Wall clock time and date at job start Fri Apr 10 2020 22:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47881 * 2 1 4 4 C 1.53004 * 109.46919 * 239.99495 * 2 1 3 5 5 C 1.53001 * 109.47251 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47288 * 60.00244 * 5 4 2 7 7 C 1.53004 * 109.47026 * 300.00342 * 6 5 4 8 8 C 1.53001 * 109.47366 * 59.99706 * 7 6 5 9 9 H 1.09000 * 109.46814 * 60.00178 * 8 7 6 10 10 C 1.50695 * 109.47232 * 179.97438 * 8 7 6 11 11 O 1.21287 * 119.99969 * 36.71535 * 10 8 7 12 12 N 1.34773 * 120.00611 * 216.71178 * 10 8 7 13 13 C 1.46930 * 120.62248 * 4.49250 * 12 10 8 14 14 C 1.52764 * 109.00593 * 233.58185 * 13 12 10 15 15 C 1.53036 * 109.38620 * 305.58727 * 14 13 12 16 16 C 1.52992 * 109.45205 * 181.25097 * 15 14 13 17 17 C 1.50702 * 109.46956 * 64.94447 * 16 15 14 18 18 H 1.08002 * 119.99855 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00071 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00316 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00184 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46869 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47562 * 119.99571 * 21 19 17 24 24 H 1.48501 * 109.47288 * 239.99895 * 21 19 17 25 25 C 1.53049 * 109.53415 * 61.24167 * 15 14 13 26 26 C 1.46917 * 120.63761 * 184.77283 * 12 10 8 27 27 H 1.09006 * 109.46808 * 300.00619 * 1 2 3 28 28 H 1.08996 * 109.47113 * 59.99487 * 1 2 3 29 29 H 1.08988 * 109.47724 * 180.02562 * 1 2 3 30 30 H 1.00905 * 110.99764 * 300.00200 * 3 2 1 31 31 H 1.00895 * 110.99715 * 63.95028 * 3 2 1 32 32 H 1.08997 * 109.46906 * 60.00711 * 4 2 1 33 33 H 1.09000 * 109.47375 * 300.00273 * 4 2 1 34 34 H 1.09000 * 109.46814 * 300.00200 * 5 4 2 35 35 H 1.08997 * 109.47129 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46830 * 59.99545 * 6 5 4 37 37 H 1.08996 * 109.47308 * 180.02562 * 6 5 4 38 38 H 1.09005 * 109.47204 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.47145 * 299.99491 * 7 6 5 40 40 H 1.08996 * 109.59259 * 353.41510 * 13 12 10 41 41 H 1.09007 * 109.58746 * 113.84697 * 13 12 10 42 42 H 1.09004 * 109.56371 * 185.55681 * 14 13 12 43 43 H 1.09000 * 109.38771 * 65.51979 * 14 13 12 44 44 H 1.08996 * 109.46453 * 301.22569 * 15 14 13 45 45 H 1.09006 * 109.47571 * 184.94240 * 16 15 14 46 46 H 1.09004 * 109.47616 * 304.94607 * 16 15 14 47 47 H 0.96998 * 119.99730 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.49436 * 178.68390 * 25 15 14 49 49 H 1.08996 * 109.49764 * 58.58785 * 25 15 14 50 50 H 1.08999 * 109.58585 * 246.15876 * 26 12 10 51 51 H 1.09000 * 109.58809 * 6.43430 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7220 -1.2490 6 6 4.0795 -1.4436 0.0003 7 6 3.5695 -0.7223 1.2495 8 6 2.0395 -0.7217 1.2493 9 1 1.6758 -1.7492 1.2491 10 6 1.5372 -0.0118 2.4800 11 8 2.1292 0.9578 2.9049 12 7 0.4302 -0.4541 3.1086 13 6 -0.2416 -1.6833 2.6652 14 6 -1.7163 -1.3791 2.4075 15 6 -2.3296 -0.7430 3.6570 16 6 -3.8141 -0.4663 3.4115 17 6 -4.5446 -1.7715 3.2274 18 1 -4.0039 -2.7050 3.2798 19 6 -5.9029 -1.7739 2.9910 20 7 -6.5613 -0.6372 2.9266 21 14 -6.8083 -3.3917 2.7620 22 1 -5.8471 -4.5177 2.8789 23 1 -7.8563 -3.5246 3.8058 24 1 -7.4411 -3.4191 1.4189 25 6 -1.6104 0.5719 3.9674 26 6 -0.1313 0.2867 4.2463 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.6963 1.8828 -0.8158 31 1 1.7504 1.8637 0.8463 32 1 1.6767 -0.2075 -2.1392 33 1 1.6766 -1.7490 -1.2492 34 1 3.9336 0.3055 -1.2488 35 1 3.9332 -1.2355 -2.1391 36 1 3.7157 -2.4711 0.0001 37 1 5.1695 -1.4436 0.0007 38 1 3.9321 -1.2366 2.1396 39 1 3.9333 0.3053 1.2497 40 1 0.2220 -2.0421 1.7463 41 1 -0.1586 -2.4452 3.4404 42 1 -2.2442 -2.3036 2.1736 43 1 -1.8021 -0.6888 1.5683 44 1 -2.2218 -1.4238 4.5014 45 1 -4.2309 0.0658 4.2667 46 1 -3.9268 0.1428 2.5145 47 1 -7.5169 -0.6390 2.7607 48 1 -2.0630 1.0359 4.8436 49 1 -1.6967 1.2440 3.1137 50 1 -0.0391 -0.3111 5.1530 51 1 0.4068 1.2263 4.3719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335416884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:21 Heat of formation + Delta-G solvation = -85.594500 kcal Electronic energy + Delta-G solvation = -27849.528129 eV Core-core repulsion = 24360.218599 eV Total energy + Delta-G solvation = -3489.309531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97974 -39.63455 -38.41463 -35.70372 -34.74072 -34.02679 -32.62965 -31.54653 -30.15625 -29.80713 -27.65564 -26.39262 -24.65831 -24.10741 -23.07158 -22.15713 -21.26517 -20.27182 -19.43085 -18.42242 -18.21795 -17.15758 -16.84597 -16.53023 -15.88634 -15.79698 -15.53714 -15.28153 -15.08782 -14.81391 -14.46839 -14.36884 -14.27115 -14.01704 -13.74185 -13.66215 -13.57739 -13.39915 -13.01766 -12.87771 -12.73951 -12.53253 -12.51590 -12.42199 -12.30609 -12.10631 -11.93920 -11.73015 -11.44974 -11.37514 -11.30813 -11.10498 -10.96054 -10.83676 -10.53488 -10.40576 -9.56934 -9.51484 -8.16495 -6.25927 1.40772 1.42189 1.53972 1.61814 2.04585 2.42666 3.17673 3.44533 3.48329 3.70603 3.83146 3.95978 4.01271 4.03498 4.16373 4.20731 4.26635 4.29758 4.40278 4.41996 4.47536 4.55581 4.65424 4.67254 4.73562 4.80398 4.80466 4.88233 4.91529 4.97496 5.02818 5.08578 5.12448 5.19511 5.30160 5.31506 5.35985 5.38619 5.41429 5.42165 5.44618 5.54983 5.61025 5.71413 5.82083 5.89453 6.24811 6.28845 6.45289 6.59426 6.91215 7.20847 7.43179 8.95642 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.019694 B = 0.003667 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.383759 B = 7634.578506 C = 8222.442745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.136 3.864 3 N -0.834 5.834 4 C -0.101 4.101 5 C -0.109 4.109 6 C -0.111 4.111 7 C -0.092 4.092 8 C -0.094 4.094 9 H 0.108 0.892 10 C 0.516 3.484 11 O -0.574 6.574 12 N -0.605 5.605 13 C 0.106 3.894 14 C -0.116 4.116 15 C -0.072 4.072 16 C 0.034 3.966 17 C -0.524 4.524 18 H 0.068 0.932 19 C -0.003 4.003 20 N -0.938 5.938 21 Si 0.959 3.041 22 H -0.256 1.256 23 H -0.284 1.284 24 H -0.282 1.282 25 C -0.119 4.119 26 C 0.118 3.882 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.343 0.657 31 H 0.336 0.664 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.060 0.940 45 H -0.017 1.017 46 H -0.015 1.015 47 H 0.260 0.740 48 H 0.068 0.932 49 H 0.045 0.955 50 H 0.076 0.924 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.882 -3.385 -7.421 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.042 3.958 3 N -0.365 5.365 4 C -0.139 4.139 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.130 4.130 8 C -0.115 4.115 9 H 0.126 0.874 10 C 0.306 3.694 11 O -0.454 6.454 12 N -0.337 5.337 13 C -0.016 4.016 14 C -0.154 4.154 15 C -0.091 4.091 16 C -0.003 4.003 17 C -0.562 4.562 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.579 5.579 21 Si 0.784 3.216 22 H -0.180 1.180 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.157 4.157 26 C -0.004 4.004 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.001 0.999 46 H 0.003 0.997 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.094 0.906 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.768 -3.144 -7.232 22.215 hybrid contribution -2.488 0.161 0.308 2.512 sum 18.280 -2.982 -6.924 19.774 Atomic orbital electron populations 1.22908 0.97088 1.03290 1.01581 1.20597 0.91025 0.89902 0.94229 1.58912 1.67122 1.02700 1.07808 1.21566 0.96656 1.00358 0.95303 1.21405 0.94630 1.01184 0.97457 1.21491 1.00619 0.99126 0.93621 1.21260 0.91634 1.01775 0.98295 1.21531 0.98502 1.00369 0.91091 0.87388 1.21110 0.79406 0.84053 0.84823 1.90637 1.57894 1.29360 1.67506 1.48278 1.26735 1.26288 1.32396 1.21974 0.92352 0.85595 1.01638 1.21808 0.94320 1.01660 0.97637 1.21021 0.94732 0.95544 0.97780 1.19006 0.91792 0.95452 0.94071 1.21686 0.93253 0.93890 1.47342 0.91429 1.25950 0.99050 0.99573 0.95409 1.70121 1.08716 1.27704 1.51344 0.85492 0.78611 0.80076 0.77444 1.17981 1.21048 1.20823 1.21881 0.94757 0.97897 1.01189 1.21514 0.92923 0.97303 0.88701 0.94087 0.91990 0.90859 0.84308 0.85007 0.91224 0.90414 0.91828 0.91186 0.91139 0.91257 0.92958 0.91709 0.87527 0.90155 0.90724 0.92522 0.92199 0.99869 0.99699 0.93107 0.91378 0.93629 0.90571 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.14 6.50 71.98 0.47 -3.67 16 2 C 0.14 2.64 0.58 3.53 0.00 2.64 16 3 N -0.83 -17.77 7.32 -151.56 -1.11 -18.88 16 4 C -0.10 -1.55 4.89 30.60 0.15 -1.40 16 5 C -0.11 -1.62 5.77 30.59 0.18 -1.44 16 6 C -0.11 -1.68 5.92 30.60 0.18 -1.49 16 7 C -0.09 -1.87 4.73 30.60 0.14 -1.73 16 8 C -0.09 -1.95 1.47 -11.54 -0.02 -1.97 16 9 H 0.11 1.89 5.64 -2.39 -0.01 1.87 16 10 C 0.52 14.05 5.04 87.66 0.44 14.49 16 11 O -0.57 -19.26 14.45 -3.05 -0.04 -19.30 16 12 N -0.60 -16.10 2.49 -819.74 -2.04 -18.14 16 13 C 0.11 2.54 5.24 86.22 0.45 2.99 16 14 C -0.12 -3.68 4.85 30.53 0.15 -3.54 16 15 C -0.07 -2.71 2.10 -10.77 -0.02 -2.73 16 16 C 0.03 1.70 4.45 29.85 0.13 1.84 16 17 C -0.52 -28.00 8.39 25.60 0.21 -27.79 16 18 H 0.07 3.39 7.05 -2.91 -0.02 3.37 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.94 -56.34 13.29 21.45 0.28 -56.06 16 21 Si 0.96 42.83 29.54 68.60 2.03 44.85 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 C -0.12 -3.96 5.36 30.67 0.16 -3.79 16 26 C 0.12 3.38 6.42 86.36 0.55 3.94 16 27 H 0.04 1.10 5.71 -2.38 -0.01 1.09 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.51 6.56 -2.39 -0.02 1.49 16 30 H 0.34 6.29 9.00 -89.69 -0.81 5.48 16 31 H 0.34 8.79 6.98 -89.70 -0.63 8.16 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.13 7.60 -2.39 -0.02 1.11 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.06 1.64 7.32 -2.39 -0.02 1.62 16 40 H 0.11 2.02 4.19 -2.39 -0.01 2.01 16 41 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.07 2.52 6.91 -2.38 -0.02 2.50 16 43 H 0.06 1.88 5.62 -2.39 -0.01 1.87 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 46 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 47 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.08 2.39 7.03 -2.39 -0.02 2.37 16 Total: -1.00 -64.90 367.49 2.26 -62.64 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.51 Total: 28.22 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.65 Total: -23.34 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -2.87 Total: -93.08 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.04 Total: -19.30 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -64.90 2.26 -62.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335416884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.952 kcal (2) G-P(sol) polarization free energy of solvation -64.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds