Wall clock time and date at job start Fri Apr 10 2020 22:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47491 * 2 1 4 4 C 1.53003 * 109.47020 * 119.99545 * 2 1 3 5 5 C 1.50698 * 109.47167 * 295.00165 * 4 2 1 6 6 H 1.08001 * 120.00191 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00088 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00062 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00045 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47238 * 89.99520 * 9 7 5 11 11 H 1.48499 * 109.46998 * 209.99712 * 9 7 5 12 12 H 1.48500 * 109.46635 * 329.99465 * 9 7 5 13 13 C 1.52994 * 109.47181 * 239.99635 * 2 1 3 14 14 N 1.46900 * 109.47274 * 65.00292 * 13 2 1 15 15 C 1.46845 * 111.00045 * 65.79158 * 14 13 2 16 16 C 1.53166 * 109.55463 * 185.84196 * 15 14 13 17 17 C 1.53120 * 109.20873 * 300.85535 * 16 15 14 18 18 C 1.53123 * 109.21163 * 57.62805 * 17 16 15 19 19 H 1.08996 * 109.50077 * 62.25431 * 18 17 16 20 20 N 1.46496 * 109.50353 * 182.33634 * 18 17 16 21 21 C 1.35305 * 125.87036 * 34.70956 * 20 18 17 22 22 C 1.35355 * 106.17938 * 179.91002 * 21 20 18 23 23 C 1.50690 * 126.75491 * 180.12873 * 22 21 20 24 24 O 1.42895 * 109.47304 * 0.29521 * 23 22 21 25 25 N 1.33776 * 106.49211 * 0.35120 * 22 21 20 26 26 N 1.28639 * 108.88466 * 359.77736 * 25 22 21 27 27 C 1.46848 * 110.99918 * 189.99746 * 14 13 2 28 28 H 1.09001 * 109.47077 * 60.00100 * 1 2 3 29 29 H 1.09001 * 109.47491 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47116 * 300.00913 * 1 2 3 31 31 H 1.09003 * 109.47134 * 54.99554 * 4 2 1 32 32 H 1.09002 * 109.47518 * 174.99702 * 4 2 1 33 33 H 0.97004 * 120.00020 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47325 * 304.99948 * 13 2 1 35 35 H 1.09007 * 109.46981 * 185.00560 * 13 2 1 36 36 H 1.09003 * 109.45905 * 305.85870 * 15 14 13 37 37 H 1.09002 * 109.46166 * 65.83312 * 15 14 13 38 38 H 1.09004 * 109.59002 * 180.90917 * 16 15 14 39 39 H 1.08997 * 109.49280 * 60.74777 * 16 15 14 40 40 H 1.09002 * 109.52427 * 297.69078 * 17 16 15 41 41 H 1.08995 * 109.52208 * 177.56397 * 17 16 15 42 42 H 1.08009 * 126.91214 * 0.02562 * 21 20 18 43 43 H 1.09009 * 109.47362 * 120.29350 * 23 22 21 44 44 H 1.09003 * 109.47553 * 240.29239 * 23 22 21 45 45 H 0.96704 * 114.00537 * 180.02562 * 24 23 22 46 46 H 1.09006 * 109.46097 * 54.14433 * 27 14 13 47 47 H 1.08996 * 109.46046 * 294.17217 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9922 -0.4020 3.7284 8 7 1.6447 0.2776 4.7994 9 14 2.9626 -1.9886 3.9030 10 1 4.4161 -1.6851 3.8794 11 1 2.6144 -2.6427 5.1900 12 1 2.6287 -2.8993 2.7786 13 6 2.0400 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 2.3293 1.3393 -2.4864 16 6 1.7934 2.1597 -3.6635 17 6 2.0397 1.3927 -4.9657 18 6 1.3640 0.0214 -4.8782 19 1 0.2875 0.1525 -4.7687 20 7 1.6425 -0.7398 -6.0986 21 6 2.7895 -0.6975 -6.8150 22 6 2.6181 -1.5501 -7.8522 23 6 3.6150 -1.8602 -8.9388 24 8 4.8113 -1.1113 -8.7156 25 7 1.3876 -2.0596 -7.7255 26 7 0.8358 -1.5594 -6.6767 27 6 1.9125 -0.7357 -3.6666 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.6053 -1.7197 1.2954 32 1 3.1263 -0.7995 1.2057 33 1 1.8913 -0.0457 5.6801 34 1 1.6054 -1.7199 -1.2950 35 1 3.1263 -0.7996 -1.2054 36 1 2.1427 1.8751 -1.5557 37 1 3.4017 1.1867 -2.6088 38 1 2.3077 3.1199 -3.7040 39 1 0.7236 2.3244 -3.5349 40 1 3.1116 1.2618 -5.1143 41 1 1.6216 1.9520 -5.8025 42 1 3.6664 -0.1043 -6.6011 43 1 3.8457 -2.9255 -8.9271 44 1 3.1929 -1.5906 -9.9069 45 1 5.4989 -1.2614 -9.3788 46 1 1.4231 -1.7069 -3.5932 47 1 2.9868 -0.8783 -3.7833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602675429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:27 Heat of formation + Delta-G solvation = 41.574879 kcal Electronic energy + Delta-G solvation = -25683.147005 eV Core-core repulsion = 22095.811609 eV Total energy + Delta-G solvation = -3587.335396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.53658 -39.49001 -37.36804 -36.25830 -34.29548 -32.85963 -31.84674 -31.65439 -30.11381 -27.62661 -27.01623 -26.24077 -24.48954 -23.70841 -22.46549 -21.65997 -21.34275 -19.99043 -18.98837 -17.85310 -17.42858 -16.81309 -16.64254 -15.88818 -15.34772 -15.14403 -14.96996 -14.78912 -14.54526 -14.39431 -13.95308 -13.69991 -13.57556 -13.05977 -12.88815 -12.50586 -12.31854 -12.03661 -11.90594 -11.76596 -11.65140 -11.33311 -11.21323 -11.07029 -10.98542 -10.93375 -10.78374 -10.70637 -10.41439 -10.17690 -9.93632 -9.63525 -9.47786 -9.32035 -9.09529 -8.54023 -8.34172 -6.04479 -4.01631 1.39334 2.03635 2.24635 3.28927 3.37161 3.40360 3.44603 3.82650 3.98892 4.30047 4.42688 4.44441 4.53611 4.64019 4.76748 4.83601 4.88139 5.03557 5.10950 5.15919 5.26141 5.26804 5.29421 5.33839 5.42521 5.54498 5.60117 5.63821 5.74020 5.81759 5.86569 5.96727 6.00690 6.19656 6.32748 6.37268 6.52321 6.77541 6.94015 7.01702 7.11135 7.11556 7.14111 7.26774 7.44613 7.79656 8.29011 8.54277 9.00964 9.58375 11.08837 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.002633 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.281509 B =10632.718287 C =11016.282856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 H 0.064 0.936 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.060 3.940 14 N -0.527 5.527 15 C 0.044 3.956 16 C -0.111 4.111 17 C -0.128 4.128 18 C 0.147 3.853 19 H 0.124 0.876 20 N -0.283 5.283 21 C -0.019 4.019 22 C -0.038 4.038 23 C 0.169 3.831 24 O -0.572 6.572 25 N -0.266 5.266 26 N -0.078 5.078 27 C 0.050 3.950 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.016 0.984 32 H 0.007 0.993 33 H 0.262 0.738 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.094 0.906 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.190 0.810 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.389 0.611 46 H 0.085 0.915 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 0.674 -26.896 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 H 0.082 0.918 4 C -0.048 4.048 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.252 5.252 15 C -0.084 4.084 16 C -0.149 4.149 17 C -0.167 4.167 18 C 0.045 3.955 19 H 0.142 0.858 20 N -0.076 5.076 21 C -0.170 4.170 22 C -0.176 4.176 23 C 0.090 3.910 24 O -0.378 6.378 25 N -0.134 5.134 26 N -0.057 5.057 27 C -0.080 4.080 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.207 0.793 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.238 0.762 46 H 0.103 0.897 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.002 0.312 -26.096 26.270 hybrid contribution 2.795 -0.717 -0.151 2.889 sum 5.797 -0.405 -26.247 26.883 Atomic orbital electron populations 1.21600 0.95124 1.00728 1.00784 1.21048 0.96465 0.99128 0.92368 0.91818 1.19627 0.95355 0.96312 0.93485 1.21100 1.35410 1.09505 0.89022 0.90794 1.25026 0.95700 0.96857 0.95981 1.69913 1.47170 1.39245 0.98020 0.86819 0.80571 0.84571 0.77538 1.20456 1.21444 1.19092 1.22378 0.97803 0.97348 0.89161 1.61865 1.58664 1.03614 1.01043 1.22305 0.95655 0.90554 0.99866 1.21581 1.03125 0.98066 0.92136 1.22004 1.01110 0.93427 1.00172 1.21814 1.03984 0.90316 0.79392 0.85775 1.47585 1.10525 1.29340 1.20154 1.23253 0.93474 1.05178 0.95120 1.21614 0.95249 1.01012 0.99738 1.19855 0.82708 0.94975 0.93492 1.86366 1.26346 1.69504 1.55564 1.75002 1.06227 1.21162 1.11014 1.78345 1.18027 1.05196 1.04155 1.22322 0.99051 0.97419 0.89209 0.93651 0.94189 0.92131 0.96593 0.97427 0.92805 0.91006 0.95032 0.88731 0.94724 0.90193 0.90198 0.90864 0.90550 0.79270 0.91510 0.91541 0.76244 0.89694 0.94228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.89 37.16 0.33 -1.95 16 2 C -0.07 -1.32 2.26 -90.62 -0.20 -1.52 16 3 H 0.06 1.19 6.22 -51.93 -0.32 0.87 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.15 8.96 -34.44 -0.31 -14.45 16 6 H 0.07 2.19 7.30 -52.49 -0.38 1.81 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 9 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 13 C 0.06 0.91 4.35 -3.83 -0.02 0.90 16 14 N -0.53 -6.61 4.11 -234.58 -0.96 -7.58 16 15 C 0.04 0.48 5.30 -3.77 -0.02 0.46 16 16 C -0.11 -0.92 6.11 -26.58 -0.16 -1.09 16 17 C -0.13 -1.01 4.96 -26.61 -0.13 -1.14 16 18 C 0.15 1.45 3.29 -67.85 -0.22 1.22 16 19 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 20 N -0.28 -3.22 3.26 -54.68 -0.18 -3.40 16 21 C -0.02 -0.20 10.02 -17.05 -0.17 -0.37 16 22 C -0.04 -0.43 7.22 -82.78 -0.60 -1.02 16 23 C 0.17 1.24 7.67 36.00 0.28 1.52 16 24 O -0.57 -3.66 13.04 -35.23 -0.46 -4.12 16 25 N -0.27 -3.66 12.41 33.29 0.41 -3.25 16 26 N -0.08 -1.09 13.17 60.35 0.79 -0.30 16 27 C 0.05 0.56 5.07 -3.83 -0.02 0.54 16 28 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 31 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 32 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.07 1.10 7.99 -51.93 -0.41 0.69 16 35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.09 1.17 6.12 -51.93 -0.32 0.86 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.54 7.06 -51.93 -0.37 0.17 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.19 1.59 7.12 -52.48 -0.37 1.22 16 43 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.39 0.53 9.12 45.56 0.42 0.95 16 46 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 47 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -33.09 369.37 -7.27 -40.36 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.10 Total: -1.92 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.44 Total: -15.46 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.84 Total: -41.36 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.46 Total: -4.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.09 -7.27 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.939 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds