Wall clock time and date at job start Fri Apr 10 2020 22:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42909 * 113.99894 * 2 1 4 4 C 1.52998 * 109.47210 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46870 * 180.02562 * 4 3 2 6 6 N 1.29191 * 126.02916 * 90.02770 * 5 4 3 7 7 N 1.29099 * 110.27617 * 179.87784 * 6 5 4 8 8 C 1.32705 * 108.63010 * 359.96027 * 7 6 5 9 9 C 1.34114 * 126.02639 * 269.97598 * 5 4 3 10 10 C 1.50591 * 130.15114 * 0.38904 * 9 5 4 11 11 C 1.53592 * 107.77995 * 164.12784 * 10 9 5 12 12 N 1.46948 * 109.68094 * 48.98494 * 11 10 9 13 13 C 1.46900 * 110.99794 * 164.28730 * 12 11 10 14 14 C 1.52999 * 109.46912 * 200.35525 * 13 12 11 15 15 H 1.09005 * 109.47184 * 305.21848 * 14 13 12 16 16 C 1.52993 * 109.47421 * 185.21608 * 14 13 12 17 17 C 1.52995 * 109.47225 * 65.21383 * 14 13 12 18 18 C 1.50706 * 109.47261 * 185.00337 * 17 14 13 19 19 H 1.07992 * 119.99882 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99834 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00129 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99832 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47196 * 89.99875 * 22 20 18 24 24 H 1.48495 * 109.47284 * 209.99946 * 22 20 18 25 25 H 1.48503 * 109.47334 * 330.00336 * 22 20 18 26 26 C 1.47349 * 111.54846 * 288.64417 * 12 11 10 27 27 H 1.09001 * 109.47476 * 299.99283 * 1 2 3 28 28 H 1.08997 * 109.47516 * 59.99925 * 1 2 3 29 29 H 1.09002 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46665 * 60.00448 * 3 2 1 31 31 H 1.08996 * 109.46998 * 300.00591 * 3 2 1 32 32 H 1.09002 * 109.47148 * 60.00039 * 4 3 2 33 33 H 1.09003 * 109.46701 * 300.00022 * 4 3 2 34 34 H 1.09005 * 109.79295 * 283.72275 * 10 9 5 35 35 H 1.09000 * 109.79983 * 44.51822 * 10 9 5 36 36 H 1.08997 * 109.44799 * 288.91837 * 11 10 9 37 37 H 1.08993 * 109.43283 * 169.04150 * 11 10 9 38 38 H 1.09000 * 109.47237 * 80.35934 * 13 12 11 39 39 H 1.08994 * 109.47434 * 320.35400 * 13 12 11 40 40 H 1.09000 * 109.47428 * 174.56956 * 16 14 13 41 41 H 1.09006 * 109.47169 * 54.56958 * 16 14 13 42 42 H 1.09004 * 109.47300 * 294.57698 * 16 14 13 43 43 H 1.09002 * 109.47343 * 304.99949 * 17 14 13 44 44 H 1.09000 * 109.47476 * 65.00322 * 17 14 13 45 45 H 0.97003 * 119.99971 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.70868 * 170.90376 * 26 12 11 47 47 H 1.08997 * 109.71365 * 291.48809 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1311 2.5232 0.0000 6 7 4.4410 3.2165 1.0451 7 7 4.9484 4.3509 0.6951 8 6 4.9768 4.4118 -0.6302 9 6 4.4519 3.2443 -1.0843 10 6 4.2985 2.9195 -2.5468 11 6 4.4473 4.2286 -3.3361 12 7 5.6497 4.9437 -2.8864 13 6 6.0315 5.9876 -3.8468 14 6 7.5023 6.3558 -3.6420 15 1 7.6648 6.6377 -2.6016 16 6 7.8653 7.5312 -4.5515 17 6 8.3821 5.1528 -3.9877 18 6 9.8198 5.4739 -3.6696 19 1 10.0799 6.4395 -3.2621 20 6 10.8030 4.5352 -3.8999 21 7 10.4862 3.3594 -4.3967 22 14 12.5851 4.9334 -3.5063 23 1 12.8830 4.5384 -2.1061 24 1 13.4751 4.1868 -4.4312 25 1 12.8140 6.3917 -3.6685 26 6 5.4710 5.5076 -1.5368 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8901 31 1 1.6884 1.8465 -0.8899 32 1 3.8567 0.6440 -0.8909 33 1 3.8573 0.6437 0.8891 34 1 5.0718 2.2142 -2.8514 35 1 3.3139 2.4884 -2.7279 36 1 3.5702 4.8540 -3.1704 37 1 4.5357 4.0032 -4.3988 38 1 5.4109 6.8699 -3.6903 39 1 5.8876 5.6176 -4.8619 40 1 8.8835 7.8558 -4.3369 41 1 7.1756 8.3560 -4.3721 42 1 7.7953 7.2194 -5.5937 43 1 8.0645 4.2900 -3.4022 44 1 8.2869 4.9262 -5.0496 45 1 11.1780 2.6991 -4.5591 46 1 6.4236 5.8881 -1.1683 47 1 4.7404 6.3158 -1.5698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602673894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:21 Heat of formation + Delta-G solvation = 51.475001 kcal Electronic energy + Delta-G solvation = -25906.552009 eV Core-core repulsion = 22319.645915 eV Total energy + Delta-G solvation = -3586.906094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.36258 -38.57639 -38.29317 -35.24410 -35.08041 -32.51845 -31.37467 -30.75800 -29.73323 -27.04522 -26.89700 -26.30446 -24.39778 -24.12875 -23.04087 -22.28912 -21.08161 -19.71789 -18.81658 -17.70083 -16.88205 -16.61390 -16.26207 -16.21802 -15.54989 -15.10998 -14.77905 -14.59746 -14.37919 -14.19265 -13.80795 -13.51587 -13.16476 -12.82792 -12.49299 -12.47817 -12.17141 -12.11185 -11.89065 -11.85898 -11.69583 -11.39386 -11.27754 -11.17493 -10.82633 -10.76454 -10.62130 -10.30499 -10.27787 -10.12375 -10.03865 -9.62144 -9.06101 -8.83457 -8.74268 -8.21390 -7.91451 -5.86117 -3.85723 1.54531 2.03780 2.63989 3.37418 3.39663 3.45822 3.48568 3.93489 4.12499 4.29544 4.34573 4.57003 4.64296 4.71227 4.83015 4.83675 4.85613 4.98427 5.11072 5.18025 5.20209 5.24742 5.49704 5.50860 5.59706 5.65461 5.70067 5.78279 5.86970 5.97669 6.03011 6.07989 6.28256 6.28352 6.38468 6.44367 6.52384 6.60262 6.99518 7.04775 7.28193 7.35384 7.46695 7.87833 8.09495 8.22933 8.56573 8.60480 9.21978 9.76447 11.25133 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.003116 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.951407 B = 8982.369418 C = 9494.863006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.050 3.950 4 C 0.118 3.882 5 N -0.283 5.283 6 N -0.102 5.102 7 N -0.253 5.253 8 C -0.010 4.010 9 C -0.004 4.004 10 C -0.041 4.041 11 C 0.062 3.938 12 N -0.527 5.527 13 C 0.068 3.932 14 C -0.085 4.085 15 H 0.057 0.943 16 C -0.132 4.132 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.052 0.948 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.884 3.116 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.145 3.855 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.046 0.954 43 H 0.032 0.968 44 H 0.009 0.991 45 H 0.257 0.743 46 H 0.104 0.896 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.877 -3.701 3.979 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.028 4.028 4 C -0.004 4.004 5 N -0.076 5.076 6 N -0.079 5.079 7 N -0.118 5.118 8 C -0.151 4.151 9 C -0.138 4.138 10 C -0.080 4.080 11 C -0.067 4.067 12 N -0.251 5.251 13 C -0.059 4.059 14 C -0.104 4.104 15 H 0.075 0.925 16 C -0.190 4.190 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.070 0.930 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.712 3.288 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.200 1.200 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.027 0.973 45 H 0.066 0.934 46 H 0.122 0.878 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.314 -4.366 5.531 22.449 hybrid contribution 0.198 0.618 -0.826 1.050 sum -21.116 -3.748 4.705 21.956 Atomic orbital electron populations 1.22807 0.79803 1.03300 1.00413 1.87806 1.20646 1.26326 1.95575 1.22689 0.92318 0.85850 1.01937 1.21703 0.92387 0.78896 1.07382 1.46580 1.41223 1.14878 1.04941 1.78637 1.17960 1.00186 1.11128 1.74699 1.14617 1.10569 1.11922 1.21638 1.04704 0.97502 0.91232 1.21857 1.05630 0.93919 0.92410 1.20338 1.02462 0.99652 0.85588 1.22096 0.91606 0.93545 0.99477 1.61776 1.33030 1.28949 1.01393 1.22299 0.97825 0.90989 0.94776 1.21233 0.92262 0.97960 0.98914 0.92471 1.21695 1.01023 0.96701 0.99544 1.19044 0.92428 0.92246 0.96378 1.21322 0.92663 0.99619 1.41346 0.92987 1.24974 0.98571 0.95213 0.95674 1.69969 1.32775 1.05475 1.45402 0.86727 0.85680 0.78257 0.78103 1.20859 1.21450 1.20035 1.20337 1.01101 0.90723 0.86261 0.93701 0.93681 0.88975 0.91903 0.92273 0.86787 0.86576 0.88350 0.90304 0.94758 0.89241 0.95713 0.90972 0.92001 0.95284 0.93520 0.94948 0.97314 0.93353 0.87836 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.17 10.70 -35.23 -0.38 -3.54 16 3 C 0.05 0.40 6.26 37.16 0.23 0.63 16 4 C 0.12 1.08 6.63 -4.04 -0.03 1.06 16 5 N -0.28 -3.77 3.32 -57.25 -0.19 -3.96 16 6 N -0.10 -1.66 13.20 60.35 0.80 -0.87 16 7 N -0.25 -4.55 12.39 33.16 0.41 -4.14 16 8 C -0.01 -0.17 7.21 -83.15 -0.60 -0.77 16 9 C 0.00 -0.06 6.83 -82.51 -0.56 -0.62 16 10 C -0.04 -0.46 6.24 -27.63 -0.17 -0.63 16 11 C 0.06 0.75 5.52 -3.49 -0.02 0.74 16 12 N -0.53 -8.36 3.92 -235.35 -0.92 -9.28 16 13 C 0.07 1.09 4.40 -3.82 -0.02 1.07 16 14 C -0.08 -1.67 2.39 -90.63 -0.22 -1.89 16 15 H 0.06 1.17 6.87 -51.93 -0.36 0.81 16 16 C -0.13 -2.39 8.91 37.15 0.33 -2.06 16 17 C 0.04 0.91 4.39 -27.88 -0.12 0.79 16 18 C -0.51 -14.40 8.48 -34.44 -0.29 -14.69 16 19 H 0.05 1.44 7.06 -52.49 -0.37 1.06 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 22 Si 0.88 22.14 29.54 -169.99 -5.02 17.12 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 C 0.15 2.29 5.61 -4.80 -0.03 2.26 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.11 0.87 8.01 -51.93 -0.42 0.46 16 33 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.09 1.00 7.68 -51.93 -0.40 0.60 16 38 H 0.02 0.35 7.91 -51.93 -0.41 -0.06 16 39 H 0.07 1.12 7.64 -51.93 -0.40 0.72 16 40 H 0.06 1.22 7.12 -51.93 -0.37 0.85 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.03 0.89 7.63 -51.93 -0.40 0.50 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.10 1.80 6.98 -51.93 -0.36 1.44 16 47 H 0.05 0.70 8.01 -51.93 -0.42 0.28 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -33.93 377.89 -7.45 -41.38 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -8.10 Total: -4.61 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.48 Total: -11.31 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.83 Total: -44.74 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.38 Total: -3.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.93 -7.45 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602673894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.853 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds