Wall clock time and date at job start Fri Apr 10 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00413 * 2 1 4 4 H 1.48504 * 109.47192 * 269.99838 * 3 2 1 5 5 H 1.48498 * 109.47229 * 29.99679 * 3 2 1 6 6 H 1.48500 * 109.47584 * 149.99999 * 3 2 1 7 7 C 1.37880 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99647 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00169 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47107 * 179.97438 * 9 7 2 11 11 C 1.34781 * 120.00032 * 270.00139 * 10 9 7 12 12 O 1.21582 * 119.99975 * 5.27910 * 11 10 9 13 13 N 1.34779 * 119.99570 * 185.27615 * 11 10 9 14 14 C 1.46503 * 119.99550 * 185.16048 * 13 11 10 15 15 C 1.54238 * 108.90086 * 277.88873 * 14 13 11 16 16 C 1.50470 * 108.52752 * 159.26314 * 15 14 13 17 17 C 1.54074 * 112.49711 * 94.15280 * 16 15 14 18 18 C 1.54066 * 112.81492 * 318.28245 * 17 16 15 19 19 C 1.50478 * 112.49885 * 318.28733 * 18 17 16 20 20 C 1.45541 * 108.89154 * 155.00172 * 14 13 11 21 21 C 1.46508 * 119.99871 * 90.00241 * 10 9 7 22 22 C 1.54266 * 110.02985 * 297.88043 * 21 10 9 23 23 C 1.54958 * 104.16116 * 95.75582 * 22 21 10 24 24 C 1.54889 * 102.77852 * 37.88496 * 23 22 21 25 25 C 1.53871 * 110.02892 * 55.09821 * 21 10 9 26 26 H 0.97003 * 119.99735 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46862 * 59.99908 * 9 7 2 28 28 H 1.08992 * 109.46875 * 300.00107 * 9 7 2 29 29 H 0.97001 * 120.00253 * 5.17213 * 13 11 10 30 30 H 1.09001 * 108.87090 * 36.40158 * 14 13 11 31 31 H 1.09004 * 109.62372 * 278.97890 * 15 14 13 32 32 H 1.09002 * 109.62760 * 39.54703 * 15 14 13 33 33 H 1.08996 * 108.87665 * 333.37589 * 16 15 14 34 34 H 1.08997 * 108.88178 * 214.92858 * 16 15 14 35 35 H 1.09000 * 108.81071 * 197.42553 * 17 16 15 36 36 H 1.08991 * 108.73072 * 79.08451 * 17 16 15 37 37 H 1.08998 * 108.88060 * 197.51152 * 18 17 16 38 38 H 1.08999 * 108.87666 * 79.06331 * 18 17 16 39 39 H 1.09001 * 109.62703 * 334.44201 * 19 18 17 40 40 H 1.08993 * 109.63165 * 213.86621 * 19 18 17 41 41 H 1.08998 * 108.89948 * 303.44652 * 20 14 13 42 42 H 1.09001 * 108.89617 * 62.03401 * 20 14 13 43 43 H 1.09002 * 110.01537 * 176.48967 * 21 10 9 44 44 H 1.09005 * 110.48567 * 214.40100 * 22 21 10 45 45 H 1.09003 * 110.48900 * 337.04037 * 22 21 10 46 46 H 1.09002 * 110.72017 * 279.57528 * 23 22 21 47 47 H 1.09001 * 110.92754 * 156.29517 * 23 22 21 48 48 H 1.09000 * 110.49041 * 203.41066 * 24 23 22 49 49 H 1.08999 * 110.59984 * 80.81521 * 24 23 22 50 50 H 1.08996 * 110.03388 * 359.94858 * 25 21 10 51 51 H 1.08996 * 110.02987 * 121.33655 * 25 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 0.0013 11 6 4.2248 -3.2095 1.1692 12 8 3.9325 -2.6711 2.2194 13 7 4.7737 -4.4404 1.1727 14 6 4.9144 -5.1760 2.4318 15 6 6.1871 -4.6899 3.1549 16 6 6.0698 -5.0367 4.6144 17 6 6.7358 -6.3835 4.9557 18 6 6.4582 -7.4715 3.9008 19 6 5.0314 -7.4592 3.4227 20 6 4.9509 -6.6020 2.1430 21 6 4.2434 -3.2674 -1.2668 22 6 2.9277 -3.3909 -2.0627 23 6 2.9554 -2.1814 -3.0310 24 6 4.4486 -2.0995 -3.4342 25 6 5.2101 -2.4463 -2.1380 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6798 0.8894 28 1 3.8745 -0.6810 -0.8905 29 1 5.0758 -4.8392 0.3416 30 1 4.0501 -4.9654 3.0616 31 1 7.0609 -5.1841 2.7301 32 1 6.2828 -3.6100 3.0416 33 1 5.0142 -5.0877 4.8810 34 1 6.5426 -4.2504 5.2029 35 1 6.3619 -6.7259 5.9206 36 1 7.8126 -6.2326 5.0300 37 1 6.6762 -8.4473 4.3348 38 1 7.1174 -7.3119 3.0476 39 1 4.3909 -7.0289 4.1925 40 1 4.7103 -8.4772 3.2023 41 1 4.0505 -6.8738 1.5921 42 1 5.8214 -6.8143 1.5223 43 1 4.6599 -4.2569 -1.0779 44 1 2.9064 -4.3265 -2.6217 45 1 2.0696 -3.3256 -1.3937 46 1 2.6428 -1.2709 -2.5197 47 1 2.3292 -2.3670 -3.9037 48 1 4.6995 -1.0919 -3.7659 49 1 4.6753 -2.8249 -4.2155 50 1 5.4971 -1.5325 -1.6178 51 1 6.0959 -3.0369 -2.3713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191257888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:37 Heat of formation + Delta-G solvation = -42.680254 kcal Electronic energy + Delta-G solvation = -27556.637632 eV Core-core repulsion = 24069.189002 eV Total energy + Delta-G solvation = -3487.448629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.14849 -38.79605 -37.21389 -34.35718 -33.50969 -32.37900 -32.16290 -30.43390 -28.37062 -28.17288 -26.54352 -24.88482 -24.21201 -22.21365 -20.71067 -20.61889 -20.12261 -19.31795 -18.59464 -17.59478 -16.79909 -16.28359 -15.55855 -14.97151 -14.90197 -14.79988 -14.32395 -14.27083 -13.73354 -13.68212 -13.36684 -13.03655 -12.85280 -12.77886 -12.30690 -12.24824 -12.17642 -11.70216 -11.44074 -11.27991 -11.19745 -10.91398 -10.85112 -10.70262 -10.65027 -10.57223 -10.50272 -10.47615 -10.38024 -10.29241 -10.26707 -9.99773 -9.84409 -9.31838 -9.13514 -8.57212 -8.49794 -7.50624 -5.99684 -3.95196 3.29519 3.33359 3.42650 3.44652 4.00689 4.42807 4.46772 4.57581 4.75267 4.78659 4.98579 5.08859 5.11343 5.13601 5.20502 5.29259 5.30445 5.33479 5.39763 5.55964 5.64660 5.69100 5.80836 5.90579 5.94676 5.96021 5.97954 6.00119 6.06097 6.07640 6.13564 6.14183 6.19969 6.25408 6.29261 6.33636 6.40884 6.49832 6.51835 6.66075 6.69193 6.95349 7.00200 7.05122 7.17879 7.46782 7.67286 7.80065 8.59195 8.76050 9.05622 9.42744 9.62777 11.13660 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.004233 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.860129 B = 6613.506404 C = 7523.320641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.866 3.134 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.076 0.924 9 C 0.232 3.768 10 N -0.603 5.603 11 C 0.702 3.298 12 O -0.582 6.582 13 N -0.757 5.757 14 C 0.168 3.832 15 C -0.123 4.123 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.127 4.127 21 C 0.144 3.856 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.135 4.135 26 H 0.262 0.738 27 H 0.035 0.965 28 H 0.026 0.974 29 H 0.387 0.613 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.145 -14.116 -0.055 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.693 3.307 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.094 0.906 9 C 0.111 3.889 10 N -0.338 5.338 11 C 0.404 3.596 12 O -0.459 6.459 13 N -0.416 5.416 14 C 0.063 3.937 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.165 4.165 21 C 0.038 3.962 22 C -0.169 4.169 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.174 4.174 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.222 0.778 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.743 -13.555 0.727 19.317 hybrid contribution 0.480 0.739 -0.503 1.015 sum 14.223 -12.816 0.224 19.147 Atomic orbital electron populations 1.69893 1.06086 1.26660 1.51259 1.24819 0.94658 0.98586 0.94955 0.86992 0.80778 0.84470 0.78412 1.20212 1.21145 1.18949 1.21346 0.89220 0.94482 1.49877 0.90575 1.19503 0.95512 0.77070 0.96819 1.47269 1.68143 1.15873 1.02537 1.15891 0.78485 0.80680 0.84572 1.90885 1.58176 1.66362 1.30461 1.45608 1.68170 1.18054 1.09765 1.19617 0.98476 0.90118 0.85505 1.21709 0.97542 1.01874 0.95042 1.21247 1.01413 0.96231 0.96545 1.21934 1.00215 0.94864 0.98393 1.21354 0.96917 0.98270 0.99068 1.21225 0.97242 0.99381 0.97078 1.20764 1.02535 0.94691 0.98495 1.21527 0.95483 0.94137 0.85015 1.22739 0.98619 0.97191 0.98347 1.22558 0.94510 1.00695 0.98276 1.22337 0.96626 1.00576 0.96461 1.22568 0.97650 1.00739 0.96440 0.92800 0.94752 0.95576 0.77752 0.90148 0.92204 0.91093 0.91790 0.92312 0.92476 0.92589 0.92557 0.92103 0.91183 0.91672 0.91507 0.91888 0.91257 0.92709 0.89019 0.88883 0.92654 0.92213 0.92426 0.90839 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.51 -14.24 7.75 -34.44 -0.27 -14.51 16 8 H 0.08 2.34 6.73 -52.49 -0.35 1.99 16 9 C 0.23 5.62 3.10 -5.19 -0.02 5.60 16 10 N -0.60 -12.41 2.34 -171.89 -0.40 -12.81 16 11 C 0.70 14.74 8.00 -86.91 -0.70 14.04 16 12 O -0.58 -14.86 15.44 5.29 0.08 -14.77 16 13 N -0.76 -11.83 4.91 -61.52 -0.30 -12.13 16 14 C 0.17 2.31 1.91 -70.80 -0.14 2.18 16 15 C -0.12 -1.59 5.14 -27.35 -0.14 -1.73 16 16 C -0.12 -1.34 5.31 -27.43 -0.15 -1.48 16 17 C -0.12 -1.06 5.85 -25.61 -0.15 -1.21 16 18 C -0.12 -0.99 5.31 -27.43 -0.15 -1.14 16 19 C -0.11 -1.00 5.61 -27.34 -0.15 -1.16 16 20 C -0.13 -1.32 4.60 -29.60 -0.14 -1.45 16 21 C 0.14 2.32 3.33 -66.81 -0.22 2.10 16 22 C -0.13 -2.22 5.88 -25.03 -0.15 -2.37 16 23 C -0.12 -2.09 6.36 -24.70 -0.16 -2.25 16 24 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 25 C -0.14 -1.96 5.97 -25.61 -0.15 -2.11 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.03 0.92 6.55 -51.93 -0.34 0.58 16 28 H 0.03 0.60 5.06 -51.93 -0.26 0.34 16 29 H 0.39 5.01 6.00 -40.82 -0.25 4.76 16 30 H 0.08 1.34 6.99 -51.93 -0.36 0.98 16 31 H 0.06 0.68 6.98 -51.93 -0.36 0.32 16 32 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 33 H 0.06 0.79 6.63 -51.93 -0.34 0.45 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.51 6.63 -51.93 -0.34 0.16 16 39 H 0.07 0.69 6.98 -51.93 -0.36 0.33 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.58 7.46 -51.93 -0.39 0.19 16 43 H 0.07 0.93 5.54 -51.93 -0.29 0.64 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.93 6.02 -51.93 -0.31 1.62 16 46 H 0.09 1.93 5.91 -51.93 -0.31 1.63 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 1.19 6.67 -51.93 -0.35 0.84 16 51 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -32.48 367.01 -10.76 -43.24 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.83 Total: 6.22 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -2.93 Total: -5.42 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.07 Total: -51.70 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.48 -10.76 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191257888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.557 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds