Wall clock time and date at job start Fri Apr 10 2020 22:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46834 * 2 1 4 4 C 1.52998 * 109.46953 * 240.00477 * 2 1 3 5 5 C 1.50706 * 109.47265 * 64.99722 * 4 2 1 6 6 H 1.07997 * 119.99770 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99831 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47087 * 60.00139 * 9 7 5 11 11 H 1.48500 * 109.47388 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47280 * 300.00109 * 9 7 5 13 13 C 1.52993 * 109.47286 * 120.00159 * 2 1 3 14 14 N 1.46894 * 109.47657 * 293.78846 * 13 2 1 15 15 C 1.46841 * 111.00462 * 80.42520 * 14 13 2 16 16 C 1.53035 * 109.53046 * 174.16538 * 15 14 13 17 17 C 1.53118 * 109.27728 * 59.17675 * 16 15 14 18 18 C 1.53116 * 109.16102 * 302.35168 * 17 16 15 19 19 H 1.09000 * 109.50443 * 297.70659 * 18 17 16 20 20 N 1.46503 * 109.50199 * 177.59655 * 18 17 16 21 21 C 1.35314 * 125.86687 * 324.99474 * 20 18 17 22 22 C 1.35356 * 106.17237 * 180.02562 * 21 20 18 23 23 C 1.50705 * 126.74762 * 179.97438 * 22 21 20 24 24 O 1.42902 * 109.47222 * 359.97438 * 23 22 21 25 25 N 1.33765 * 106.49943 * 359.97438 * 22 21 20 26 26 N 1.28635 * 108.88532 * 359.73852 * 25 22 21 27 27 C 1.46853 * 110.99881 * 316.21575 * 14 13 2 28 28 H 1.09008 * 109.47416 * 321.01325 * 1 2 3 29 29 H 1.08998 * 109.47257 * 201.02009 * 1 2 3 30 30 H 1.08997 * 109.47762 * 81.01397 * 1 2 3 31 31 H 1.08997 * 109.47110 * 184.99829 * 4 2 1 32 32 H 1.09000 * 109.46992 * 304.99676 * 4 2 1 33 33 H 0.97003 * 119.99974 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47276 * 53.79018 * 13 2 1 35 35 H 1.09002 * 109.47390 * 173.78145 * 13 2 1 36 36 H 1.09007 * 109.46585 * 294.18339 * 15 14 13 37 37 H 1.09003 * 109.46222 * 54.15141 * 15 14 13 38 38 H 1.09000 * 109.50559 * 179.12402 * 16 15 14 39 39 H 1.09002 * 109.49832 * 299.24314 * 16 15 14 40 40 H 1.09000 * 109.52137 * 62.25327 * 17 16 15 41 41 H 1.09001 * 109.52211 * 182.38280 * 17 16 15 42 42 H 1.07995 * 126.91555 * 0.02731 * 21 20 18 43 43 H 1.08997 * 109.47088 * 119.99719 * 23 22 21 44 44 H 1.08999 * 109.46811 * 239.99479 * 23 22 21 45 45 H 0.96699 * 113.99677 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.46095 * 305.85512 * 27 14 13 47 47 H 1.09002 * 109.45920 * 65.82089 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0798 0.9743 -2.3757 7 6 1.9931 -0.4014 -3.7283 8 7 2.6762 -1.5184 -3.8513 9 14 1.4994 0.5637 -5.2495 10 1 2.0916 1.9241 -5.1864 11 1 1.9953 -0.1356 -6.4620 12 1 0.0195 0.6704 -5.3095 13 6 2.0400 -0.7212 1.2492 14 7 1.6766 0.0522 2.4440 15 6 0.2797 -0.1926 2.8246 16 6 -0.0204 0.5118 4.1497 17 6 0.2293 2.0141 3.9915 18 6 1.6774 2.2389 3.5479 19 1 2.3553 1.8691 4.3172 20 7 1.9083 3.6705 3.3387 21 6 1.0071 4.5564 2.8549 22 6 1.6349 5.7553 2.8266 23 6 1.0536 7.0668 2.3650 24 8 -0.2979 6.8676 1.9456 25 7 2.8728 5.5469 3.2889 26 7 3.0012 4.3027 3.5890 27 6 1.9283 1.4846 2.2402 28 1 -0.3634 0.7988 0.6466 29 1 -0.3634 -0.9593 0.3686 30 1 -0.3634 0.1605 -1.0150 31 1 3.1262 -0.7993 -1.2057 32 1 1.6053 -1.7197 -1.2952 33 1 2.9241 -1.8409 -4.7319 34 1 1.5887 -1.7119 1.3065 35 1 3.1243 -0.8187 1.1953 36 1 -0.3814 0.1952 2.0494 37 1 0.1166 -1.2643 2.9381 38 1 -1.0617 0.3427 4.4241 39 1 0.6308 0.1147 4.9284 40 1 -0.4488 2.4189 3.2402 41 1 0.0575 2.5143 4.9446 42 1 -0.0085 4.3489 2.5523 43 1 1.0777 7.7838 3.1857 44 1 1.6400 7.4504 1.5301 45 1 -0.7358 7.6717 1.6346 46 1 2.9626 1.6309 1.9291 47 1 1.2596 1.8645 1.4678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602675436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:33 Heat of formation + Delta-G solvation = 23.452167 kcal Electronic energy + Delta-G solvation = -26406.523170 eV Core-core repulsion = 22818.401915 eV Total energy + Delta-G solvation = -3588.121256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.38393 -40.81679 -37.90458 -37.40115 -35.50948 -34.34398 -32.90631 -32.42954 -31.06165 -28.88176 -28.10255 -27.59650 -25.52954 -25.18325 -23.77740 -22.68933 -22.20725 -21.01707 -20.32582 -18.79275 -18.39100 -17.95244 -17.59388 -16.71920 -16.52037 -16.30325 -15.96999 -15.73699 -15.58880 -15.47918 -15.27060 -14.82368 -14.45328 -14.21060 -13.94150 -13.69324 -13.41204 -13.21163 -12.98751 -12.88896 -12.71181 -12.67966 -12.48299 -12.33515 -12.26110 -12.06711 -11.85789 -11.70420 -11.64754 -11.50156 -11.36371 -11.21563 -11.08942 -10.94048 -10.56885 -10.08568 -9.17153 -8.20851 -6.30794 0.54789 1.26394 1.36050 1.38153 1.39966 1.45948 2.37839 2.86433 2.97114 3.11947 3.27782 3.53135 3.76738 3.80985 3.93714 3.98473 4.11246 4.15280 4.17665 4.24190 4.29286 4.35513 4.51638 4.55345 4.55702 4.63465 4.66373 4.69586 4.78472 4.86515 4.88354 4.98652 5.02628 5.07000 5.08291 5.19364 5.26026 5.36759 5.46320 5.49175 5.57816 5.72700 5.83168 5.95833 6.12817 6.24881 6.84533 6.92423 7.37522 7.40803 8.90098 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.004021 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.477975 B = 6962.242239 C = 8518.601393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 H 0.047 0.953 4 C 0.036 3.964 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.956 3.044 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.070 3.930 14 N -0.523 5.523 15 C 0.020 3.980 16 C -0.101 4.101 17 C -0.122 4.122 18 C 0.149 3.851 19 H 0.121 0.879 20 N -0.279 5.279 21 C -0.018 4.018 22 C -0.049 4.049 23 C 0.173 3.827 24 O -0.583 6.583 25 N -0.294 5.294 26 N -0.114 5.114 27 C 0.053 3.947 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.041 0.959 31 H -0.017 1.017 32 H -0.005 1.005 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.211 0.789 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.410 0.590 46 H 0.057 0.943 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 11.454 17.976 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.130 4.130 3 H 0.065 0.935 4 C -0.001 4.001 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.058 4.058 14 N -0.246 5.246 15 C -0.106 4.106 16 C -0.140 4.140 17 C -0.160 4.160 18 C 0.048 3.952 19 H 0.139 0.861 20 N -0.072 5.072 21 C -0.169 4.169 22 C -0.188 4.188 23 C 0.093 3.907 24 O -0.392 6.392 25 N -0.161 5.161 26 N -0.093 5.093 27 C -0.077 4.077 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.002 0.998 32 H 0.013 0.987 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.228 0.772 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.262 0.738 46 H 0.076 0.924 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.530 10.428 18.951 23.251 hybrid contribution -1.102 0.901 -2.556 2.926 sum -9.632 11.329 16.395 22.133 Atomic orbital electron populations 1.21993 0.94608 1.01027 1.01196 1.21686 0.96797 0.98908 0.95653 0.93452 1.18944 0.94005 0.94772 0.92411 1.21567 1.34659 1.08478 0.92260 0.92611 1.25893 0.95210 0.96021 1.02486 1.70079 1.40011 1.22813 1.24385 0.85638 0.79080 0.78684 0.78512 1.19750 1.20829 1.18959 1.22206 1.00259 0.96884 0.86483 1.62172 1.23364 1.05026 1.34080 1.22831 0.87847 1.02101 0.97865 1.21543 1.03764 0.91690 0.96977 1.22010 0.91310 0.99472 1.03246 1.21897 1.01807 0.72173 0.99325 0.86062 1.47694 1.08629 1.10761 1.40147 1.23654 0.99729 0.88877 1.04655 1.22301 0.91755 0.98011 1.06683 1.19887 0.82853 0.88706 0.99213 1.86312 1.25175 1.40754 1.86977 1.74917 1.17751 1.07486 1.15982 1.78257 1.09142 1.00365 1.21492 1.22241 1.01181 0.89584 0.94704 0.91730 0.92235 0.93971 0.99845 0.98666 0.92868 0.90008 0.92255 0.92319 0.89455 0.87759 0.90216 0.90115 0.89077 0.77214 0.89819 0.90887 0.73763 0.92407 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 7.51 71.98 0.54 -3.89 16 2 C -0.11 -4.30 1.82 -10.80 -0.02 -4.32 16 3 H 0.05 1.95 6.06 -2.39 -0.01 1.94 16 4 C 0.04 1.88 4.45 29.85 0.13 2.01 16 5 C -0.53 -29.90 8.11 25.60 0.21 -29.69 16 6 H 0.06 3.04 7.26 -2.91 -0.02 3.02 16 7 C 0.00 0.09 5.46 84.65 0.46 0.56 16 8 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 9 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.07 2.24 5.14 86.30 0.44 2.68 16 14 N -0.52 -13.32 4.86 -896.38 -4.35 -17.68 16 15 C 0.02 0.40 4.67 86.33 0.40 0.80 16 16 C -0.10 -1.34 6.09 30.65 0.19 -1.15 16 17 C -0.12 -1.78 4.97 30.67 0.15 -1.63 16 18 C 0.15 3.20 3.29 45.04 0.15 3.35 16 19 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 20 N -0.28 -7.19 3.26 -326.93 -1.06 -8.26 16 21 C -0.02 -0.42 10.03 83.49 0.84 0.42 16 22 C -0.05 -1.24 7.22 41.60 0.30 -0.94 16 23 C 0.17 2.92 7.67 71.24 0.55 3.46 16 24 O -0.58 -8.40 13.04 -148.98 -1.94 -10.34 16 25 N -0.29 -9.20 12.41 -48.60 -0.60 -9.80 16 26 N -0.11 -3.62 13.17 37.02 0.49 -3.13 16 27 C 0.05 1.40 3.88 86.32 0.34 1.74 16 28 H 0.06 1.79 5.29 -2.38 -0.01 1.78 16 29 H 0.06 1.81 7.41 -2.39 -0.02 1.79 16 30 H 0.04 1.66 6.64 -2.39 -0.02 1.64 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.08 2.50 7.64 -2.38 -0.02 2.48 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.21 4.15 -2.38 -0.01 1.20 16 37 H 0.09 1.60 7.93 -2.39 -0.02 1.58 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.13 7.06 -2.39 -0.02 1.11 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.21 3.93 7.12 -2.91 -0.02 3.91 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.41 1.65 9.12 -74.06 -0.68 0.98 16 46 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 47 H 0.04 1.29 5.56 -2.39 -0.01 1.28 16 Total: -1.00 -73.10 362.11 -0.19 -73.29 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.30 Total: 12.58 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 4.68 Total: -26.61 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -5.25 Total: -95.44 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.94 Total: -10.34 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -73.10 -0.19 -73.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.744 kcal (2) G-P(sol) polarization free energy of solvation -73.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds