Wall clock time and date at job start Fri Apr 10 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46762 * 2 1 4 4 C 1.50697 * 109.47004 * 240.00179 * 2 1 3 5 5 N 1.29949 * 126.28930 * 59.68540 * 4 2 1 6 6 O 1.21301 * 110.24773 * 179.84500 * 5 4 2 7 7 C 1.33640 * 109.81249 * 0.42399 * 6 5 4 8 8 C 1.50705 * 126.54968 * 179.76013 * 7 6 5 9 9 H 1.08994 * 109.47072 * 194.97540 * 8 7 6 10 10 C 1.52994 * 109.47024 * 74.97662 * 8 7 6 11 11 N 1.46900 * 109.46785 * 314.97421 * 8 7 6 12 12 C 1.46946 * 111.00510 * 303.79853 * 11 8 7 13 13 C 1.53046 * 109.36902 * 176.81201 * 12 11 8 14 14 N 1.46962 * 109.36298 * 58.40299 * 13 12 11 15 15 C 1.46897 * 111.00349 * 176.81522 * 14 13 12 16 16 C 1.50697 * 109.47077 * 58.98747 * 15 14 13 17 17 H 1.07996 * 119.99993 * 4.99139 * 16 15 14 18 18 C 1.37882 * 119.99988 * 184.99196 * 16 15 14 19 19 N 1.31512 * 119.99947 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99819 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47119 * 90.00371 * 20 18 16 22 22 H 1.48496 * 109.47025 * 210.00025 * 20 18 16 23 23 H 1.48495 * 109.47162 * 330.00173 * 20 18 16 24 24 C 1.46962 * 110.88005 * 300.68315 * 14 13 12 25 25 C 1.46961 * 110.99653 * 179.97438 * 11 8 7 26 26 N 1.31131 * 106.90107 * 359.74092 * 7 6 5 27 27 H 1.09008 * 109.47431 * 299.99739 * 1 2 3 28 28 H 1.09007 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47707 * 59.99809 * 1 2 3 30 30 H 1.09002 * 109.47082 * 119.99957 * 2 1 3 31 31 H 1.08997 * 109.47382 * 60.00048 * 3 2 1 32 32 H 1.09004 * 109.47011 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47287 * 299.99831 * 3 2 1 34 34 H 1.09003 * 109.47385 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47476 * 300.00027 * 10 8 7 36 36 H 1.09002 * 109.47543 * 60.00223 * 10 8 7 37 37 H 1.09004 * 109.48770 * 296.78417 * 12 11 8 38 38 H 1.09007 * 109.48734 * 56.84483 * 12 11 8 39 39 H 1.09002 * 109.49102 * 298.44047 * 13 12 11 40 40 H 1.09000 * 109.51206 * 178.37757 * 13 12 11 41 41 H 1.08995 * 109.47764 * 178.99566 * 15 14 13 42 42 H 1.09009 * 109.46502 * 298.99182 * 15 14 13 43 43 H 0.97003 * 120.00089 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.48392 * 299.35479 * 24 14 13 45 45 H 1.08998 * 109.48981 * 179.28606 * 24 14 13 46 46 H 1.08995 * 109.49201 * 303.16243 * 25 11 8 47 47 H 1.09004 * 109.48672 * 63.20146 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7902 -0.3779 -2.4632 6 8 2.3408 -1.1481 -3.2215 7 6 2.9990 -2.0783 -2.5235 8 6 3.8062 -3.2194 -3.0870 9 1 3.9985 -3.9509 -2.3022 10 6 5.1359 -2.6868 -3.6247 11 7 3.0570 -3.8572 -4.1779 12 6 1.7338 -4.3016 -3.7187 13 6 0.9567 -4.8869 -4.9001 14 7 1.7149 -6.0068 -5.4752 15 6 0.9659 -6.6446 -6.5661 16 6 0.6785 -5.6272 -7.6400 17 1 1.0866 -4.6303 -7.5625 18 6 -0.1054 -5.9691 -8.7216 19 7 -0.3558 -5.0813 -9.6590 20 14 -0.8118 -7.6932 -8.8552 21 1 -2.1408 -7.7363 -8.1939 22 1 -0.9595 -8.0580 -10.2871 23 1 0.1031 -8.6559 -8.1909 24 6 3.0383 -5.5624 -5.9345 25 6 3.8155 -4.9767 -4.7534 26 7 2.8087 -1.8084 -1.2544 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 5.7195 -3.5120 -4.0327 35 1 4.9436 -1.9553 -4.4095 36 1 5.6917 -2.2136 -2.8152 37 1 1.8533 -5.0637 -2.9485 38 1 1.1870 -3.4524 -3.3087 39 1 0.8137 -4.1172 -5.6585 40 1 -0.0142 -5.2437 -4.5564 41 1 1.5571 -7.4586 -6.9856 42 1 0.0265 -7.0398 -6.1793 43 1 -0.9076 -5.3217 -10.4197 44 1 2.9188 -4.8002 -6.7046 45 1 3.5850 -6.4116 -6.3444 46 1 4.7861 -4.6196 -5.0976 47 1 3.9593 -5.7464 -3.9951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609260041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:17 Heat of formation + Delta-G solvation = 52.999632 kcal Electronic energy + Delta-G solvation = -26387.135781 eV Core-core repulsion = 22800.295800 eV Total energy + Delta-G solvation = -3586.839981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.66776 -40.50612 -37.90120 -37.67167 -35.57810 -34.61287 -33.20226 -32.21384 -31.34519 -29.50585 -28.19637 -26.83672 -25.78025 -25.54862 -24.15374 -23.56171 -22.78819 -20.95923 -20.52721 -19.19429 -18.88633 -18.53337 -17.33332 -16.91809 -16.34504 -16.08812 -15.95247 -15.83024 -15.70013 -15.26797 -14.90103 -14.45866 -14.39258 -14.29445 -13.84819 -13.67326 -13.60146 -13.24228 -13.14705 -12.86576 -12.82771 -12.72116 -12.64174 -12.51085 -12.35714 -12.26438 -12.14837 -12.13897 -12.03811 -11.89874 -11.74363 -11.68451 -11.43200 -10.95205 -10.78203 -9.47809 -9.02043 -8.30211 -6.35665 0.05778 1.12381 1.36333 1.37270 1.49539 1.76605 2.29524 2.34393 2.77582 3.04850 3.08409 3.27933 3.64533 3.86482 3.89504 3.96188 4.01157 4.12355 4.16349 4.26575 4.32850 4.40450 4.52489 4.63793 4.65507 4.66068 4.67581 4.72284 4.75576 4.80779 4.88425 4.89162 4.98271 5.00849 5.01026 5.09604 5.14683 5.19152 5.23195 5.25565 5.26696 5.51384 5.82681 5.90388 6.12274 6.32390 6.38578 6.72138 7.10448 7.31056 8.86223 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.003274 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.440131 B = 8550.333996 C = 9271.532778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.005 4.005 3 C -0.139 4.139 4 C 0.172 3.828 5 N -0.406 5.406 6 O 0.070 5.930 7 C 0.200 3.800 8 C 0.177 3.823 9 H 0.106 0.894 10 C -0.143 4.143 11 N -0.547 5.547 12 C 0.076 3.924 13 C 0.069 3.931 14 N -0.528 5.528 15 C 0.161 3.839 16 C -0.548 4.548 17 H 0.033 0.967 18 C 0.009 3.991 19 N -0.949 5.949 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.242 1.242 24 C 0.059 3.941 25 C 0.070 3.930 26 N -0.495 5.495 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.014 0.986 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.028 0.972 43 H 0.265 0.735 44 H 0.016 0.984 45 H 0.084 0.916 46 H 0.112 0.888 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.053 5.795 21.409 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.102 4.102 5 N -0.116 5.116 6 O 0.015 5.985 7 C -0.020 4.020 8 C 0.067 3.933 9 H 0.123 0.877 10 C -0.201 4.201 11 N -0.274 5.274 12 C -0.053 4.053 13 C -0.060 4.060 14 N -0.252 5.252 15 C 0.034 3.966 16 C -0.587 4.587 17 H 0.051 0.949 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.165 1.165 24 C -0.070 4.070 25 C -0.057 4.057 26 N -0.230 5.230 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.102 0.898 46 H 0.130 0.870 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.532 6.434 21.458 24.345 hybrid contribution -0.901 -0.358 -1.170 1.519 sum 8.631 6.076 20.288 22.870 Atomic orbital electron populations 1.21845 0.92252 1.02280 1.03635 1.19810 0.96897 0.95978 0.89837 1.21825 1.01192 0.93067 1.03627 1.26521 0.95744 0.92618 0.95285 1.74628 1.18283 1.15212 1.03515 1.85367 1.47534 1.30123 1.35439 1.29047 0.93619 0.93791 0.85586 1.20328 0.91280 0.88236 0.93502 0.87701 1.21970 0.92569 1.03331 1.02224 1.62123 1.03293 1.31286 1.30747 1.21986 0.89584 0.97664 0.96018 1.21844 0.96411 0.92481 0.95224 1.62679 1.03742 1.27234 1.31500 1.20022 0.94085 0.94224 0.88304 1.21906 1.31382 0.98896 1.06541 0.94850 1.25956 0.96223 1.01733 0.94972 1.70096 1.39828 1.37032 1.11973 0.85659 0.79570 0.79895 0.77470 1.19506 1.21124 1.16535 1.22065 0.90111 0.98695 0.96097 1.22288 0.96850 0.90524 0.95999 1.71908 1.18438 1.14695 1.17919 0.88209 0.93183 0.93299 0.86688 0.88339 0.92580 0.93225 0.87931 0.91917 0.89947 0.92587 0.92840 0.96713 0.91487 0.94657 0.95424 0.92598 0.96602 0.89818 0.87048 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.17 71.98 0.66 -1.70 16 2 C -0.01 -0.09 3.39 -11.54 -0.04 -0.13 16 3 C -0.14 -2.06 9.18 71.98 0.66 -1.40 16 4 C 0.17 4.50 6.72 138.46 0.93 5.43 16 5 N -0.41 -12.55 12.16 -60.32 -0.73 -13.28 16 6 O 0.07 2.22 11.12 74.86 0.83 3.06 16 7 C 0.20 5.37 5.65 88.38 0.50 5.87 16 8 C 0.18 3.85 2.62 44.17 0.12 3.97 16 9 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 10 C -0.14 -2.36 8.95 71.98 0.64 -1.71 16 11 N -0.55 -15.31 4.57 -874.91 -4.00 -19.30 16 12 C 0.08 2.39 5.34 86.31 0.46 2.85 16 13 C 0.07 2.77 5.24 86.31 0.45 3.22 16 14 N -0.53 -21.21 4.92 -900.28 -4.43 -25.64 16 15 C 0.16 7.56 4.21 85.56 0.36 7.92 16 16 C -0.55 -31.22 8.21 25.60 0.21 -31.01 16 17 H 0.03 2.15 6.07 -2.91 -0.02 2.14 16 18 C 0.01 0.52 5.47 84.66 0.46 0.98 16 19 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 20 Si 0.95 43.89 27.37 68.60 1.88 45.76 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.24 -10.22 6.69 99.48 0.67 -9.56 16 24 C 0.06 2.10 5.32 86.31 0.46 2.56 16 25 C 0.07 1.78 5.32 86.31 0.46 2.24 16 26 N -0.50 -13.22 11.55 -303.20 -3.50 -16.72 16 27 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.26 6.33 -2.39 -0.02 1.25 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.05 1.76 6.72 -2.38 -0.02 1.74 16 39 H 0.01 0.71 6.62 -2.39 -0.02 0.69 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.04 1.62 7.52 -2.39 -0.02 1.60 16 42 H 0.03 1.29 7.29 -2.38 -0.02 1.27 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.02 0.69 6.78 -2.39 -0.02 0.67 16 45 H 0.08 2.76 8.12 -2.39 -0.02 2.75 16 46 H 0.11 2.18 6.14 -2.39 -0.01 2.16 16 47 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -71.36 367.08 -2.41 -73.77 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.91 Total: 12.85 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 6.34 Total: -0.92 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -12.36 Total: -134.51 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.83 Total: 3.06 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.76 kcal Total: -71.36 -2.41 -73.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609260041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.766 kcal (2) G-P(sol) polarization free energy of solvation -71.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds