Wall clock time and date at job start Fri Apr 10 2020 22:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99995 * 2 1 4 4 H 1.48494 * 109.47210 * 270.00637 * 3 2 1 5 5 H 1.48504 * 109.46819 * 30.00626 * 3 2 1 6 6 H 1.48493 * 109.47312 * 150.00216 * 3 2 1 7 7 C 1.37874 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00118 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00154 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.46853 * 179.97438 * 9 7 2 11 11 C 1.46851 * 110.99986 * 294.19642 * 10 9 7 12 12 C 1.53037 * 109.55216 * 174.16538 * 11 10 9 13 13 C 1.53141 * 109.26440 * 59.19109 * 12 11 10 14 14 C 1.53060 * 109.14004 * 302.40073 * 13 12 11 15 15 C 1.46859 * 110.99457 * 170.00287 * 10 9 7 16 16 C 1.53020 * 109.51989 * 177.69309 * 14 13 12 17 17 N 1.47027 * 109.27161 * 176.68508 * 16 14 13 18 18 C 1.46902 * 110.99831 * 177.71430 * 17 16 14 19 19 C 1.54270 * 110.03057 * 304.86767 * 18 17 16 20 20 C 1.54893 * 104.19314 * 217.10953 * 19 18 17 21 21 C 1.54889 * 102.75085 * 37.94549 * 20 19 18 22 22 C 1.53872 * 110.02767 * 187.70635 * 18 17 16 23 23 C 1.47012 * 110.74843 * 301.48563 * 17 16 14 24 24 C 1.53106 * 109.26987 * 58.64485 * 23 17 16 25 25 O 1.42957 * 109.46852 * 297.61755 * 14 13 12 26 26 H 0.96998 * 120.00343 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47146 * 59.99880 * 9 7 2 28 28 H 1.08998 * 109.46906 * 299.99627 * 9 7 2 29 29 H 1.08999 * 109.46052 * 294.19564 * 11 10 9 30 30 H 1.09005 * 109.45538 * 54.14428 * 11 10 9 31 31 H 1.09000 * 109.50550 * 299.25279 * 12 11 10 32 32 H 1.08997 * 109.50486 * 179.12019 * 12 11 10 33 33 H 1.09001 * 109.52456 * 182.50640 * 13 12 11 34 34 H 1.08995 * 109.52786 * 62.30064 * 13 12 11 35 35 H 1.09002 * 109.46841 * 305.77099 * 15 10 9 36 36 H 1.09003 * 109.47208 * 65.75269 * 15 10 9 37 37 H 1.09004 * 109.50472 * 296.62614 * 16 14 13 38 38 H 1.09009 * 109.50564 * 56.74240 * 16 14 13 39 39 H 1.09000 * 110.01912 * 66.31298 * 18 17 16 40 40 H 1.08996 * 110.49064 * 335.78767 * 19 18 17 41 41 H 1.08997 * 110.48076 * 98.43379 * 19 18 17 42 42 H 1.08999 * 110.75322 * 279.62744 * 20 19 18 43 43 H 1.09004 * 110.75460 * 156.26592 * 20 19 18 44 44 H 1.08997 * 110.48404 * 203.37680 * 21 20 19 45 45 H 1.08996 * 110.48571 * 80.73425 * 21 20 19 46 46 H 1.09008 * 110.03451 * 238.56662 * 22 18 17 47 47 H 1.08998 * 110.03949 * 359.97438 * 22 18 17 48 48 H 1.08996 * 109.50809 * 298.70355 * 23 17 16 49 49 H 1.09001 * 109.53637 * 178.60089 * 23 17 16 50 50 H 1.08998 * 109.50676 * 183.16932 * 24 23 17 51 51 H 1.08995 * 109.50676 * 63.03240 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 3.6473 -3.2622 1.2498 12 6 4.0427 -4.7377 1.1571 13 6 5.5497 -4.8421 0.9058 14 6 5.8988 -4.0811 -0.3756 15 6 5.4495 -2.6251 -0.2396 16 6 7.4110 -4.1312 -0.6042 17 7 7.7316 -3.4677 -1.8764 18 6 9.1821 -3.4463 -2.1080 19 6 9.8988 -2.7900 -0.9099 20 6 11.0554 -1.9854 -1.5535 21 6 10.4089 -1.4335 -2.8482 22 6 9.5064 -2.5839 -3.3403 23 6 7.0294 -4.1161 -2.9934 24 6 5.5203 -4.0631 -2.7404 25 8 5.2307 -4.6855 -1.4856 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8745 -0.6800 -0.8912 29 1 4.1768 -2.7959 2.0807 30 1 2.5726 -3.1839 1.4148 31 1 3.5032 -5.2081 0.3350 32 1 3.7940 -5.2405 2.0916 33 1 5.8288 -5.8899 0.7947 34 1 6.0903 -4.4072 1.7464 35 1 5.6839 -2.0855 -1.1572 36 1 5.9707 -2.1609 0.5978 37 1 7.9196 -3.6184 0.2121 38 1 7.7390 -5.1701 -0.6426 39 1 9.5516 -4.4612 -2.2548 40 1 9.2202 -2.1232 -0.3779 41 1 10.2923 -3.5517 -0.2369 42 1 11.8957 -2.6384 -1.7892 43 1 11.3693 -1.1708 -0.9007 44 1 11.1746 -1.2054 -3.5896 45 1 9.8126 -0.5478 -2.6293 46 1 10.0340 -3.1800 -4.0850 47 1 8.5875 -2.1816 -3.7669 48 1 7.3492 -5.1552 -3.0705 49 1 7.2612 -3.5941 -3.9219 50 1 4.9987 -4.5920 -3.5381 51 1 5.1915 -3.0242 -2.7159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939560.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:18 Heat of formation + Delta-G solvation = -38.455200 kcal Electronic energy + Delta-G solvation = -27856.661769 eV Core-core repulsion = 24369.396352 eV Total energy + Delta-G solvation = -3487.265417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.45457 -38.51797 -36.68726 -34.44392 -33.52649 -32.02630 -30.98192 -29.21743 -28.77160 -27.76770 -26.72688 -24.66685 -23.59162 -22.96777 -21.20974 -20.68049 -20.02932 -19.56674 -18.88709 -16.86446 -16.73431 -16.04930 -15.70391 -15.32833 -14.81898 -14.66364 -14.49420 -14.26054 -13.93863 -13.87310 -13.57030 -13.50290 -13.23957 -12.67839 -12.37181 -12.10523 -12.05080 -11.89394 -11.69902 -11.51101 -11.43559 -11.29853 -11.24465 -11.07494 -10.93251 -10.76284 -10.73200 -10.54121 -10.50613 -10.35057 -10.00539 -9.83148 -9.66305 -9.26393 -9.02470 -8.51381 -8.33024 -7.19645 -5.99790 -3.96225 3.31866 3.38970 3.41870 3.68696 4.02023 4.31972 4.44176 4.46750 4.74037 4.74845 4.97489 5.03031 5.06334 5.16395 5.20674 5.26558 5.30139 5.32761 5.36087 5.43365 5.45415 5.48042 5.52588 5.59642 5.65990 5.70413 5.73265 5.81123 5.86248 5.92746 5.93510 5.97445 6.03972 6.11053 6.15419 6.19184 6.20713 6.26602 6.33328 6.50123 6.78478 6.83811 6.94874 6.97279 7.01853 7.10195 7.57452 7.68911 8.02597 8.20514 8.74143 9.10164 9.62693 11.13453 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.004412 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.726070 B = 6344.868118 C = 7360.360258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.164 3.836 10 N -0.517 5.517 11 C 0.064 3.936 12 C -0.112 4.112 13 C -0.103 4.103 14 C 0.129 3.871 15 C 0.042 3.958 16 C 0.032 3.968 17 N -0.526 5.526 18 C 0.081 3.919 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.119 4.119 23 C 0.017 3.983 24 C 0.064 3.936 25 O -0.356 6.356 26 H 0.263 0.737 27 H -0.015 1.015 28 H 0.022 0.978 29 H 0.015 0.985 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.036 0.964 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.732 -8.405 -3.402 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.099 0.901 9 C 0.038 3.962 10 N -0.241 5.241 11 C -0.064 4.064 12 C -0.150 4.150 13 C -0.141 4.141 14 C 0.089 3.911 15 C -0.087 4.087 16 C -0.096 4.096 17 N -0.251 5.251 18 C -0.028 4.028 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.111 4.111 24 C -0.013 4.013 25 O -0.274 6.274 26 H 0.072 0.928 27 H 0.003 0.997 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.054 0.946 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.041 -8.200 -3.742 22.890 hybrid contribution 1.333 0.798 0.480 1.626 sum 22.374 -7.401 -3.263 23.791 Atomic orbital electron populations 1.69892 1.06092 1.26703 1.51440 1.24885 0.94691 0.98730 0.94995 0.86894 0.80316 0.84193 0.78552 1.20202 1.21291 1.19338 1.21057 0.88771 0.94674 1.49801 0.90065 1.20135 0.96986 0.84321 0.94779 1.61768 1.09892 1.18259 1.34202 1.21982 1.02174 0.92408 0.89875 1.21543 0.94537 0.97489 1.01424 1.21533 0.98237 0.99666 0.94705 1.21446 0.88649 0.93459 0.87566 1.22471 0.90244 0.95064 1.00922 1.22766 0.97174 0.97058 0.92625 1.62367 1.07099 1.53438 1.02174 1.22315 0.87208 0.97507 0.95733 1.22484 0.97048 0.99363 0.96889 1.22456 0.97370 0.99314 0.96957 1.22306 0.98351 0.98280 0.96900 1.22222 1.00162 0.96725 0.96558 1.22865 0.96282 0.97116 0.94795 1.22583 0.92302 0.99928 0.86529 1.88011 1.69534 1.55701 1.14161 0.92761 0.99729 0.96039 0.96679 0.89350 0.90450 0.92335 0.91851 0.91368 0.90031 0.95849 0.89862 0.94349 0.94249 0.90190 0.92037 0.91793 0.91509 0.91964 0.91277 0.92143 0.90467 0.94585 0.89866 0.88949 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.50 -14.56 8.98 -34.44 -0.31 -14.87 16 8 H 0.08 2.55 7.37 -52.48 -0.39 2.17 16 9 C 0.16 4.09 3.79 -4.97 -0.02 4.07 16 10 N -0.52 -11.15 4.53 -236.13 -1.07 -12.22 16 11 C 0.06 1.27 5.29 -3.83 -0.02 1.25 16 12 C -0.11 -1.82 5.94 -26.64 -0.16 -1.98 16 13 C -0.10 -1.47 5.02 -26.63 -0.13 -1.60 16 14 C 0.13 1.97 0.70 -90.59 -0.06 1.90 16 15 C 0.04 0.76 3.77 -3.85 -0.01 0.74 16 16 C 0.03 0.41 4.03 -3.74 -0.02 0.39 16 17 N -0.53 -6.38 3.88 -225.02 -0.87 -7.25 16 18 C 0.08 0.82 2.66 -66.59 -0.18 0.64 16 19 C -0.12 -1.13 5.13 -25.07 -0.13 -1.26 16 20 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16 21 C -0.12 -1.03 6.83 -25.07 -0.17 -1.20 16 22 C -0.12 -1.10 5.93 -25.61 -0.15 -1.25 16 23 C 0.02 0.21 5.40 -3.71 -0.02 0.19 16 24 C 0.06 0.92 6.61 37.21 0.25 1.16 16 25 O -0.36 -5.92 9.61 -35.23 -0.34 -6.26 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H -0.01 -0.38 7.18 -51.93 -0.37 -0.75 16 28 H 0.02 0.54 7.42 -51.93 -0.39 0.16 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 1.97 6.70 -51.93 -0.35 1.62 16 31 H 0.08 1.38 7.80 -51.93 -0.40 0.98 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.53 6.00 -51.93 -0.31 1.22 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.99 6.55 -51.93 -0.34 0.65 16 38 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.87 7.42 -51.93 -0.39 0.48 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 47 H 0.08 0.79 6.68 -51.93 -0.35 0.44 16 48 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.87 6.53 -51.93 -0.34 0.53 16 50 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.07 1.13 6.48 -51.93 -0.34 0.79 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -30.95 369.24 -11.48 -42.43 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -9.47 Total: -1.23 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.40 Total: -11.08 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -1.17 Total: -46.64 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.34 Total: -6.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.95 -11.48 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939560.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.980 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds