Wall clock time and date at job start Fri Apr 10 2020 22:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00413 * 2 1 4 4 H 1.48504 * 109.47192 * 269.99838 * 3 2 1 5 5 H 1.48498 * 109.47229 * 29.99679 * 3 2 1 6 6 H 1.48500 * 109.47584 * 149.99999 * 3 2 1 7 7 C 1.37880 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99647 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00169 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47107 * 179.97438 * 9 7 2 11 11 C 1.34781 * 120.00032 * 270.00139 * 10 9 7 12 12 O 1.21582 * 119.99975 * 5.27910 * 11 10 9 13 13 N 1.34779 * 119.99570 * 185.27615 * 11 10 9 14 14 C 1.46503 * 119.99550 * 185.16048 * 13 11 10 15 15 C 1.54238 * 108.90086 * 277.88873 * 14 13 11 16 16 C 1.50470 * 108.52752 * 159.26314 * 15 14 13 17 17 C 1.54074 * 112.49711 * 94.15280 * 16 15 14 18 18 C 1.54066 * 112.81492 * 318.28245 * 17 16 15 19 19 C 1.50478 * 112.49885 * 318.28733 * 18 17 16 20 20 C 1.45541 * 108.89154 * 155.00172 * 14 13 11 21 21 C 1.46508 * 119.99871 * 90.00241 * 10 9 7 22 22 C 1.54266 * 110.02985 * 297.88043 * 21 10 9 23 23 C 1.54958 * 104.16116 * 95.75582 * 22 21 10 24 24 C 1.54889 * 102.77852 * 37.88496 * 23 22 21 25 25 C 1.53871 * 110.02892 * 55.09821 * 21 10 9 26 26 H 0.97003 * 119.99735 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46862 * 59.99908 * 9 7 2 28 28 H 1.08992 * 109.46875 * 300.00107 * 9 7 2 29 29 H 0.97001 * 120.00253 * 5.17213 * 13 11 10 30 30 H 1.09001 * 108.87090 * 36.40158 * 14 13 11 31 31 H 1.09004 * 109.62372 * 278.97890 * 15 14 13 32 32 H 1.09002 * 109.62760 * 39.54703 * 15 14 13 33 33 H 1.08996 * 108.87665 * 333.37589 * 16 15 14 34 34 H 1.08997 * 108.88178 * 214.92858 * 16 15 14 35 35 H 1.09000 * 108.81071 * 197.42553 * 17 16 15 36 36 H 1.08991 * 108.73072 * 79.08451 * 17 16 15 37 37 H 1.08998 * 108.88060 * 197.51152 * 18 17 16 38 38 H 1.08999 * 108.87666 * 79.06331 * 18 17 16 39 39 H 1.09001 * 109.62703 * 334.44201 * 19 18 17 40 40 H 1.08993 * 109.63165 * 213.86621 * 19 18 17 41 41 H 1.08998 * 108.89948 * 303.44652 * 20 14 13 42 42 H 1.09001 * 108.89617 * 62.03401 * 20 14 13 43 43 H 1.09002 * 110.01537 * 176.48967 * 21 10 9 44 44 H 1.09005 * 110.48567 * 214.40100 * 22 21 10 45 45 H 1.09003 * 110.48900 * 337.04037 * 22 21 10 46 46 H 1.09002 * 110.72017 * 279.57528 * 23 22 21 47 47 H 1.09001 * 110.92754 * 156.29517 * 23 22 21 48 48 H 1.09000 * 110.49041 * 203.41066 * 24 23 22 49 49 H 1.08999 * 110.59984 * 80.81521 * 24 23 22 50 50 H 1.08996 * 110.03388 * 359.94858 * 25 21 10 51 51 H 1.08996 * 110.02987 * 121.33655 * 25 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 0.0013 11 6 4.2248 -3.2095 1.1692 12 8 3.9325 -2.6711 2.2194 13 7 4.7737 -4.4404 1.1727 14 6 4.9144 -5.1760 2.4318 15 6 6.1871 -4.6899 3.1549 16 6 6.0698 -5.0367 4.6144 17 6 6.7358 -6.3835 4.9557 18 6 6.4582 -7.4715 3.9008 19 6 5.0314 -7.4592 3.4227 20 6 4.9509 -6.6020 2.1430 21 6 4.2434 -3.2674 -1.2668 22 6 2.9277 -3.3909 -2.0627 23 6 2.9554 -2.1814 -3.0310 24 6 4.4486 -2.0995 -3.4342 25 6 5.2101 -2.4463 -2.1380 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6798 0.8894 28 1 3.8745 -0.6810 -0.8905 29 1 5.0758 -4.8392 0.3416 30 1 4.0501 -4.9654 3.0616 31 1 7.0609 -5.1841 2.7301 32 1 6.2828 -3.6100 3.0416 33 1 5.0142 -5.0877 4.8810 34 1 6.5426 -4.2504 5.2029 35 1 6.3619 -6.7259 5.9206 36 1 7.8126 -6.2326 5.0300 37 1 6.6762 -8.4473 4.3348 38 1 7.1174 -7.3119 3.0476 39 1 4.3909 -7.0289 4.1925 40 1 4.7103 -8.4772 3.2023 41 1 4.0505 -6.8738 1.5921 42 1 5.8214 -6.8143 1.5223 43 1 4.6599 -4.2569 -1.0779 44 1 2.9064 -4.3265 -2.6217 45 1 2.0696 -3.3256 -1.3937 46 1 2.6428 -1.2709 -2.5197 47 1 2.3292 -2.3670 -3.9037 48 1 4.6995 -1.0919 -3.7659 49 1 4.6753 -2.8249 -4.2155 50 1 5.4971 -1.5325 -1.6178 51 1 6.0959 -3.0369 -2.3713 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191257888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:35 Heat of formation + Delta-G solvation = -62.533863 kcal Electronic energy + Delta-G solvation = -27557.498549 eV Core-core repulsion = 24069.189002 eV Total energy + Delta-G solvation = -3488.309546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.59257 -39.94101 -38.61621 -35.69305 -35.25683 -34.35580 -33.04920 -31.75929 -30.02829 -29.47090 -28.07092 -25.81816 -25.32792 -24.00693 -22.14624 -21.76466 -21.37423 -20.23692 -19.97402 -19.17099 -18.88982 -17.59693 -16.72262 -16.48168 -16.20486 -16.02354 -15.84580 -15.55479 -15.22420 -14.98343 -14.63623 -14.39691 -14.14612 -13.99613 -13.88500 -13.58079 -13.24371 -13.03766 -12.98611 -12.85586 -12.56101 -12.33246 -12.14435 -12.02736 -11.93821 -11.88431 -11.86043 -11.68002 -11.51934 -11.39108 -11.31792 -11.20615 -11.20119 -11.11450 -10.90892 -10.74491 -10.04971 -9.18979 -8.25988 -6.25826 1.29468 1.34251 1.44304 1.86506 2.33806 2.35324 3.02491 3.11255 3.67231 3.75386 3.83418 3.88455 4.03406 4.05895 4.22869 4.26055 4.35405 4.42746 4.49191 4.52431 4.60956 4.65763 4.69895 4.72339 4.78350 4.84515 4.89158 4.94489 4.96836 5.05160 5.09754 5.10558 5.16463 5.21780 5.23830 5.29970 5.34801 5.39090 5.40843 5.42779 5.48681 5.53775 5.55311 5.60954 5.72298 5.73211 5.75952 6.17508 6.39073 6.73801 7.24259 7.33162 7.80524 8.90924 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.004233 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.860129 B = 6613.506404 C = 7523.320641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.013 3.987 3 Si 0.931 3.069 4 H -0.252 1.252 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.032 0.968 9 C 0.248 3.752 10 N -0.608 5.608 11 C 0.694 3.306 12 O -0.638 6.638 13 N -0.736 5.736 14 C 0.170 3.830 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.123 4.123 21 C 0.136 3.864 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.111 4.111 25 C -0.132 4.132 26 H 0.264 0.736 27 H 0.006 0.994 28 H 0.046 0.954 29 H 0.404 0.596 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.046 0.954 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.053 0.947 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.683 -16.207 -1.880 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.184 4.184 3 Si 0.755 3.245 4 H -0.176 1.176 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.125 3.875 10 N -0.342 5.342 11 C 0.396 3.604 12 O -0.520 6.520 13 N -0.395 5.395 14 C 0.066 3.934 15 C -0.153 4.153 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.161 4.161 21 C 0.033 3.967 22 C -0.167 4.167 23 C -0.166 4.166 24 C -0.149 4.149 25 C -0.170 4.170 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.243 0.757 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.109 0.891 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.072 0.928 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.322 -15.710 -1.145 23.413 hybrid contribution -0.710 1.291 0.087 1.476 sum 16.612 -14.418 -1.058 22.022 Atomic orbital electron populations 1.70046 1.07936 1.27712 1.53184 1.25674 0.95460 1.02564 0.94744 0.85954 0.79299 0.79564 0.79695 1.17579 1.21088 1.18478 1.21452 0.91178 0.92758 1.48709 0.95007 1.19073 0.92808 0.79568 0.96045 1.47239 1.67753 1.14882 1.04348 1.16193 0.78493 0.81892 0.83847 1.90840 1.60495 1.68065 1.32555 1.45433 1.66581 1.16042 1.11431 1.19770 0.97416 0.92151 0.84107 1.21611 0.97932 0.99642 0.96123 1.21233 1.00616 0.98090 0.95502 1.21902 1.00538 0.93348 0.99118 1.21357 0.96230 0.98718 0.99107 1.21236 0.97820 0.99833 0.95822 1.20739 1.03592 0.91958 0.99782 1.21925 0.95792 0.95824 0.83162 1.22691 0.97067 0.99063 0.97917 1.22508 0.97444 0.98478 0.98198 1.22310 0.93481 1.01992 0.97097 1.22573 0.98491 1.00165 0.95750 0.92703 0.97608 0.93653 0.75672 0.94080 0.89552 0.94811 0.93668 0.92861 0.91889 0.91391 0.90697 0.91242 0.92742 0.89742 0.91744 0.89299 0.87718 0.89054 0.94226 0.93530 0.91613 0.91846 0.88974 0.92773 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 2 C 0.01 0.76 5.47 84.66 0.46 1.22 16 3 Si 0.93 45.77 27.47 68.60 1.88 47.66 16 4 H -0.25 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 7 C -0.50 -29.69 7.75 25.60 0.20 -29.49 16 8 H 0.03 2.12 6.73 -2.91 -0.02 2.10 16 9 C 0.25 12.44 3.10 85.64 0.27 12.71 16 10 N -0.61 -25.50 2.34 -816.00 -1.91 -27.41 16 11 C 0.69 30.12 8.00 179.05 1.43 31.56 16 12 O -0.64 -34.71 15.44 -3.97 -0.06 -34.77 16 13 N -0.74 -22.64 4.91 -466.82 -2.29 -24.94 16 14 C 0.17 4.67 1.91 43.13 0.08 4.75 16 15 C -0.11 -2.93 5.14 30.20 0.16 -2.77 16 16 C -0.12 -2.69 5.31 30.14 0.16 -2.53 16 17 C -0.11 -1.78 5.85 31.32 0.18 -1.60 16 18 C -0.12 -1.55 5.31 30.14 0.16 -1.39 16 19 C -0.11 -1.71 5.61 30.20 0.17 -1.54 16 20 C -0.12 -2.29 4.60 28.74 0.13 -2.15 16 21 C 0.14 4.16 3.33 45.71 0.15 4.32 16 22 C -0.13 -4.31 5.88 31.69 0.19 -4.12 16 23 C -0.13 -4.28 6.36 31.91 0.20 -4.08 16 24 C -0.11 -2.74 6.83 31.67 0.22 -2.52 16 25 C -0.13 -3.35 5.97 31.32 0.19 -3.16 16 26 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 27 H 0.01 0.33 6.55 -2.39 -0.02 0.31 16 28 H 0.05 2.11 5.06 -2.39 -0.01 2.10 16 29 H 0.40 9.40 6.00 -92.71 -0.56 8.85 16 30 H 0.04 1.46 6.99 -2.39 -0.02 1.44 16 31 H 0.09 1.74 6.98 -2.39 -0.02 1.72 16 32 H 0.03 1.11 7.68 -2.39 -0.02 1.09 16 33 H 0.04 1.19 6.63 -2.39 -0.02 1.18 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.84 6.63 -2.39 -0.02 0.82 16 39 H 0.05 1.04 6.98 -2.39 -0.02 1.02 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.25 7.46 -2.39 -0.02 1.23 16 43 H 0.11 2.42 5.54 -2.39 -0.01 2.40 16 44 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.04 1.75 6.02 -2.39 -0.01 1.73 16 46 H 0.05 1.98 5.91 -2.39 -0.01 1.96 16 47 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.05 1.62 6.67 -2.39 -0.02 1.60 16 51 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -79.00 367.01 2.57 -76.43 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.30 Total: 24.44 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 4.35 Total: -0.80 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -3.90 Total: -112.95 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.06 Total: -34.77 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.66 kcal Total: -79.00 2.57 -76.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191257888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.893 kcal (2) G-P(sol) polarization free energy of solvation -78.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds