Wall clock time and date at job start Fri Apr 10 2020 22:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48500 * 109.47698 * 270.00222 * 3 2 1 5 5 H 1.48502 * 109.47329 * 30.00624 * 3 2 1 6 6 H 1.48511 * 109.46901 * 150.00221 * 3 2 1 7 7 C 1.37878 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47347 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47093 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47087 * 180.02562 * 11 10 9 13 13 C 1.47005 * 111.00244 * 66.27740 * 12 11 10 14 14 C 1.53144 * 109.23698 * 182.24330 * 13 12 11 15 15 H 1.08991 * 109.64680 * 182.01734 * 14 13 12 16 16 C 1.53148 * 109.25670 * 61.82389 * 14 13 12 17 17 N 1.47005 * 109.24787 * 298.14301 * 16 14 13 18 18 C 1.46904 * 110.99416 * 177.76919 * 17 16 14 19 19 C 1.54265 * 110.03766 * 297.16708 * 18 17 16 20 20 C 1.54880 * 104.19806 * 217.10584 * 19 18 17 21 21 C 1.54886 * 102.75112 * 37.94159 * 20 19 18 22 22 C 1.53875 * 110.02965 * 179.97438 * 18 17 16 23 23 C 1.48372 * 111.17164 * 301.59572 * 17 16 14 24 24 C 1.53146 * 108.50941 * 58.01502 * 23 17 16 25 25 H 1.09002 * 109.64997 * 182.64375 * 24 23 17 26 26 C 1.47003 * 110.99956 * 190.00241 * 12 11 10 27 27 O 1.43188 * 109.03925 * 302.72960 * 14 13 12 28 28 H 0.97007 * 119.99992 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47347 * 59.99522 * 9 7 2 30 30 H 1.09005 * 109.46626 * 300.00201 * 9 7 2 31 31 H 1.09000 * 109.46941 * 59.99875 * 10 9 7 32 32 H 1.08994 * 109.46718 * 300.00096 * 10 9 7 33 33 H 1.09000 * 109.47183 * 60.00203 * 11 10 9 34 34 H 1.09005 * 109.46899 * 299.99966 * 11 10 9 35 35 H 1.09007 * 109.50974 * 302.17247 * 13 12 11 36 36 H 1.09008 * 109.50880 * 62.26289 * 13 12 11 37 37 H 1.08996 * 109.50681 * 58.07617 * 16 14 13 38 38 H 1.08999 * 109.50152 * 178.16838 * 16 14 13 39 39 H 1.09000 * 110.01448 * 58.61518 * 18 17 16 40 40 H 1.08994 * 110.48445 * 335.78855 * 19 18 17 41 41 H 1.09001 * 110.48347 * 98.42249 * 19 18 17 42 42 H 1.09002 * 110.76040 * 279.63044 * 20 19 18 43 43 H 1.09005 * 110.91527 * 156.32949 * 20 19 18 44 44 H 1.09000 * 110.49079 * 203.37730 * 21 20 19 45 45 H 1.09008 * 110.59764 * 80.78855 * 21 20 19 46 46 H 1.09010 * 110.03474 * 238.57038 * 22 18 17 47 47 H 1.09004 * 110.03515 * 359.95461 * 22 18 17 48 48 H 1.09004 * 109.89339 * 298.30183 * 23 17 16 49 49 H 1.09000 * 109.85495 * 177.70477 * 23 17 16 50 50 H 1.09001 * 109.50833 * 57.83456 * 26 12 11 51 51 H 1.09004 * 109.54383 * 297.72117 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4350 -6.1036 0.0007 13 6 3.1970 -6.1447 1.2572 14 6 4.2161 -7.2859 1.1922 15 1 4.7605 -7.3452 2.1346 16 6 5.1973 -7.0222 0.0464 17 7 4.4606 -6.9929 -1.2254 18 6 5.3592 -6.6894 -2.3473 19 6 5.9673 -5.2825 -2.1718 20 6 6.0303 -4.7138 -3.6110 21 6 4.7202 -5.2429 -4.2455 22 6 4.5663 -6.6648 -3.6658 23 6 3.7406 -8.2693 -1.4572 24 6 2.7862 -8.5091 -0.2837 25 1 2.2811 -9.4665 -0.4119 26 6 1.7501 -7.3824 -0.2370 27 8 3.5255 -8.5152 0.9425 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6248 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6042 -0.8905 33 1 0.8534 -5.0451 -0.8897 34 1 0.8540 -5.0445 0.8904 35 1 3.7189 -5.1980 1.3975 36 1 2.5151 -6.3115 2.0912 37 1 5.6910 -6.0632 0.2033 38 1 5.9442 -7.8156 0.0170 39 1 6.1520 -7.4354 -2.4026 40 1 5.3243 -4.6645 -1.5452 41 1 6.9675 -5.3500 -1.7440 42 1 6.9002 -5.1009 -4.1417 43 1 6.0408 -3.6238 -3.5986 44 1 4.8103 -5.2813 -5.3310 45 1 3.8745 -4.6191 -3.9556 46 1 4.9752 -7.3981 -4.3612 47 1 3.5150 -6.8789 -3.4734 48 1 4.4537 -9.0913 -1.5203 49 1 3.1701 -8.2095 -2.3840 50 1 1.2168 -7.3387 -1.1867 51 1 1.0420 -7.5724 0.5697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277948542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:31 Heat of formation + Delta-G solvation = -52.158488 kcal Electronic energy + Delta-G solvation = -27937.870682 eV Core-core repulsion = 24450.011046 eV Total energy + Delta-G solvation = -3487.859636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.69940 -39.16999 -37.50695 -35.43969 -35.27488 -33.81754 -33.12165 -29.90937 -29.69974 -28.51755 -27.29650 -26.68857 -24.89171 -24.05741 -23.14324 -21.57022 -21.29997 -20.39566 -19.47276 -18.48975 -17.93053 -17.05188 -16.69034 -16.52429 -16.38238 -16.30092 -15.75033 -15.52165 -15.30880 -15.17862 -14.72612 -14.65239 -14.27806 -14.12607 -13.83005 -13.61722 -13.21031 -12.93932 -12.75865 -12.70715 -12.60794 -12.43401 -12.36603 -12.16999 -11.95856 -11.87182 -11.79002 -11.65457 -11.51595 -11.38704 -11.33132 -11.31141 -11.22378 -10.91254 -10.53641 -10.47294 -9.22938 -8.61998 -8.18189 -6.28709 1.40016 1.41529 1.52517 2.41841 2.72737 2.97239 3.10084 3.14971 3.69149 3.84664 3.86917 3.91166 3.98980 4.07044 4.12025 4.16319 4.30115 4.40478 4.46891 4.55453 4.60278 4.62346 4.67235 4.72701 4.73504 4.75359 4.79846 4.82680 4.86101 4.88231 4.92317 4.93185 5.04938 5.06999 5.12573 5.14231 5.19262 5.27586 5.31871 5.36178 5.43476 5.55147 5.60708 5.79483 5.89460 6.14641 6.18519 6.27087 6.31841 6.34841 6.40135 6.88079 7.40255 8.93857 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.004389 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.263360 B = 6377.859697 C = 7589.193712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.075 4.075 11 C 0.071 3.929 12 N -0.491 5.491 13 C 0.034 3.966 14 C 0.095 3.905 15 H 0.124 0.876 16 C 0.042 3.958 17 N -0.501 5.501 18 C 0.086 3.914 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.112 4.112 23 C 0.036 3.964 24 C 0.093 3.907 25 H 0.128 0.872 26 C 0.033 3.967 27 O -0.389 6.389 28 H 0.263 0.737 29 H -0.011 1.011 30 H -0.015 1.015 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.010 0.990 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.039 0.961 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.896 -19.498 -4.663 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.113 4.113 11 C -0.057 4.057 12 N -0.215 5.215 13 C -0.095 4.095 14 C 0.037 3.963 15 H 0.142 0.858 16 C -0.087 4.087 17 N -0.225 5.225 18 C -0.022 4.022 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.092 4.092 24 C 0.035 3.965 25 H 0.146 0.854 26 C -0.095 4.095 27 O -0.308 6.308 28 H 0.071 0.929 29 H 0.007 0.993 30 H 0.003 0.997 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.113 0.887 50 H 0.106 0.894 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.741 -19.118 -4.885 22.961 hybrid contribution -0.212 0.726 0.655 1.001 sum 11.529 -18.392 -4.230 22.115 Atomic orbital electron populations 1.70103 1.07811 1.27655 1.51953 1.25962 0.95725 1.03270 0.94813 0.85485 0.78707 0.78562 0.78531 1.19724 1.20743 1.18746 1.21652 0.93391 0.92315 1.50132 0.92403 1.18966 0.94411 0.93340 0.94328 1.21231 0.97518 0.92340 1.00222 1.21994 0.93493 0.91236 0.99000 1.62211 1.24633 1.01659 1.32960 1.22658 0.96688 0.99806 0.90356 1.22515 0.91886 0.83045 0.98850 0.85829 1.22526 0.94601 1.01221 0.90303 1.62687 1.27668 1.31522 1.00671 1.22273 0.92909 0.96112 0.90945 1.22358 0.99724 0.95661 0.97359 1.22430 0.97944 0.99968 0.95527 1.22270 0.97410 0.96255 0.99847 1.22208 1.00716 0.97034 0.94992 1.22902 0.97060 0.90206 0.99014 1.22582 0.91328 0.98752 0.83867 0.85407 1.22679 0.95487 0.90105 1.01235 1.88089 1.65987 1.35817 1.40862 0.92851 0.99257 0.99661 0.93806 0.93016 0.91822 0.97147 0.90337 0.96010 0.89967 0.94538 0.94421 0.92341 0.91679 0.90459 0.92440 0.91014 0.93503 0.90900 0.91287 0.94289 0.88683 0.89430 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.32 9.11 25.60 0.23 -31.08 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.08 -3.23 5.09 30.59 0.16 -3.07 16 11 C 0.07 2.56 4.96 86.30 0.43 2.99 16 12 N -0.49 -14.50 3.02 -895.04 -2.71 -17.21 16 13 C 0.03 0.94 4.85 86.33 0.42 1.36 16 14 C 0.10 2.19 4.01 30.69 0.12 2.31 16 15 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 16 C 0.04 0.92 4.90 86.33 0.42 1.34 16 17 N -0.50 -11.31 2.82 -861.87 -2.43 -13.74 16 18 C 0.09 1.79 2.67 45.64 0.12 1.92 16 19 C -0.11 -2.57 5.24 31.67 0.17 -2.40 16 20 C -0.12 -2.57 6.91 31.88 0.22 -2.35 16 21 C -0.12 -2.63 6.83 31.69 0.22 -2.42 16 22 C -0.11 -2.22 5.93 31.34 0.19 -2.03 16 23 C 0.04 0.71 4.83 86.07 0.42 1.12 16 24 C 0.09 1.93 3.97 30.69 0.12 2.05 16 25 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 26 C 0.03 0.83 5.06 86.33 0.44 1.27 16 27 O -0.39 -9.44 10.58 -148.98 -1.58 -11.02 16 28 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 29 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 31 H 0.04 1.86 6.51 -2.39 -0.02 1.84 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 34 H 0.01 0.39 8.12 -2.38 -0.02 0.38 16 35 H 0.08 2.36 6.39 -2.38 -0.02 2.34 16 36 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.08 1.85 7.03 -2.39 -0.02 1.84 16 38 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 1.69 7.90 -2.39 -0.02 1.67 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.07 1.50 6.09 -2.39 -0.01 1.48 16 48 H 0.04 0.72 8.14 -2.38 -0.02 0.71 16 49 H 0.10 1.72 6.09 -2.39 -0.01 1.71 16 50 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 51 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -65.58 375.93 0.74 -64.84 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.86 Total: 14.73 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 4.28 Total: -26.92 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -4.85 Total: -88.66 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.58 Total: -11.02 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.58 0.74 -64.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277948542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.677 kcal (2) G-P(sol) polarization free energy of solvation -65.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds