Wall clock time and date at job start Fri Apr 10 2020 22:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46755 * 2 1 4 4 C 1.36747 * 127.13373 * 264.79236 * 3 2 1 5 5 C 1.50701 * 126.34650 * 359.97438 * 4 3 2 6 6 C 1.53001 * 109.47038 * 89.99867 * 5 4 3 7 7 C 1.50698 * 109.46603 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00599 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99966 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99469 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00230 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47322 * 90.00230 * 11 9 7 13 13 H 1.48503 * 109.47050 * 209.99859 * 11 9 7 14 14 H 1.48501 * 109.47181 * 329.99691 * 11 9 7 15 15 N 1.30290 * 107.30337 * 180.02562 * 4 3 2 16 16 N 1.28529 * 110.05479 * 359.72622 * 15 4 3 17 17 C 1.31219 * 109.85837 * 0.45483 * 16 15 4 18 18 N 1.38580 * 126.47018 * 179.82445 * 17 16 15 19 19 C 1.46852 * 110.99724 * 271.78891 * 18 17 16 20 20 C 1.53037 * 109.52018 * 185.84034 * 19 18 17 21 21 C 1.53113 * 109.27912 * 300.81891 * 20 19 18 22 22 C 1.53120 * 109.16040 * 57.65646 * 21 20 19 23 23 H 1.09000 * 109.49984 * 62.28691 * 22 21 20 24 24 O 1.42902 * 109.49971 * 182.40247 * 22 21 20 25 25 C 1.42898 * 114.00444 * 269.79909 * 24 22 21 26 26 C 1.46850 * 111.00171 * 35.99606 * 18 17 16 27 27 H 1.08994 * 109.47190 * 299.99806 * 1 2 3 28 28 H 1.08992 * 109.47228 * 60.00740 * 1 2 3 29 29 H 1.08999 * 109.46454 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47586 * 239.99982 * 2 1 3 31 31 H 1.09001 * 109.47009 * 119.99120 * 2 1 3 32 32 H 1.09004 * 109.46747 * 209.99772 * 5 4 3 33 33 H 1.09002 * 109.46877 * 329.99813 * 5 4 3 34 34 H 1.08998 * 109.47199 * 300.00029 * 6 5 4 35 35 H 1.08996 * 109.46952 * 60.00427 * 6 5 4 36 36 H 0.97003 * 120.00137 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.45891 * 65.82414 * 19 18 17 38 38 H 1.08999 * 109.44934 * 305.85123 * 19 18 17 39 39 H 1.09003 * 109.49712 * 180.87636 * 20 19 18 40 40 H 1.08993 * 109.53617 * 60.78251 * 20 19 18 41 41 H 1.09005 * 109.52318 * 297.74995 * 21 20 19 42 42 H 1.09002 * 109.52217 * 177.56163 * 21 20 19 43 43 H 1.08998 * 109.47658 * 180.02562 * 25 24 22 44 44 H 1.09002 * 109.47093 * 300.00966 * 25 24 22 45 45 H 1.09004 * 109.46326 * 60.00253 * 25 24 22 46 46 H 1.09002 * 109.45882 * 54.14570 * 26 18 17 47 47 H 1.09000 * 109.46440 * 294.18299 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3867 2.1266 -1.0857 5 6 2.3680 1.6787 -2.5245 6 6 1.0071 2.0054 -3.1427 7 6 0.9888 1.5580 -4.5816 8 1 1.8604 1.0874 -5.0121 9 6 -0.1408 1.7495 -5.3488 10 7 -1.2020 2.3231 -4.8248 11 14 -0.1638 1.1944 -7.1322 12 1 -0.6517 -0.2061 -7.2085 13 1 -1.0675 2.0765 -7.9136 14 1 1.2093 1.2715 -7.6924 15 7 2.7579 3.2954 -0.6455 16 7 2.6445 3.3408 0.6340 17 6 2.2003 2.1907 1.0833 18 7 1.9564 1.8623 2.4073 19 6 3.1650 1.3283 3.0482 20 6 2.8237 0.8426 4.4588 21 6 2.2649 2.0117 5.2745 22 6 1.0355 2.5805 4.5605 23 1 0.2613 1.8153 4.5036 24 8 0.5411 3.7075 5.2867 25 6 -0.4341 3.3781 6.2779 26 6 1.4286 3.0158 3.1471 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8935 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 3.1519 2.1973 -3.0766 33 1 2.5403 0.6034 -2.5725 34 1 0.2234 1.4868 -2.5905 35 1 0.8350 3.0806 -3.0947 36 1 -1.9966 2.4582 -5.3645 37 1 3.9211 2.1112 3.1066 38 1 3.5496 0.4949 2.4603 39 1 3.7242 0.4607 4.9399 40 1 2.0779 0.0499 4.4009 41 1 3.0245 2.7880 5.3662 42 1 1.9800 1.6605 6.2663 43 1 -0.7594 4.2871 6.7839 44 1 -1.2906 2.9019 5.8007 45 1 0.0037 2.6940 7.0049 46 1 0.5523 3.4081 2.6309 47 1 2.1929 3.7908 3.2050 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339515581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:19 Heat of formation + Delta-G solvation = 25.217895 kcal Electronic energy + Delta-G solvation = -26319.276714 eV Core-core repulsion = 22731.232026 eV Total energy + Delta-G solvation = -3588.044688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61571 -39.65525 -37.36501 -35.47757 -34.16910 -33.24070 -31.59874 -30.61963 -30.14306 -28.43535 -26.78676 -25.44295 -24.68665 -23.73040 -23.05046 -21.89803 -21.06807 -20.01252 -19.62928 -17.61043 -16.69376 -16.37061 -16.06819 -15.86835 -15.41107 -15.25503 -14.92754 -14.57500 -14.36349 -14.11310 -13.74582 -13.43208 -13.24401 -13.09492 -12.98226 -12.79091 -12.30041 -12.14291 -12.03072 -11.41169 -11.38324 -11.27913 -11.25449 -11.07761 -11.01705 -10.97210 -10.94130 -10.68225 -10.30726 -9.98163 -9.85262 -9.80227 -9.71696 -9.22269 -9.02395 -8.40854 -8.20809 -6.05466 -4.09501 2.09345 2.43633 3.26792 3.28911 3.32515 3.36227 3.39457 3.95538 4.40954 4.41638 4.51751 4.61264 4.78143 4.82405 4.98064 5.03168 5.07133 5.08464 5.14887 5.20786 5.22181 5.29894 5.30582 5.39127 5.42312 5.45925 5.56344 5.61009 5.69662 5.71931 5.80269 5.82577 5.93098 5.98406 6.28926 6.36208 6.39468 6.47440 6.57104 6.68820 6.94815 6.96473 7.46663 7.57702 7.69788 7.92176 8.29472 8.96505 9.18699 9.54955 11.05541 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.023463 B = 0.003015 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.065903 B = 9286.048394 C = 9561.233179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.466 5.466 4 C 0.217 3.783 5 C -0.032 4.032 6 C 0.032 3.968 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.891 5.891 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 N -0.298 5.298 16 N -0.314 5.314 17 C 0.324 3.676 18 N -0.453 5.453 19 C 0.059 3.941 20 C -0.112 4.112 21 C -0.143 4.143 22 C 0.094 3.906 23 H 0.071 0.929 24 O -0.382 6.382 25 C 0.033 3.967 26 C 0.075 3.925 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.017 0.983 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.086 0.914 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 -6.847 22.078 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 N -0.159 5.159 4 C -0.051 4.051 5 C -0.071 4.071 6 C -0.006 4.006 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.197 1.197 15 N -0.137 5.137 16 N -0.158 5.158 17 C -0.032 4.032 18 N -0.179 5.179 19 C -0.068 4.068 20 C -0.150 4.150 21 C -0.181 4.181 22 C 0.035 3.965 23 H 0.089 0.911 24 O -0.300 6.300 25 C -0.064 4.064 26 C -0.052 4.052 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.104 0.896 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.541 -5.554 22.038 23.176 hybrid contribution -0.310 -1.327 -0.810 1.585 sum 4.232 -6.880 21.228 22.713 Atomic orbital electron populations 1.22146 0.93488 1.03033 1.03993 1.21769 0.96444 0.78778 1.03943 1.46372 1.49558 1.13920 1.06069 1.25627 0.98515 0.88469 0.92445 1.20461 1.03829 1.00179 0.82675 1.19097 0.88509 0.97946 0.95087 1.21136 0.99429 1.39841 0.95817 0.92332 1.25007 0.95611 0.95094 0.98520 1.69973 1.03638 1.42775 1.36613 0.86566 0.78056 0.78429 0.84789 1.20687 1.21184 1.19747 1.74043 1.20678 1.16797 1.02187 1.74504 1.18321 1.18321 1.04637 1.22008 1.04576 0.89038 0.87614 1.58353 1.30257 1.33002 0.96336 1.22242 0.89783 0.99667 0.95123 1.21539 1.01715 0.97992 0.93708 1.22115 0.98426 0.98426 0.99144 1.22040 0.95579 0.88182 0.90654 0.91116 1.87892 1.58629 1.32074 1.51440 1.22794 0.90960 1.01619 0.91024 1.21898 1.01229 0.90320 0.91752 0.91956 0.90494 0.90793 0.88571 0.89454 0.89311 0.91248 0.96473 0.95670 0.92872 0.93090 0.90478 0.90420 0.90734 0.90892 0.91400 0.89554 0.93859 0.94120 0.89563 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.48 6.79 -4.04 -0.03 1.45 16 3 N -0.47 -7.85 2.81 -114.08 -0.32 -8.17 16 4 C 0.22 4.33 7.32 -154.01 -1.13 3.20 16 5 C -0.03 -0.64 5.52 -27.88 -0.15 -0.80 16 6 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 11 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 N -0.30 -6.55 12.18 32.99 0.40 -6.15 16 16 N -0.31 -6.36 11.69 30.31 0.35 -6.01 16 17 C 0.32 5.50 6.71 -318.88 -2.14 3.36 16 18 N -0.45 -5.96 4.67 -174.55 -0.82 -6.78 16 19 C 0.06 0.62 5.40 -3.83 -0.02 0.60 16 20 C -0.11 -0.85 6.09 -26.65 -0.16 -1.01 16 21 C -0.14 -1.19 5.62 -26.61 -0.15 -1.34 16 22 C 0.09 0.96 2.77 -26.65 -0.07 0.89 16 23 H 0.07 0.68 7.79 -51.93 -0.40 0.27 16 24 O -0.38 -4.24 10.35 -35.23 -0.36 -4.60 16 25 C 0.03 0.25 10.82 101.05 1.09 1.34 16 26 C 0.08 0.99 4.74 -3.83 -0.02 0.97 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.31 6.80 -51.93 -0.35 0.96 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 1.19 7.11 -51.93 -0.37 0.82 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 33 H 0.07 1.25 7.18 -51.93 -0.37 0.87 16 34 H 0.02 0.45 6.80 -51.93 -0.35 0.09 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 45 H 0.04 0.25 7.95 -51.93 -0.41 -0.16 16 46 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 47 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -32.74 378.80 -10.40 -43.14 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.13 Total: -2.10 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.95 Total: -5.52 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.36 Total: -52.72 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.36 Total: -4.60 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.74 -10.40 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339515581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.357 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds