Wall clock time and date at job start Fri Apr 10 2020 22:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53002 * 109.46977 * 120.00624 * 2 1 3 5 5 C 1.50699 * 109.46619 * 294.99881 * 4 2 1 6 6 H 1.07993 * 120.00315 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99483 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99668 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00245 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47296 * 90.00237 * 9 7 5 11 11 H 1.48501 * 109.46960 * 210.00649 * 9 7 5 12 12 H 1.48501 * 109.47016 * 330.00175 * 9 7 5 13 13 C 1.53002 * 109.46941 * 240.00292 * 2 1 3 14 14 N 1.46904 * 109.47182 * 61.85161 * 13 2 1 15 15 C 1.46848 * 111.00034 * 176.31992 * 14 13 2 16 16 C 1.53038 * 109.52116 * 174.16269 * 15 14 13 17 17 C 1.53116 * 109.27917 * 59.18523 * 16 15 14 18 18 C 1.53120 * 109.15744 * 302.34299 * 17 16 15 19 19 H 1.09005 * 109.50249 * 297.67678 * 18 17 16 20 20 N 1.46501 * 109.50375 * 177.59865 * 18 17 16 21 21 C 1.35311 * 125.86771 * 324.99794 * 20 18 17 22 22 C 1.35347 * 106.17916 * 179.77572 * 21 20 18 23 23 C 1.50695 * 126.75610 * 180.20897 * 22 21 20 24 24 O 1.42904 * 109.46972 * 359.97438 * 23 22 21 25 25 N 1.33773 * 106.49239 * 0.22386 * 22 21 20 26 26 N 1.28631 * 108.88983 * 0.02562 * 25 22 21 27 27 C 1.46847 * 110.99444 * 52.11370 * 14 13 2 28 28 H 1.09000 * 109.47154 * 184.31095 * 1 2 3 29 29 H 1.08994 * 109.46805 * 304.31159 * 1 2 3 30 30 H 1.08998 * 109.46647 * 64.31377 * 1 2 3 31 31 H 1.09002 * 109.47111 * 54.99684 * 4 2 1 32 32 H 1.08996 * 109.46918 * 175.00177 * 4 2 1 33 33 H 0.97004 * 119.99837 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47033 * 301.85361 * 13 2 1 35 35 H 1.08994 * 109.47113 * 181.85460 * 13 2 1 36 36 H 1.09002 * 109.46093 * 54.14720 * 15 14 13 37 37 H 1.08997 * 109.46061 * 294.18120 * 15 14 13 38 38 H 1.08997 * 109.50037 * 299.23737 * 16 15 14 39 39 H 1.09001 * 109.49703 * 179.12505 * 16 15 14 40 40 H 1.08994 * 109.52028 * 182.44447 * 17 16 15 41 41 H 1.08995 * 109.57745 * 62.27494 * 17 16 15 42 42 H 1.08008 * 126.91199 * 0.03351 * 21 20 18 43 43 H 1.08998 * 109.47407 * 119.99689 * 23 22 21 44 44 H 1.09004 * 109.47101 * 239.99803 * 23 22 21 45 45 H 0.96706 * 114.00162 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46223 * 65.82657 * 27 14 13 47 47 H 1.08997 * 109.46663 * 305.84897 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9932 -0.4020 3.7282 8 7 1.6457 0.2774 4.7993 9 14 2.9635 -1.9887 3.9026 10 1 4.4169 -1.6854 3.8779 11 1 2.6160 -2.6424 5.1899 12 1 2.6288 -2.8997 2.7787 13 6 2.0400 -0.7212 -1.2493 14 7 1.5872 -0.0033 -2.4483 15 6 2.1309 -0.6176 -3.6663 16 6 1.5252 0.0624 -4.8962 17 6 1.8585 1.5565 -4.8634 18 6 1.3237 2.1621 -3.5627 19 1 0.2384 2.0640 -3.5349 20 7 1.6884 3.5795 -3.4969 21 6 2.8344 4.1258 -3.9652 22 6 2.7550 5.4512 -3.7029 23 6 3.7854 6.4995 -4.0351 24 8 4.8981 5.8839 -4.6872 25 7 1.5820 5.6476 -3.0906 26 7 0.9755 4.5186 -2.9805 27 6 1.9352 1.4213 -2.3713 28 1 -0.3633 -1.0248 0.0772 29 1 -0.3633 0.5793 0.8488 30 1 -0.3632 0.4454 -0.9261 31 1 1.6054 -1.7199 1.2950 32 1 3.1263 -0.7996 1.2055 33 1 1.8936 -0.0452 5.6799 34 1 1.6498 -1.7388 -1.2661 35 1 3.1295 -0.7501 -1.2329 36 1 1.8833 -1.6791 -3.6793 37 1 3.2141 -0.4973 -3.6812 38 1 0.4432 -0.0695 -4.8890 39 1 1.9407 -0.3834 -5.8000 40 1 1.3924 2.0524 -5.7147 41 1 2.9391 1.6907 -4.9103 42 1 3.6470 3.6088 -4.4541 43 1 3.3444 7.2461 -4.6954 44 1 4.1233 6.9805 -3.1171 45 1 5.6017 6.5009 -4.9310 46 1 3.0193 1.5320 -2.3925 47 1 1.5453 1.8408 -1.4439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602675431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:29 Heat of formation + Delta-G solvation = 18.263500 kcal Electronic energy + Delta-G solvation = -26102.084730 eV Core-core repulsion = 22513.738477 eV Total energy + Delta-G solvation = -3588.346253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.39095 -40.50156 -37.89291 -37.47537 -35.60843 -34.47138 -33.06834 -32.43361 -31.06438 -29.48165 -27.68686 -27.52179 -25.34109 -25.24046 -23.60394 -22.69633 -22.20368 -20.83482 -20.44113 -19.01966 -18.57410 -17.96395 -17.57212 -16.93989 -16.25400 -16.13041 -16.04537 -15.83510 -15.56880 -15.44144 -15.06472 -14.84985 -14.69583 -14.53638 -14.06175 -13.73033 -13.47523 -13.21618 -13.08377 -12.86949 -12.74345 -12.66413 -12.51916 -12.24095 -12.08542 -11.93722 -11.86031 -11.77332 -11.70255 -11.44902 -11.39151 -11.22419 -11.05711 -10.86035 -10.76231 -10.09804 -9.35304 -8.28480 -6.32026 0.54732 1.26454 1.33796 1.36267 1.39783 1.48151 2.35628 2.82951 2.93161 3.06550 3.26859 3.51472 3.74170 3.80160 3.91765 3.95683 4.07672 4.13082 4.19742 4.21867 4.34602 4.41434 4.46452 4.51100 4.54933 4.61866 4.66932 4.77017 4.80713 4.86106 4.87918 4.91656 5.00249 5.05182 5.07132 5.09457 5.31855 5.34678 5.36187 5.48765 5.56787 5.64659 5.68958 5.94260 6.12659 6.31380 6.75928 6.91667 7.31629 7.41015 8.88750 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.003478 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.342681 B = 8048.698909 C = 9133.060649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 H 0.040 0.960 4 C -0.004 4.004 5 C -0.522 4.522 6 H 0.026 0.974 7 C -0.001 4.001 8 N -0.956 5.956 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.241 1.241 13 C 0.072 3.928 14 N -0.529 5.529 15 C 0.044 3.956 16 C -0.102 4.102 17 C -0.120 4.120 18 C 0.148 3.852 19 H 0.116 0.884 20 N -0.279 5.279 21 C -0.016 4.016 22 C -0.050 4.050 23 C 0.174 3.826 24 O -0.581 6.581 25 N -0.297 5.297 26 N -0.118 5.118 27 C 0.049 3.951 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.014 0.986 33 H 0.265 0.735 34 H 0.091 0.909 35 H 0.034 0.966 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.216 0.784 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.411 0.589 46 H 0.039 0.961 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 2.130 -28.117 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 H 0.059 0.941 4 C -0.042 4.042 5 C -0.560 4.560 6 H 0.045 0.955 7 C -0.197 4.197 8 N -0.597 5.597 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.164 1.164 13 C -0.055 4.055 14 N -0.254 5.254 15 C -0.083 4.083 16 C -0.140 4.140 17 C -0.159 4.159 18 C 0.047 3.953 19 H 0.134 0.866 20 N -0.073 5.073 21 C -0.168 4.168 22 C -0.189 4.189 23 C 0.094 3.906 24 O -0.391 6.391 25 N -0.164 5.164 26 N -0.097 5.097 27 C -0.081 4.081 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.233 0.767 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.263 0.737 46 H 0.057 0.943 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.633 1.892 -27.168 27.625 hybrid contribution 2.180 0.151 0.808 2.330 sum 6.813 2.043 -26.360 27.302 Atomic orbital electron populations 1.21480 0.94889 1.00949 0.99828 1.21020 0.96653 0.98073 0.93696 0.94124 1.19549 0.95671 0.96059 0.92928 1.21443 1.34544 1.08510 0.91546 0.95532 1.26076 0.97042 1.01202 0.95381 1.70095 1.49060 1.41733 0.98786 0.85629 0.78944 0.79621 0.78259 1.19380 1.21152 1.16440 1.22104 0.97309 0.98139 0.87943 1.61865 1.60206 1.00209 1.03156 1.22359 0.97285 1.00042 0.88651 1.21539 1.02630 0.91928 0.97893 1.22014 1.02536 0.97679 0.93640 1.21916 1.02986 0.72142 0.98304 0.86584 1.47734 1.13048 1.09999 1.36495 1.23682 0.93092 0.94567 1.05442 1.22345 0.96455 0.95492 1.04617 1.19862 0.83869 0.89323 0.97497 1.86295 1.31586 1.40848 1.80352 1.74938 1.06910 1.17079 1.17456 1.78316 1.20990 0.91695 1.18650 1.22301 0.98057 0.90336 0.97357 0.93020 0.96153 0.91697 0.95702 0.96763 0.92652 0.89086 0.94751 0.88770 0.94116 0.90340 0.87429 0.89315 0.89701 0.76702 0.89949 0.90916 0.73717 0.94319 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.77 71.98 0.63 -3.76 16 2 C -0.08 -2.94 1.85 -10.79 -0.02 -2.96 16 3 H 0.04 1.74 6.08 -2.39 -0.01 1.72 16 4 C 0.00 -0.20 3.52 29.85 0.10 -0.09 16 5 C -0.52 -30.81 9.02 25.60 0.23 -30.58 16 6 H 0.03 1.75 7.30 -2.91 -0.02 1.73 16 7 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 8 N -0.96 -61.78 13.96 21.45 0.30 -61.48 16 9 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 13 C 0.07 2.07 4.54 86.30 0.39 2.46 16 14 N -0.53 -12.32 4.01 -896.35 -3.59 -15.91 16 15 C 0.04 0.67 5.46 86.33 0.47 1.15 16 16 C -0.10 -1.09 6.09 30.65 0.19 -0.91 16 17 C -0.12 -1.55 4.98 30.67 0.15 -1.39 16 18 C 0.15 3.12 3.29 45.05 0.15 3.27 16 19 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 20 N -0.28 -7.23 3.26 -326.90 -1.06 -8.30 16 21 C -0.02 -0.37 10.03 83.49 0.84 0.47 16 22 C -0.05 -1.26 7.22 41.59 0.30 -0.96 16 23 C 0.17 2.81 7.67 71.23 0.55 3.36 16 24 O -0.58 -7.38 13.04 -148.98 -1.94 -9.32 16 25 N -0.30 -9.60 12.41 -48.61 -0.60 -10.20 16 26 N -0.12 -3.93 13.17 37.02 0.49 -3.44 16 27 C 0.05 1.25 4.60 86.33 0.40 1.65 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.02 0.90 7.08 -2.39 -0.02 0.88 16 30 H 0.06 2.20 7.48 -2.39 -0.02 2.18 16 31 H 0.02 1.12 7.20 -2.39 -0.02 1.11 16 32 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 33 H 0.26 15.95 8.31 -92.71 -0.77 15.17 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 37 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.94 7.06 -2.39 -0.02 0.92 16 42 H 0.22 3.50 7.12 -2.91 -0.02 3.48 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 45 H 0.41 0.93 9.12 -74.05 -0.68 0.26 16 46 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 2.11 5.74 -2.39 -0.01 2.10 16 Total: -1.00 -78.69 368.29 0.54 -78.15 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.23 Total: 11.72 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 4.84 Total: -27.90 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -4.47 Total: -99.33 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -1.94 Total: -9.32 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -78.69 0.54 -78.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.416 kcal (2) G-P(sol) polarization free energy of solvation -78.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds