Wall clock time and date at job start Fri Apr 10 2020 22:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46762 * 2 1 4 4 C 1.50697 * 109.47004 * 240.00179 * 2 1 3 5 5 N 1.29949 * 126.28930 * 59.68540 * 4 2 1 6 6 O 1.21301 * 110.24773 * 179.84500 * 5 4 2 7 7 C 1.33640 * 109.81249 * 0.42399 * 6 5 4 8 8 C 1.50705 * 126.54968 * 179.76013 * 7 6 5 9 9 H 1.08994 * 109.47072 * 194.97540 * 8 7 6 10 10 C 1.52994 * 109.47024 * 74.97662 * 8 7 6 11 11 N 1.46900 * 109.46785 * 314.97421 * 8 7 6 12 12 C 1.46946 * 111.00510 * 303.79853 * 11 8 7 13 13 C 1.53046 * 109.36902 * 176.81201 * 12 11 8 14 14 N 1.46962 * 109.36298 * 58.40299 * 13 12 11 15 15 C 1.46897 * 111.00349 * 176.81522 * 14 13 12 16 16 C 1.50697 * 109.47077 * 58.98747 * 15 14 13 17 17 H 1.07996 * 119.99993 * 4.99139 * 16 15 14 18 18 C 1.37882 * 119.99988 * 184.99196 * 16 15 14 19 19 N 1.31512 * 119.99947 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99819 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47119 * 90.00371 * 20 18 16 22 22 H 1.48496 * 109.47025 * 210.00025 * 20 18 16 23 23 H 1.48495 * 109.47162 * 330.00173 * 20 18 16 24 24 C 1.46962 * 110.88005 * 300.68315 * 14 13 12 25 25 C 1.46961 * 110.99653 * 179.97438 * 11 8 7 26 26 N 1.31131 * 106.90107 * 359.74092 * 7 6 5 27 27 H 1.09008 * 109.47431 * 299.99739 * 1 2 3 28 28 H 1.09007 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47707 * 59.99809 * 1 2 3 30 30 H 1.09002 * 109.47082 * 119.99957 * 2 1 3 31 31 H 1.08997 * 109.47382 * 60.00048 * 3 2 1 32 32 H 1.09004 * 109.47011 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47287 * 299.99831 * 3 2 1 34 34 H 1.09003 * 109.47385 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47476 * 300.00027 * 10 8 7 36 36 H 1.09002 * 109.47543 * 60.00223 * 10 8 7 37 37 H 1.09004 * 109.48770 * 296.78417 * 12 11 8 38 38 H 1.09007 * 109.48734 * 56.84483 * 12 11 8 39 39 H 1.09002 * 109.49102 * 298.44047 * 13 12 11 40 40 H 1.09000 * 109.51206 * 178.37757 * 13 12 11 41 41 H 1.08995 * 109.47764 * 178.99566 * 15 14 13 42 42 H 1.09009 * 109.46502 * 298.99182 * 15 14 13 43 43 H 0.97003 * 120.00089 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.48392 * 299.35479 * 24 14 13 45 45 H 1.08998 * 109.48981 * 179.28606 * 24 14 13 46 46 H 1.08995 * 109.49201 * 303.16243 * 25 11 8 47 47 H 1.09004 * 109.48672 * 63.20146 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7902 -0.3779 -2.4632 6 8 2.3408 -1.1481 -3.2215 7 6 2.9990 -2.0783 -2.5235 8 6 3.8062 -3.2194 -3.0870 9 1 3.9985 -3.9509 -2.3022 10 6 5.1359 -2.6868 -3.6247 11 7 3.0570 -3.8572 -4.1779 12 6 1.7338 -4.3016 -3.7187 13 6 0.9567 -4.8869 -4.9001 14 7 1.7149 -6.0068 -5.4752 15 6 0.9659 -6.6446 -6.5661 16 6 0.6785 -5.6272 -7.6400 17 1 1.0866 -4.6303 -7.5625 18 6 -0.1054 -5.9691 -8.7216 19 7 -0.3558 -5.0813 -9.6590 20 14 -0.8118 -7.6932 -8.8552 21 1 -2.1408 -7.7363 -8.1939 22 1 -0.9595 -8.0580 -10.2871 23 1 0.1031 -8.6559 -8.1909 24 6 3.0383 -5.5624 -5.9345 25 6 3.8155 -4.9767 -4.7534 26 7 2.8087 -1.8084 -1.2544 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 5.7195 -3.5120 -4.0327 35 1 4.9436 -1.9553 -4.4095 36 1 5.6917 -2.2136 -2.8152 37 1 1.8533 -5.0637 -2.9485 38 1 1.1870 -3.4524 -3.3087 39 1 0.8137 -4.1172 -5.6585 40 1 -0.0142 -5.2437 -4.5564 41 1 1.5571 -7.4586 -6.9856 42 1 0.0265 -7.0398 -6.1793 43 1 -0.9076 -5.3217 -10.4197 44 1 2.9188 -4.8002 -6.7046 45 1 3.5850 -6.4116 -6.3444 46 1 4.7861 -4.6196 -5.0976 47 1 3.9593 -5.7464 -3.9951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609260041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:18 Heat of formation + Delta-G solvation = 77.295892 kcal Electronic energy + Delta-G solvation = -26386.082216 eV Core-core repulsion = 22800.295800 eV Total energy + Delta-G solvation = -3585.786417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.59281 -39.19528 -36.98805 -36.26685 -34.52624 -32.77034 -31.82409 -30.94558 -30.09673 -27.81705 -27.52409 -25.45707 -24.71304 -24.28714 -22.85903 -22.25015 -21.33032 -19.82387 -19.13671 -18.09072 -17.49379 -16.84016 -16.04333 -15.88021 -15.21618 -14.65710 -14.55533 -14.41586 -14.32715 -14.18272 -13.71568 -13.47452 -12.87957 -12.70544 -12.63934 -12.56006 -12.45915 -12.21643 -11.98516 -11.90441 -11.80895 -11.62781 -11.39414 -11.29954 -11.24873 -11.02087 -10.92893 -10.78386 -10.56333 -10.28510 -10.17824 -9.94430 -9.86124 -9.49073 -8.59330 -8.34359 -7.24569 -6.09824 -4.09986 1.13289 2.15340 2.78577 3.27266 3.30170 3.35244 3.38453 3.77147 4.09003 4.39393 4.52938 4.72430 4.73910 4.78532 4.87548 4.97506 5.11938 5.17542 5.22866 5.28511 5.41145 5.45460 5.47539 5.48613 5.55060 5.58009 5.64970 5.73316 5.78407 5.82640 5.85348 5.87896 5.93656 6.01810 6.03421 6.19723 6.47684 6.72181 6.78019 6.88043 7.00726 7.05292 7.13257 7.54368 8.00801 8.04286 8.17831 8.44658 8.94059 9.52606 11.02970 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.003274 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.440131 B = 8550.333996 C = 9271.532778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.002 4.002 3 C -0.144 4.144 4 C 0.168 3.832 5 N -0.381 5.381 6 O 0.098 5.902 7 C 0.200 3.800 8 C 0.173 3.827 9 H 0.085 0.915 10 C -0.148 4.148 11 N -0.529 5.529 12 C 0.060 3.940 13 C 0.065 3.935 14 N -0.537 5.537 15 C 0.155 3.845 16 C -0.552 4.552 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.061 3.939 25 C 0.060 3.940 26 N -0.487 5.487 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 7.337 18.755 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 C -0.203 4.203 4 C -0.105 4.105 5 N -0.087 5.087 6 O 0.039 5.961 7 C -0.021 4.021 8 C 0.062 3.938 9 H 0.103 0.897 10 C -0.206 4.206 11 N -0.256 5.256 12 C -0.068 4.068 13 C -0.064 4.064 14 N -0.261 5.261 15 C 0.029 3.971 16 C -0.590 4.590 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.068 4.068 25 C -0.067 4.067 26 N -0.221 5.221 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.188 7.988 18.799 22.006 hybrid contribution -0.528 -0.951 -0.377 1.151 sum 7.660 7.037 18.422 21.156 Atomic orbital electron populations 1.21857 0.92854 1.02717 1.02975 1.19524 0.96441 0.95275 0.90957 1.21846 1.01359 0.94087 1.02966 1.25785 0.96938 0.93064 0.94704 1.74622 1.17012 1.14346 1.02727 1.85398 1.46686 1.29366 1.34662 1.28571 0.94172 0.93851 0.85518 1.20116 0.91151 0.88689 0.93820 0.89700 1.21947 0.93736 1.02841 1.02046 1.62230 1.03448 1.30757 1.29121 1.22260 0.89003 0.97829 0.97733 1.21917 0.95516 0.93878 0.95040 1.62638 1.03193 1.27115 1.33161 1.20144 0.93364 0.95032 0.88587 1.21701 1.32251 0.99752 1.05339 0.90414 1.24974 0.95657 0.96943 0.95447 1.69931 1.38329 1.34347 1.10934 0.86812 0.79975 0.85417 0.77264 1.20260 1.21342 1.18912 1.21975 0.90626 0.99228 0.94930 1.22334 0.96781 0.90276 0.97356 1.71881 1.17962 1.14323 1.17972 0.91137 0.92211 0.91718 0.88236 0.91140 0.92374 0.91778 0.90052 0.90555 0.91586 0.94179 0.92136 0.92218 0.91221 0.95409 0.95721 0.92694 0.92510 0.90959 0.90089 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.17 37.16 0.34 -0.96 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -1.19 9.18 37.16 0.34 -0.84 16 4 C 0.17 2.24 6.72 -156.37 -1.05 1.19 16 5 N -0.38 -5.76 12.16 30.90 0.38 -5.39 16 6 O 0.10 1.53 11.12 18.11 0.20 1.73 16 7 C 0.20 2.75 5.65 -13.05 -0.07 2.68 16 8 C 0.17 2.07 2.62 -68.87 -0.18 1.89 16 9 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 10 C -0.15 -1.41 8.95 37.15 0.33 -1.07 16 11 N -0.53 -7.68 4.57 -227.89 -1.04 -8.72 16 12 C 0.06 0.95 5.34 -3.77 -0.02 0.93 16 13 C 0.07 1.27 5.24 -3.77 -0.02 1.25 16 14 N -0.54 -10.85 4.92 -235.91 -1.16 -12.01 16 15 C 0.16 3.66 4.21 -4.98 -0.02 3.64 16 16 C -0.55 -15.13 8.21 -34.44 -0.28 -15.41 16 17 H 0.08 2.34 6.07 -52.49 -0.32 2.02 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 20 Si 0.88 21.25 27.37 -169.99 -4.65 16.59 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.26 -6.14 6.69 56.52 0.38 -5.76 16 24 C 0.06 1.10 5.32 -3.77 -0.02 1.08 16 25 C 0.06 0.83 5.32 -3.77 -0.02 0.81 16 26 N -0.49 -6.78 11.55 -9.87 -0.11 -6.90 16 27 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.66 6.33 -51.93 -0.33 0.33 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.98 6.72 -51.92 -0.35 0.63 16 39 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.66 7.52 -51.93 -0.39 0.27 16 42 H 0.02 0.59 7.29 -51.92 -0.38 0.21 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 1.19 6.78 -51.93 -0.35 0.84 16 45 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 46 H 0.08 0.93 6.14 -51.93 -0.32 0.61 16 47 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -31.08 367.08 -9.03 -40.10 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.86 Total: -1.29 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.08 Total: -3.18 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -1.17 Total: -59.48 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.20 Total: 1.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.65 Total: 16.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.08 -9.03 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609260041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.400 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds