00 12.21 -50.16 -0.61 -8.61 16 7 C 0.15 2.78 7.40 137.98 1.02 3.80 16 8 C 0.22 3.60 5.84 85.63 0.50 4.10 16 9 N -0.72 -11.83 5.55 -466.81 -2.59 -14.42 16 10 C 0.52 11.90 7.83 87.65 0.69 12.59 16 11 O -0.58 -18.07 15.98 -3.05 -0.05 -18.11 16 12 C -0.13 -2.78 5.70 29.85 0.17 -2.61 16 13 C -0.10 -3.01 4.50 30.60 0.14 -2.87 16 14 C -0.10 -3.57 5.15 30.60 0.16 -3.41 16 15 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 16 C -0.53 -31.23 9.66 25.60 0.25 -30.98 16 17 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 18 C 0.00 0.18 5.47 84.65 0.46 0.64 16 19 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 20 Si 0.95 45.72 27.47 68.60 1.88 47.60 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 24 N -0.46 -5.67 3.15 -527.25 -1.66 -7.33 16 25 C 0.06 0.15 10.58 127.77 1.35 1.50 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.12 0.13 6.89 -2.39 -0.02 0.11 16 30 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 1.39 7.88 -2.38 -0.02 1.37 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.41 5.28 8.46 -92.70 -0.78 4.49 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.85 8.10 -2.38 -0.02 1.83 16 39 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 43 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.10 0.23 7.83 -2.38 -0.02 0.21 16 47 H 0.12 -0.26 7.18 -2.39 -0.02 -0.27 16 Total: -1.00 -83.05 388.83 3.81 -79.24 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.11 Total: 5.29 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 7.04 Total: -14.93 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -5.18 Total: -99.09 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.05 Total: -18.11 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -83.05 3.81 -79.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588673948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.681 kcal (2) G-P(sol) polarization free energy of solvation -83.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds