Wall clock time and date at job start Fri Apr 10 2020 22:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.35495 * 126.97554 * 59.68767 * 4 2 1 6 6 N 1.30525 * 107.30455 * 179.83821 * 5 4 2 7 7 N 1.28592 * 109.67109 * 0.43561 * 6 5 4 8 8 C 1.30517 * 109.67504 * 359.72448 * 7 6 5 9 9 C 1.50705 * 126.34725 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47286 * 270.03904 * 9 8 7 11 11 C 1.46497 * 120.00222 * 270.00348 * 10 9 8 12 12 C 1.34771 * 119.99852 * 89.99801 * 10 9 8 13 13 O 1.21285 * 119.99912 * 0.02562 * 12 10 9 14 14 C 1.50695 * 120.00075 * 179.97438 * 12 10 9 15 15 C 1.53001 * 109.47242 * 180.02562 * 14 12 10 16 16 C 1.52995 * 109.47318 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47318 * 179.97438 * 16 15 14 18 18 C 1.50709 * 109.47088 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99786 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99793 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99861 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46888 * 60.00444 * 22 20 18 24 24 H 1.48502 * 109.46778 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47011 * 300.00380 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.07998 * 126.35141 * 359.97270 * 5 4 2 34 34 H 1.08994 * 109.47284 * 30.04036 * 9 8 7 35 35 H 1.09001 * 109.46681 * 150.03932 * 9 8 7 36 36 H 1.08997 * 109.47498 * 89.99688 * 11 10 9 37 37 H 1.08993 * 109.47366 * 209.99825 * 11 10 9 38 38 H 1.09001 * 109.46751 * 330.00088 * 11 10 9 39 39 H 1.08995 * 109.47679 * 300.00229 * 14 12 10 40 40 H 1.09000 * 109.47242 * 60.00821 * 14 12 10 41 41 H 1.08993 * 109.47387 * 300.00345 * 15 14 12 42 42 H 1.09007 * 109.46985 * 60.00318 * 15 14 12 43 43 H 1.08998 * 109.47815 * 300.00702 * 16 15 14 44 44 H 1.09007 * 109.47336 * 60.00416 * 16 15 14 45 45 H 1.08993 * 109.47387 * 300.00330 * 17 16 15 46 46 H 1.09000 * 109.46755 * 60.00592 * 17 16 15 47 47 H 0.97003 * 119.99114 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7750 -0.3567 -2.4865 6 7 2.3967 -1.2256 -3.2363 7 7 3.0029 -2.0829 -2.4938 8 6 2.8003 -1.7964 -1.2367 9 6 3.3363 -2.5553 -0.0501 10 7 2.3823 -3.5989 0.3337 11 6 1.3281 -3.3053 1.3077 12 6 2.4745 -4.8289 -0.2094 13 8 3.3475 -5.0720 -1.0154 14 6 1.4936 -5.9025 0.1858 15 6 1.8181 -7.1928 -0.5696 16 6 0.8219 -8.2827 -0.1689 17 6 1.1459 -9.5729 -0.9247 18 6 0.1642 -10.6462 -0.5305 19 1 -0.6134 -10.4295 0.1871 20 6 0.2587 -11.9046 -1.0858 21 7 1.2060 -12.1684 -1.9592 22 14 -0.9586 -13.2348 -0.5977 23 1 -2.3354 -12.7948 -0.9384 24 1 -0.6431 -14.4874 -1.3303 25 1 -0.8645 -13.4796 0.8640 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.1791 0.4755 -2.8309 34 1 4.2899 -3.0135 -0.3123 35 1 3.4801 -1.8696 0.7849 36 1 0.4424 -2.9425 0.7862 37 1 1.0793 -4.2125 1.8583 38 1 1.6782 -2.5426 2.0032 39 1 1.5643 -6.0823 1.2585 40 1 0.4825 -5.5801 -0.0628 41 1 1.7477 -7.0134 -1.6423 42 1 2.8293 -7.5151 -0.3206 43 1 0.8917 -8.4623 0.9039 44 1 -0.1892 -7.9603 -0.4182 45 1 1.0757 -9.3930 -1.9974 46 1 2.1569 -9.8955 -0.6758 47 1 1.2722 -13.0537 -2.3502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590048976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:59 Heat of formation + Delta-G solvation = 25.106789 kcal Electronic energy + Delta-G solvation = -25384.291450 eV Core-core repulsion = 21796.241944 eV Total energy + Delta-G solvation = -3588.049506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.38969 -39.89398 -37.20443 -35.93134 -34.86021 -32.72577 -32.14849 -31.49022 -29.72956 -28.15771 -27.88626 -26.66060 -25.12510 -24.14262 -22.41358 -21.74403 -20.75960 -19.97162 -19.12532 -17.68938 -16.96750 -16.70817 -16.14941 -16.03710 -15.76851 -15.65245 -15.09137 -14.72922 -14.41660 -13.99237 -13.70838 -13.54811 -13.40395 -13.21632 -13.05935 -12.88951 -12.69597 -12.40118 -12.22758 -12.10007 -11.90569 -11.60431 -11.53922 -11.48062 -10.93858 -10.50936 -10.48868 -10.48138 -10.47843 -10.36091 -9.89060 -9.56714 -9.44786 -9.16815 -9.05401 -8.94640 -8.26339 -5.91017 -3.93698 1.46159 2.06743 2.56701 2.71599 3.04023 3.37690 3.42037 3.44153 3.76478 3.98697 4.11288 4.13751 4.25006 4.39190 4.52036 4.65868 4.75790 4.76540 4.81917 4.92060 4.94585 5.01408 5.17371 5.19970 5.27731 5.31613 5.40042 5.41382 5.43848 5.44195 5.63177 5.86085 5.91250 6.12578 6.17721 6.34728 6.57955 6.58996 6.88576 7.05067 7.15171 7.25753 7.78234 7.95157 8.10641 8.19679 8.51852 8.59651 9.13819 9.69544 11.20255 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.002307 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.238927 B =12132.268753 C =12412.885822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 C -0.164 4.164 4 N -0.466 5.466 5 C 0.149 3.851 6 N -0.297 5.297 7 N -0.265 5.265 8 C 0.156 3.844 9 C 0.203 3.797 10 N -0.625 5.625 11 C 0.076 3.924 12 C 0.513 3.487 13 O -0.507 6.507 14 C -0.134 4.134 15 C -0.105 4.105 16 C -0.109 4.109 17 C 0.020 3.980 18 C -0.521 4.521 19 H 0.053 0.947 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.213 0.787 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 32.868 10.997 34.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.159 5.159 5 C -0.138 4.138 6 N -0.136 5.136 7 N -0.105 5.105 8 C -0.112 4.112 9 C 0.077 3.923 10 N -0.361 5.361 11 C -0.067 4.067 12 C 0.302 3.698 13 O -0.380 6.380 14 C -0.174 4.174 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.071 0.929 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.229 0.771 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.196 31.856 9.210 33.161 hybrid contribution -1.412 0.173 1.346 1.958 sum -1.216 32.028 10.556 33.745 Atomic orbital electron populations 1.22219 0.92531 1.03704 1.03818 1.21570 0.96028 0.94139 0.86006 1.22195 1.02346 0.93810 1.03803 1.46563 1.38368 1.22829 1.08166 1.26299 1.04049 1.03200 0.80283 1.74368 1.10135 1.02415 1.26691 1.74440 1.18499 1.18804 0.98766 1.25447 0.98142 0.89618 0.98040 1.19603 0.93840 0.88576 0.90240 1.48001 1.32516 1.10857 1.44752 1.21884 0.90308 1.02802 0.91684 1.21204 0.85957 0.82391 0.80296 1.90768 1.35136 1.80283 1.31798 1.21816 0.98232 0.94896 1.02447 1.21476 1.00715 0.92072 0.99988 1.21637 0.96895 0.96203 0.99918 1.19093 0.96852 0.90325 0.95462 1.21240 1.14141 0.95850 1.24664 0.92858 1.25048 0.95688 0.98648 0.95215 1.69973 1.32637 1.21645 1.29132 0.86673 0.81639 0.81206 0.78535 1.20315 1.21322 1.20314 0.91379 0.91392 0.89922 0.87896 0.89978 0.91523 0.91390 0.77061 0.86264 0.88987 0.93018 0.89806 0.91297 0.89103 0.89404 0.91719 0.91680 0.93528 0.93595 0.96559 0.96554 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.45 9.25 37.16 0.34 -0.10 16 2 C 0.13 0.45 3.57 -67.93 -0.24 0.21 16 3 C -0.16 -0.36 9.26 37.16 0.34 -0.02 16 4 N -0.47 -3.73 2.60 -108.21 -0.28 -4.02 16 5 C 0.15 1.42 11.81 -89.94 -1.06 0.35 16 6 N -0.30 -4.38 12.21 29.69 0.36 -4.02 16 7 N -0.26 -4.28 12.21 32.80 0.40 -3.88 16 8 C 0.16 1.80 7.61 -154.99 -1.18 0.62 16 9 C 0.20 1.91 5.64 -5.19 -0.03 1.88 16 10 N -0.62 -6.32 2.86 -182.96 -0.52 -6.85 16 11 C 0.08 0.44 10.19 59.85 0.61 1.05 16 12 C 0.51 7.46 7.67 -10.99 -0.08 7.37 16 13 O -0.51 -9.72 15.56 5.55 0.09 -9.64 16 14 C -0.13 -1.84 4.25 -27.88 -0.12 -1.96 16 15 C -0.10 -1.95 4.50 -26.73 -0.12 -2.07 16 16 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 18 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.05 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -27.98 13.29 55.43 0.74 -27.25 16 22 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.07 0.28 7.47 -51.93 -0.39 -0.10 16 27 H 0.07 0.19 7.97 -51.93 -0.41 -0.22 16 28 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.10 0.25 6.46 -51.93 -0.34 -0.09 16 30 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.15 7.98 -51.93 -0.41 -0.26 16 33 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.36 7.42 -51.93 -0.39 0.97 16 35 H 0.09 0.47 6.96 -51.93 -0.36 0.11 16 36 H 0.05 0.29 7.47 -51.93 -0.39 -0.10 16 37 H 0.08 0.45 6.44 -51.93 -0.33 0.12 16 38 H 0.07 0.19 7.61 -51.93 -0.40 -0.20 16 39 H 0.09 1.03 7.40 -51.93 -0.38 0.64 16 40 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 41 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 42 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -39.56 386.63 -8.62 -48.18 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -7.99 Total: -6.82 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.23 Total: -8.72 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.70 Total: -46.01 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.56 -8.62 -48.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590048976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.291 kcal (2) G-P(sol) polarization free energy of solvation -39.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds