Wall clock time and date at job start Fri Apr 10 2020 22:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46739 * 2 1 4 4 C 1.52995 * 109.47217 * 119.99597 * 2 1 3 5 5 N 1.46496 * 109.47266 * 187.14080 * 4 2 1 6 6 C 1.34777 * 119.99837 * 85.00725 * 5 4 2 7 7 O 1.21845 * 120.00151 * 359.97438 * 6 5 4 8 8 N 1.33833 * 120.00404 * 180.28108 * 6 5 4 9 9 C 1.32933 * 120.00493 * 179.72295 * 8 6 5 10 10 C 1.41209 * 126.37286 * 0.02562 * 9 8 6 11 11 C 1.34960 * 108.24140 * 179.97438 * 10 9 8 12 12 N 1.36456 * 108.94908 * 359.97438 * 11 10 9 13 13 C 1.46495 * 125.85536 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.46907 * 84.97539 * 13 12 11 15 15 H 1.08002 * 120.00524 * 0.02562 * 14 13 12 16 16 C 1.37888 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99761 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99827 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.47052 * 89.99940 * 18 16 14 20 20 H 1.48493 * 109.47302 * 209.99864 * 18 16 14 21 21 H 1.48499 * 109.46995 * 330.00272 * 18 16 14 22 22 N 1.37413 * 126.37965 * 179.70602 * 9 8 6 23 23 H 0.96998 * 126.36787 * 0.03830 * 22 9 8 24 24 C 1.53004 * 109.47080 * 67.14562 * 4 2 1 25 25 C 1.53000 * 109.47110 * 292.85047 * 24 4 2 26 26 C 1.53005 * 109.47200 * 52.84685 * 24 4 2 27 27 H 1.08996 * 109.47358 * 274.77344 * 1 2 3 28 28 H 1.09003 * 109.47504 * 34.78362 * 1 2 3 29 29 H 1.09005 * 109.46814 * 154.77818 * 1 2 3 30 30 H 1.08996 * 109.47377 * 239.99854 * 2 1 3 31 31 H 1.08995 * 109.46833 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46946 * 299.99869 * 3 2 1 33 33 H 1.09004 * 109.47156 * 60.00135 * 3 2 1 34 34 H 1.09000 * 109.47833 * 307.14863 * 4 2 1 35 35 H 0.96998 * 120.00717 * 265.00162 * 5 4 2 36 36 H 1.07996 * 125.88309 * 359.92675 * 10 9 8 37 37 H 1.08000 * 125.52853 * 179.97438 * 11 10 9 38 38 H 1.09008 * 109.47290 * 204.97492 * 13 12 11 39 39 H 1.09001 * 109.47131 * 324.97897 * 13 12 11 40 40 H 0.97002 * 119.99592 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.47590 * 172.85072 * 24 4 2 42 42 H 1.09007 * 109.47300 * 85.25157 * 25 24 4 43 43 H 1.08997 * 109.47704 * 205.25431 * 25 24 4 44 44 H 1.09004 * 109.47073 * 325.25847 * 25 24 4 45 45 H 1.08999 * 109.47165 * 300.00647 * 26 24 4 46 46 H 1.09002 * 109.46526 * 59.99842 * 26 24 4 47 47 H 1.08998 * 109.47175 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.4949 -0.5742 1.3382 6 6 4.0276 0.5229 1.9118 7 8 3.2991 1.3927 2.3561 8 7 5.3567 0.6598 1.9881 9 6 5.8821 1.7445 2.5490 10 6 5.1687 2.8289 3.1049 11 6 6.0615 3.7270 3.5717 12 7 7.3225 3.2610 3.3376 13 6 8.5691 3.9429 3.6941 14 6 8.9256 3.6233 5.1230 15 1 8.2876 2.9766 5.7071 16 6 10.0663 4.1565 5.6848 17 7 10.3771 3.8780 6.9319 18 14 11.1703 5.2744 4.6744 19 1 10.7304 6.6834 4.8376 20 1 12.5736 5.1368 5.1402 21 1 11.0843 4.8918 3.2421 22 7 7.2204 2.0164 2.7012 23 1 7.9576 1.4527 2.4188 24 6 1.6818 -2.2061 1.1629 25 6 0.1631 -2.3703 1.2495 26 6 2.1811 -2.7747 -0.1670 27 1 -0.3634 0.0855 1.0240 28 1 -0.3634 0.8440 -0.5863 29 1 -0.3633 -0.9298 -0.4379 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.5761 -0.2865 2.1347 35 1 4.0749 -1.2665 0.9843 36 1 4.0938 2.9238 3.1484 37 1 5.8175 4.6627 4.0526 38 1 9.3694 3.6047 3.0356 39 1 8.4387 5.0195 3.5842 40 1 11.1794 4.2534 7.3272 41 1 2.1527 -2.7421 1.9869 42 1 -0.2726 -2.2497 0.2576 43 1 -0.0739 -3.3630 1.6321 44 1 -0.2463 -1.6150 1.9204 45 1 1.7102 -2.2388 -0.9910 46 1 3.2631 -2.6577 -0.2287 47 1 1.9263 -3.8327 -0.2283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610901642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:25 Heat of formation + Delta-G solvation = 70.303920 kcal Electronic energy + Delta-G solvation = -25805.165548 eV Core-core repulsion = 22219.075937 eV Total energy + Delta-G solvation = -3586.089611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.81979 -39.75773 -37.63588 -34.28783 -33.14848 -32.89735 -32.74529 -31.04917 -30.86779 -27.90190 -27.21927 -26.34850 -25.81084 -22.84057 -21.66781 -21.24449 -21.17330 -19.66696 -19.20634 -17.41461 -17.26961 -16.21675 -15.98740 -15.62679 -15.09204 -14.88147 -14.55454 -14.43926 -14.13880 -13.87491 -13.30098 -13.20659 -13.03990 -12.87577 -12.81555 -12.62972 -12.36477 -12.28030 -12.08536 -11.88525 -11.68315 -11.44059 -11.19578 -11.02667 -10.84779 -10.73879 -10.66872 -10.33432 -10.11835 -10.02990 -9.64770 -9.61863 -9.04045 -9.02930 -8.45199 -8.26660 -6.81869 -6.50642 -4.58873 1.76551 2.03775 2.96936 3.01516 3.07811 3.16795 3.68300 3.98244 4.40528 4.57597 4.63553 4.78029 4.82674 4.96984 5.08733 5.22871 5.23759 5.27137 5.45663 5.51268 5.60587 5.64005 5.70459 5.79936 5.85160 5.91628 5.93927 5.98475 6.03650 6.06592 6.10065 6.15905 6.19797 6.24557 6.35294 6.40764 6.53603 6.71025 6.76302 6.95263 7.17898 7.38018 7.58753 7.77714 8.03524 8.34942 8.50988 8.53825 9.01927 9.68177 10.60959 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.002532 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.594016 B =11057.550632 C =11287.596461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.173 3.827 5 N -0.726 5.726 6 C 0.687 3.313 7 O -0.626 6.626 8 N -0.713 5.713 9 C 0.490 3.510 10 C -0.329 4.329 11 C 0.162 3.838 12 N -0.347 5.347 13 C 0.230 3.770 14 C -0.564 4.564 15 H 0.085 0.915 16 C 0.083 3.917 17 N -0.877 5.877 18 Si 0.875 3.125 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.265 1.265 22 N -0.472 5.472 23 H 0.444 0.556 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.150 4.150 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.393 0.607 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.272 0.728 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.719 -6.682 -13.207 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.193 4.193 4 C 0.067 3.933 5 N -0.379 5.379 6 C 0.387 3.613 7 O -0.508 6.508 8 N -0.477 5.477 9 C 0.236 3.764 10 C -0.362 4.362 11 C 0.019 3.981 12 N -0.134 5.134 13 C 0.112 3.888 14 C -0.602 4.602 15 H 0.103 0.897 16 C -0.124 4.124 17 N -0.512 5.512 18 Si 0.700 3.300 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.190 1.190 22 N -0.196 5.196 23 H 0.291 0.709 24 C -0.123 4.123 25 C -0.210 4.210 26 C -0.207 4.207 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.227 0.773 36 H 0.202 0.798 37 H 0.204 0.796 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.309 -6.606 -13.009 19.748 hybrid contribution 1.107 0.410 -0.270 1.211 sum -12.202 -6.196 -13.279 19.069 Atomic orbital electron populations 1.22246 0.95438 1.01318 1.01935 1.21599 0.95362 0.97304 0.98456 1.21876 1.01392 0.95066 1.00933 1.20898 0.80590 0.93770 0.98077 1.44802 1.05956 1.22651 1.64482 1.16520 0.85084 0.81627 0.78072 1.90719 1.64638 1.41810 1.53671 1.68057 1.13379 1.25106 1.41172 1.18697 0.81974 0.89753 0.86019 1.22428 1.02178 0.96654 1.14898 1.22797 0.82196 0.99192 0.93955 1.47385 1.08178 1.07378 1.50415 1.20287 0.78269 0.92164 0.98093 1.21277 1.10711 1.33536 0.94653 0.89675 1.24838 0.96896 0.95721 0.94901 1.69862 1.25771 1.42996 1.12606 0.86889 0.80889 0.81600 0.80604 1.19357 1.20323 1.18950 1.44359 1.07134 1.12531 1.55531 0.70920 1.21367 0.96782 0.95503 0.98637 1.22242 0.94865 1.01403 1.02511 1.21965 1.01222 1.00444 0.97093 0.92334 0.93236 0.92015 0.91324 0.92779 0.94626 0.91346 0.89910 0.77283 0.79804 0.79623 0.93465 0.92282 0.91741 0.90788 0.91332 0.93138 0.92061 0.91992 0.92620 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.89 37.16 0.29 -1.15 16 2 C -0.11 -1.25 2.35 -90.62 -0.21 -1.46 16 3 C -0.14 -1.94 7.54 37.16 0.28 -1.66 16 4 C 0.17 2.17 1.68 -67.93 -0.11 2.05 16 5 N -0.73 -10.84 4.78 -58.87 -0.28 -11.12 16 6 C 0.69 12.94 6.60 -87.76 -0.58 12.37 16 7 O -0.63 -12.78 10.39 5.06 0.05 -12.73 16 8 N -0.71 -13.87 10.59 -15.79 -0.17 -14.03 16 9 C 0.49 9.41 8.07 -155.30 -1.25 8.16 16 10 C -0.33 -6.07 9.52 -39.62 -0.38 -6.44 16 11 C 0.16 2.71 11.45 -16.66 -0.19 2.52 16 12 N -0.35 -6.32 3.63 -62.24 -0.23 -6.55 16 13 C 0.23 4.46 5.26 -5.20 -0.03 4.43 16 14 C -0.56 -13.76 9.94 -34.44 -0.34 -14.11 16 15 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.88 -24.12 13.96 55.43 0.77 -23.34 16 18 Si 0.87 18.00 27.47 -169.99 -4.67 13.33 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.26 -5.07 6.54 56.52 0.37 -4.70 16 22 N -0.47 -8.35 7.38 31.33 0.23 -8.12 16 23 H 0.44 6.89 8.96 -182.55 -1.64 5.25 16 24 C -0.10 -1.00 2.83 -90.62 -0.26 -1.26 16 25 C -0.15 -1.23 7.89 37.16 0.29 -0.94 16 26 C -0.15 -1.27 8.41 37.16 0.31 -0.95 16 27 H 0.06 0.57 6.47 -51.93 -0.34 0.23 16 28 H 0.05 0.46 7.89 -51.93 -0.41 0.05 16 29 H 0.06 0.48 5.41 -51.93 -0.28 0.20 16 30 H 0.07 0.76 5.90 -51.93 -0.31 0.45 16 31 H 0.05 0.91 5.99 -51.93 -0.31 0.60 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 1.11 7.03 -51.93 -0.37 0.74 16 34 H 0.08 1.23 7.20 -51.93 -0.37 0.85 16 35 H 0.39 5.36 7.42 -40.82 -0.30 5.06 16 36 H 0.19 3.56 5.77 -52.49 -0.30 3.26 16 37 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.05 0.88 7.20 -51.92 -0.37 0.51 16 39 H 0.06 1.05 7.57 -51.93 -0.39 0.65 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.49 5.16 -51.92 -0.27 0.23 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.52 6.47 -51.93 -0.34 0.18 16 45 H 0.06 0.51 6.14 -51.93 -0.32 0.19 16 46 H 0.05 0.49 6.90 -51.93 -0.36 0.13 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -29.74 358.32 -9.53 -39.28 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -8.38 Total: 14.35 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.27 Total: 3.53 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.33 Total: -63.16 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.05 Total: -12.73 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -4.67 Total: 13.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.74 -9.53 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610901642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.582 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds