Wall clock time and date at job start Fri Apr 10 2020 22:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46834 * 2 1 4 4 C 1.52998 * 109.46953 * 240.00477 * 2 1 3 5 5 C 1.50706 * 109.47265 * 64.99722 * 4 2 1 6 6 H 1.07997 * 119.99770 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99831 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47087 * 60.00139 * 9 7 5 11 11 H 1.48500 * 109.47388 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47280 * 300.00109 * 9 7 5 13 13 C 1.52993 * 109.47286 * 120.00159 * 2 1 3 14 14 N 1.46894 * 109.47657 * 293.78846 * 13 2 1 15 15 C 1.46841 * 111.00462 * 80.42520 * 14 13 2 16 16 C 1.53035 * 109.53046 * 174.16538 * 15 14 13 17 17 C 1.53118 * 109.27728 * 59.17675 * 16 15 14 18 18 C 1.53116 * 109.16102 * 302.35168 * 17 16 15 19 19 H 1.09000 * 109.50443 * 297.70659 * 18 17 16 20 20 N 1.46503 * 109.50199 * 177.59655 * 18 17 16 21 21 C 1.35314 * 125.86687 * 324.99474 * 20 18 17 22 22 C 1.35356 * 106.17237 * 180.02562 * 21 20 18 23 23 C 1.50705 * 126.74762 * 179.97438 * 22 21 20 24 24 O 1.42902 * 109.47222 * 359.97438 * 23 22 21 25 25 N 1.33765 * 106.49943 * 359.97438 * 22 21 20 26 26 N 1.28635 * 108.88532 * 359.73852 * 25 22 21 27 27 C 1.46853 * 110.99881 * 316.21575 * 14 13 2 28 28 H 1.09008 * 109.47416 * 321.01325 * 1 2 3 29 29 H 1.08998 * 109.47257 * 201.02009 * 1 2 3 30 30 H 1.08997 * 109.47762 * 81.01397 * 1 2 3 31 31 H 1.08997 * 109.47110 * 184.99829 * 4 2 1 32 32 H 1.09000 * 109.46992 * 304.99676 * 4 2 1 33 33 H 0.97003 * 119.99974 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47276 * 53.79018 * 13 2 1 35 35 H 1.09002 * 109.47390 * 173.78145 * 13 2 1 36 36 H 1.09007 * 109.46585 * 294.18339 * 15 14 13 37 37 H 1.09003 * 109.46222 * 54.15141 * 15 14 13 38 38 H 1.09000 * 109.50559 * 179.12402 * 16 15 14 39 39 H 1.09002 * 109.49832 * 299.24314 * 16 15 14 40 40 H 1.09000 * 109.52137 * 62.25327 * 17 16 15 41 41 H 1.09001 * 109.52211 * 182.38280 * 17 16 15 42 42 H 1.07995 * 126.91555 * 0.02731 * 21 20 18 43 43 H 1.08997 * 109.47088 * 119.99719 * 23 22 21 44 44 H 1.08999 * 109.46811 * 239.99479 * 23 22 21 45 45 H 0.96699 * 113.99677 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.46095 * 305.85512 * 27 14 13 47 47 H 1.09002 * 109.45920 * 65.82089 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0798 0.9743 -2.3757 7 6 1.9931 -0.4014 -3.7283 8 7 2.6762 -1.5184 -3.8513 9 14 1.4994 0.5637 -5.2495 10 1 2.0916 1.9241 -5.1864 11 1 1.9953 -0.1356 -6.4620 12 1 0.0195 0.6704 -5.3095 13 6 2.0400 -0.7212 1.2492 14 7 1.6766 0.0522 2.4440 15 6 0.2797 -0.1926 2.8246 16 6 -0.0204 0.5118 4.1497 17 6 0.2293 2.0141 3.9915 18 6 1.6774 2.2389 3.5479 19 1 2.3553 1.8691 4.3172 20 7 1.9083 3.6705 3.3387 21 6 1.0071 4.5564 2.8549 22 6 1.6349 5.7553 2.8266 23 6 1.0536 7.0668 2.3650 24 8 -0.2979 6.8676 1.9456 25 7 2.8728 5.5469 3.2889 26 7 3.0012 4.3027 3.5890 27 6 1.9283 1.4846 2.2402 28 1 -0.3634 0.7988 0.6466 29 1 -0.3634 -0.9593 0.3686 30 1 -0.3634 0.1605 -1.0150 31 1 3.1262 -0.7993 -1.2057 32 1 1.6053 -1.7197 -1.2952 33 1 2.9241 -1.8409 -4.7319 34 1 1.5887 -1.7119 1.3065 35 1 3.1243 -0.8187 1.1953 36 1 -0.3814 0.1952 2.0494 37 1 0.1166 -1.2643 2.9381 38 1 -1.0617 0.3427 4.4241 39 1 0.6308 0.1147 4.9284 40 1 -0.4488 2.4189 3.2402 41 1 0.0575 2.5143 4.9446 42 1 -0.0085 4.3489 2.5523 43 1 1.0777 7.7838 3.1857 44 1 1.6400 7.4504 1.5301 45 1 -0.7358 7.6717 1.6346 46 1 2.9626 1.6309 1.9291 47 1 1.2596 1.8645 1.4678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602675436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:34 Heat of formation + Delta-G solvation = 48.299635 kcal Electronic energy + Delta-G solvation = -26405.445703 eV Core-core repulsion = 22818.401915 eV Total energy + Delta-G solvation = -3587.043789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.36378 -39.71919 -37.20288 -36.16862 -34.09672 -32.83098 -31.61257 -31.32765 -30.04767 -27.06491 -26.90827 -26.65941 -24.33939 -23.86201 -22.36858 -21.63215 -21.23431 -19.92694 -18.94132 -17.78435 -17.27636 -16.57301 -16.38710 -15.57196 -15.27464 -15.03850 -14.84883 -14.74438 -14.51230 -14.27119 -14.17787 -13.73148 -13.40671 -12.80852 -12.46330 -12.34154 -12.24869 -11.90444 -11.74654 -11.72268 -11.41041 -11.21384 -11.11862 -10.97990 -10.89137 -10.77746 -10.73615 -10.65428 -10.54767 -10.21959 -9.98360 -9.76308 -9.46362 -9.15063 -9.14105 -8.38626 -7.94954 -6.03164 -4.05302 1.57000 2.21093 2.42242 3.29908 3.34958 3.37039 3.62218 4.00433 4.13912 4.42682 4.46307 4.57453 4.66562 4.80646 4.90394 4.97310 5.03735 5.20987 5.25955 5.31103 5.31673 5.35842 5.43143 5.50780 5.56461 5.63623 5.73045 5.79451 5.82710 5.85997 5.90190 5.97828 6.09383 6.14611 6.26964 6.43814 6.54294 6.72996 6.88142 7.02095 7.17943 7.25655 7.29134 7.61090 7.74932 7.95068 8.38286 8.46002 9.00306 9.58551 11.07886 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.004021 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.477975 B = 6962.242239 C = 8518.601393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 H 0.060 0.940 4 C 0.031 3.969 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.059 3.941 14 N -0.530 5.530 15 C 0.026 3.974 16 C -0.111 4.111 17 C -0.129 4.129 18 C 0.146 3.854 19 H 0.120 0.880 20 N -0.282 5.282 21 C -0.017 4.017 22 C -0.038 4.038 23 C 0.169 3.831 24 O -0.571 6.571 25 N -0.266 5.266 26 N -0.080 5.080 27 C 0.046 3.954 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.015 0.985 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.190 0.810 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.389 0.611 46 H 0.085 0.915 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 10.325 16.902 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 H 0.078 0.922 4 C -0.006 4.006 5 C -0.556 4.556 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C -0.068 4.068 14 N -0.253 5.253 15 C -0.102 4.102 16 C -0.149 4.149 17 C -0.167 4.167 18 C 0.044 3.956 19 H 0.138 0.862 20 N -0.075 5.075 21 C -0.168 4.168 22 C -0.176 4.176 23 C 0.090 3.910 24 O -0.377 6.377 25 N -0.134 5.134 26 N -0.059 5.059 27 C -0.083 4.083 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.207 0.793 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.237 0.763 46 H 0.104 0.896 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.984 9.277 17.859 20.995 hybrid contribution -1.884 1.254 -2.219 3.170 sum -7.869 10.532 15.639 20.431 Atomic orbital electron populations 1.22089 0.96534 0.99021 1.02187 1.21867 0.95304 1.00174 0.96848 0.92177 1.19057 0.96114 0.95386 0.90054 1.21162 1.35032 1.08305 0.91092 0.92862 1.24998 0.95215 0.95035 0.99059 1.69945 1.38721 1.21117 1.23600 0.86711 0.78868 0.80198 0.82565 1.20296 1.21241 1.20284 1.22434 1.01176 0.96448 0.86707 1.62167 1.21289 1.05560 1.36328 1.22687 0.89933 1.01055 0.96520 1.21554 1.01994 0.92691 0.98664 1.21984 0.93561 0.98831 1.02348 1.21814 0.99701 0.73236 1.00830 0.86173 1.47538 1.09026 1.10243 1.40710 1.23250 0.99099 0.89171 1.05304 1.21594 0.92425 0.96129 1.07416 1.19853 0.82377 0.90404 0.98381 1.86377 1.25704 1.38775 1.86808 1.74974 1.16236 1.07256 1.14973 1.78310 1.07875 0.99867 1.19837 1.22384 1.03115 0.89212 0.93633 0.94684 0.93753 0.91114 0.96627 0.96541 0.92938 0.90846 0.90665 0.91878 0.90298 0.90506 0.90732 0.90724 0.90721 0.79274 0.91659 0.91471 0.76319 0.89629 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.51 37.16 0.28 -2.18 16 2 C -0.12 -2.34 1.82 -90.63 -0.16 -2.50 16 3 H 0.06 1.21 6.06 -51.93 -0.31 0.90 16 4 C 0.03 0.78 4.45 -27.88 -0.12 0.66 16 5 C -0.52 -14.24 8.11 -34.44 -0.28 -14.52 16 6 H 0.05 1.44 7.26 -52.49 -0.38 1.05 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 0.95 5.14 -3.83 -0.02 0.93 16 14 N -0.53 -7.04 4.86 -234.68 -1.14 -8.18 16 15 C 0.03 0.28 4.67 -3.84 -0.02 0.27 16 16 C -0.11 -0.95 6.09 -26.65 -0.16 -1.11 16 17 C -0.13 -1.16 4.97 -26.61 -0.13 -1.29 16 18 C 0.15 1.66 3.29 -67.85 -0.22 1.44 16 19 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 20 N -0.28 -3.75 3.26 -54.69 -0.18 -3.93 16 21 C -0.02 -0.22 10.03 -17.04 -0.17 -0.39 16 22 C -0.04 -0.50 7.22 -82.78 -0.60 -1.10 16 23 C 0.17 1.59 7.67 36.01 0.28 1.86 16 24 O -0.57 -4.85 13.04 -35.23 -0.46 -5.30 16 25 N -0.27 -4.17 12.41 33.29 0.41 -3.75 16 26 N -0.08 -1.26 13.17 60.35 0.79 -0.47 16 27 C 0.05 0.62 3.88 -3.83 -0.01 0.61 16 28 H 0.03 0.52 5.29 -51.92 -0.27 0.25 16 29 H 0.04 0.71 7.41 -51.93 -0.38 0.32 16 30 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 34 H 0.07 1.14 7.64 -51.92 -0.40 0.75 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.06 0.75 4.15 -51.93 -0.22 0.54 16 37 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.67 7.06 -51.93 -0.37 0.30 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.19 2.03 7.12 -52.49 -0.37 1.65 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.39 1.32 9.12 45.56 0.42 1.73 16 46 H 0.09 1.31 8.12 -51.93 -0.42 0.89 16 47 H 0.06 0.84 5.56 -51.93 -0.29 0.55 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -32.68 362.11 -7.55 -40.23 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.70 Total: 1.03 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.45 Total: -15.76 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.63 Total: -42.20 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.46 Total: -5.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.68 -7.55 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.528 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds