Wall clock time and date at job start Fri Apr 10 2020 22:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.35495 * 126.97554 * 59.68767 * 4 2 1 6 6 N 1.30525 * 107.30455 * 179.83821 * 5 4 2 7 7 N 1.28592 * 109.67109 * 0.43561 * 6 5 4 8 8 C 1.30517 * 109.67504 * 359.72448 * 7 6 5 9 9 C 1.50705 * 126.34725 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47286 * 270.03904 * 9 8 7 11 11 C 1.46497 * 120.00222 * 270.00348 * 10 9 8 12 12 C 1.34771 * 119.99852 * 89.99801 * 10 9 8 13 13 O 1.21285 * 119.99912 * 0.02562 * 12 10 9 14 14 C 1.50695 * 120.00075 * 179.97438 * 12 10 9 15 15 C 1.53001 * 109.47242 * 180.02562 * 14 12 10 16 16 C 1.52995 * 109.47318 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47318 * 179.97438 * 16 15 14 18 18 C 1.50709 * 109.47088 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99786 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99793 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99861 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46888 * 60.00444 * 22 20 18 24 24 H 1.48502 * 109.46778 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47011 * 300.00380 * 22 20 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.07998 * 126.35141 * 359.97270 * 5 4 2 34 34 H 1.08994 * 109.47284 * 30.04036 * 9 8 7 35 35 H 1.09001 * 109.46681 * 150.03932 * 9 8 7 36 36 H 1.08997 * 109.47498 * 89.99688 * 11 10 9 37 37 H 1.08993 * 109.47366 * 209.99825 * 11 10 9 38 38 H 1.09001 * 109.46751 * 330.00088 * 11 10 9 39 39 H 1.08995 * 109.47679 * 300.00229 * 14 12 10 40 40 H 1.09000 * 109.47242 * 60.00821 * 14 12 10 41 41 H 1.08993 * 109.47387 * 300.00345 * 15 14 12 42 42 H 1.09007 * 109.46985 * 60.00318 * 15 14 12 43 43 H 1.08998 * 109.47815 * 300.00702 * 16 15 14 44 44 H 1.09007 * 109.47336 * 60.00416 * 16 15 14 45 45 H 1.08993 * 109.47387 * 300.00330 * 17 16 15 46 46 H 1.09000 * 109.46755 * 60.00592 * 17 16 15 47 47 H 0.97003 * 119.99114 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7750 -0.3567 -2.4865 6 7 2.3967 -1.2256 -3.2363 7 7 3.0029 -2.0829 -2.4938 8 6 2.8003 -1.7964 -1.2367 9 6 3.3363 -2.5553 -0.0501 10 7 2.3823 -3.5989 0.3337 11 6 1.3281 -3.3053 1.3077 12 6 2.4745 -4.8289 -0.2094 13 8 3.3475 -5.0720 -1.0154 14 6 1.4936 -5.9025 0.1858 15 6 1.8181 -7.1928 -0.5696 16 6 0.8219 -8.2827 -0.1689 17 6 1.1459 -9.5729 -0.9247 18 6 0.1642 -10.6462 -0.5305 19 1 -0.6134 -10.4295 0.1871 20 6 0.2587 -11.9046 -1.0858 21 7 1.2060 -12.1684 -1.9592 22 14 -0.9586 -13.2348 -0.5977 23 1 -2.3354 -12.7948 -0.9384 24 1 -0.6431 -14.4874 -1.3303 25 1 -0.8645 -13.4796 0.8640 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.1791 0.4755 -2.8309 34 1 4.2899 -3.0135 -0.3123 35 1 3.4801 -1.8696 0.7849 36 1 0.4424 -2.9425 0.7862 37 1 1.0793 -4.2125 1.8583 38 1 1.6782 -2.5426 2.0032 39 1 1.5643 -6.0823 1.2585 40 1 0.4825 -5.5801 -0.0628 41 1 1.7477 -7.0134 -1.6423 42 1 2.8293 -7.5151 -0.3206 43 1 0.8917 -8.4623 0.9039 44 1 -0.1892 -7.9603 -0.4182 45 1 1.0757 -9.3930 -1.9974 46 1 2.1569 -9.8955 -0.6758 47 1 1.2722 -13.0537 -2.3502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590048976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:08:58 Heat of formation + Delta-G solvation = -0.174577 kcal Electronic energy + Delta-G solvation = -25385.387732 eV Core-core repulsion = 21796.241944 eV Total energy + Delta-G solvation = -3589.145788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.17889 -40.94583 -37.71757 -36.94568 -36.51021 -34.65702 -32.99538 -32.23190 -31.34713 -28.84574 -28.24297 -27.77143 -26.59991 -24.72528 -24.06937 -22.57979 -21.82547 -21.36208 -20.07196 -18.44525 -18.24085 -17.91198 -17.53312 -17.03196 -16.66187 -16.46478 -16.24428 -16.02196 -15.42517 -14.79672 -14.64117 -14.53442 -14.31212 -13.97440 -13.73349 -13.66144 -13.59085 -13.41185 -13.35440 -13.17417 -12.92210 -12.77880 -12.47631 -12.36797 -12.35098 -12.15912 -12.14080 -12.04792 -11.39406 -11.35452 -11.30484 -11.16818 -11.10322 -10.87186 -10.54773 -10.33512 -9.89798 -8.18311 -6.31215 0.72395 1.39882 1.43996 1.44652 1.52504 1.66843 1.75242 2.18910 2.42147 3.14000 3.25578 3.49162 3.54704 3.69475 3.89029 3.90267 4.00283 4.05911 4.09608 4.27144 4.36813 4.47803 4.56939 4.59805 4.66647 4.68656 4.71297 4.76958 4.81746 4.82893 4.85123 4.94714 4.95803 5.11867 5.16667 5.25682 5.28623 5.31622 5.35559 5.43163 5.55682 5.76660 5.87226 5.99023 6.23781 6.25677 6.87125 7.16337 7.38421 7.75271 8.93913 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.002307 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.238927 B =12132.268753 C =12412.885822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.119 3.881 3 C -0.160 4.160 4 N -0.454 5.454 5 C 0.166 3.834 6 N -0.357 5.357 7 N -0.336 5.336 8 C 0.158 3.842 9 C 0.202 3.798 10 N -0.613 5.613 11 C 0.064 3.936 12 C 0.506 3.494 13 O -0.570 6.570 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.093 4.093 17 C 0.018 3.982 18 C -0.542 4.542 19 H 0.068 0.932 20 C -0.009 4.009 21 N -0.939 5.939 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.262 1.262 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.252 0.748 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.032 0.968 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.058 0.942 45 H -0.021 1.021 46 H -0.015 1.015 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 35.190 14.871 38.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 C -0.218 4.218 4 N -0.145 5.145 5 C -0.123 4.123 6 N -0.196 5.196 7 N -0.176 5.176 8 C -0.113 4.113 9 C 0.077 3.923 10 N -0.347 5.347 11 C -0.077 4.077 12 C 0.296 3.704 13 O -0.448 6.448 14 C -0.162 4.162 15 C -0.135 4.135 16 C -0.130 4.130 17 C -0.019 4.019 18 C -0.579 4.579 19 H 0.086 0.914 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.212 1.212 25 H -0.186 1.186 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.268 0.732 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.145 0.855 40 H 0.127 0.873 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.077 0.923 45 H -0.002 1.002 46 H 0.003 0.997 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.638 34.244 13.147 36.776 hybrid contribution -0.550 -0.427 0.164 0.716 sum -3.188 33.817 13.311 36.482 Atomic orbital electron populations 1.22235 0.91460 1.03188 1.05104 1.22042 0.96800 0.94753 0.84643 1.22203 1.01662 0.92865 1.05064 1.46804 1.37000 1.21659 1.09054 1.26954 1.02300 1.02499 0.80568 1.74219 1.12525 1.04219 1.28662 1.74311 1.21076 1.21022 1.01233 1.25627 0.98010 0.90404 0.97224 1.19808 0.92353 0.88868 0.91317 1.47958 1.33120 1.09351 1.44242 1.22292 0.89283 1.04741 0.91356 1.21360 0.85259 0.84045 0.79775 1.90755 1.37628 1.81669 1.34715 1.21680 0.98927 0.91963 1.03584 1.21256 0.99081 0.94314 0.98847 1.21425 0.97940 0.93651 0.99994 1.19060 0.95151 0.93573 0.94129 1.21718 1.14676 0.96589 1.24963 0.91362 1.26151 0.97822 1.01719 0.94953 1.70148 1.34857 1.22441 1.30507 0.85397 0.78925 0.77284 0.78799 1.18906 1.21152 1.18637 0.92722 0.91553 0.87277 0.85897 0.87482 0.92582 0.91413 0.73231 0.89122 0.83680 0.92288 0.88805 0.87222 0.85491 0.87261 0.94910 0.93619 0.91495 0.92323 1.00219 0.99673 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.22 9.25 71.98 0.67 0.45 16 2 C 0.12 0.39 3.57 44.99 0.16 0.55 16 3 C -0.16 -0.10 9.26 71.98 0.67 0.57 16 4 N -0.45 -6.42 2.60 -496.28 -1.29 -7.71 16 5 C 0.17 3.01 11.81 180.11 2.13 5.14 16 6 N -0.36 -11.06 12.21 -59.99 -0.73 -11.80 16 7 N -0.34 -11.54 12.21 -50.15 -0.61 -12.15 16 8 C 0.16 3.60 7.61 137.98 1.05 4.65 16 9 C 0.20 3.56 5.64 85.63 0.48 4.04 16 10 N -0.61 -11.20 2.86 -851.15 -2.43 -13.64 16 11 C 0.06 0.45 10.19 127.77 1.30 1.75 16 12 C 0.51 14.72 7.67 87.66 0.67 15.39 16 13 O -0.57 -23.34 15.56 -3.05 -0.05 -23.38 16 14 C -0.12 -3.18 4.25 29.85 0.13 -3.06 16 15 C -0.10 -3.73 4.50 30.59 0.14 -3.59 16 16 C -0.09 -3.91 5.15 30.59 0.16 -3.75 16 17 C 0.02 1.02 4.97 29.85 0.15 1.17 16 18 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 19 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 20 C -0.01 -0.57 5.46 84.65 0.46 -0.10 16 21 N -0.94 -60.60 13.29 21.45 0.28 -60.31 16 22 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 26 H 0.05 0.26 7.47 -2.39 -0.02 0.24 16 27 H 0.07 0.14 7.97 -2.39 -0.02 0.12 16 28 H 0.11 -0.38 8.14 -2.38 -0.02 -0.40 16 29 H 0.12 -0.08 6.46 -2.39 -0.02 -0.09 16 30 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.07 0.07 7.98 -2.39 -0.02 0.05 16 33 H 0.25 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.09 2.17 7.42 -2.39 -0.02 2.15 16 35 H 0.15 0.91 6.96 -2.39 -0.02 0.89 16 36 H 0.06 0.39 7.47 -2.39 -0.02 0.38 16 37 H 0.09 0.54 6.44 -2.39 -0.02 0.52 16 38 H 0.11 -0.07 7.61 -2.39 -0.02 -0.09 16 39 H 0.13 2.41 7.40 -2.39 -0.02 2.39 16 40 H 0.11 2.41 8.11 -2.39 -0.02 2.39 16 41 H 0.03 1.44 8.10 -2.39 -0.02 1.42 16 42 H 0.04 1.90 8.10 -2.38 -0.02 1.88 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 45 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 46 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 47 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -95.90 386.63 6.53 -89.38 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: 0.94 Total: 0.70 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 8.39 Total: -8.59 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -4.78 Total: -105.61 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.38 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -95.90 6.53 -89.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590048976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.203 kcal (2) G-P(sol) polarization free energy of solvation -95.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds