Wall clock time and date at job start Fri Apr 10 2020 22:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47531 * 2 1 4 4 C 1.53004 * 109.46828 * 240.00019 * 2 1 3 5 5 C 1.53000 * 109.46828 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47343 * 60.00425 * 5 4 2 7 7 C 1.53008 * 109.46687 * 299.99917 * 6 5 4 8 8 C 1.53000 * 109.47161 * 59.99971 * 7 6 5 9 9 H 1.08997 * 109.47101 * 60.00211 * 8 7 6 10 10 C 1.53004 * 109.46828 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47022 * 294.99984 * 10 8 7 12 12 O 1.21291 * 120.00093 * 359.97438 * 11 10 8 13 13 N 1.34772 * 120.00073 * 180.02562 * 11 10 8 14 14 C 1.46965 * 120.59237 * 359.71992 * 13 11 10 15 15 C 1.53818 * 108.39963 * 124.75893 * 14 13 11 16 16 N 1.46966 * 108.57943 * 49.63555 * 15 14 13 17 17 C 1.36934 * 120.59032 * 124.62656 * 16 15 14 18 18 H 1.08002 * 119.99629 * 208.17237 * 17 16 15 19 19 C 1.38805 * 120.00548 * 28.17660 * 17 16 15 20 20 N 1.31627 * 119.99746 * 17.56501 * 19 17 16 21 21 Si 1.86795 * 120.00236 * 197.56894 * 19 17 16 22 22 H 1.48494 * 109.47314 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47094 * 119.99979 * 21 19 17 24 24 H 1.48505 * 109.47359 * 239.99876 * 21 19 17 25 25 C 1.46967 * 118.80935 * 304.64907 * 16 15 14 26 26 C 1.46966 * 120.59484 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47120 * 299.99803 * 1 2 3 28 28 H 1.09001 * 109.46880 * 59.99732 * 1 2 3 29 29 H 1.08997 * 109.47101 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47582 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47015 * 300.00522 * 3 2 1 32 32 H 1.09001 * 109.46758 * 59.99975 * 3 2 1 33 33 H 1.08997 * 109.47149 * 299.99811 * 4 2 1 34 34 H 1.09001 * 109.47186 * 60.00437 * 4 2 1 35 35 H 1.09001 * 109.47120 * 180.02562 * 5 4 2 36 36 H 1.08994 * 109.47785 * 300.00112 * 5 4 2 37 37 H 1.08995 * 109.47249 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47334 * 59.99174 * 6 5 4 39 39 H 1.09001 * 109.46626 * 299.99690 * 7 6 5 40 40 H 1.09003 * 109.46787 * 180.02562 * 7 6 5 41 41 H 1.09001 * 109.46937 * 54.99505 * 10 8 7 42 42 H 1.08996 * 109.46751 * 174.99741 * 10 8 7 43 43 H 1.09004 * 109.60818 * 244.53757 * 14 13 11 44 44 H 1.08996 * 109.61342 * 5.05114 * 14 13 11 45 45 H 1.09001 * 109.73638 * 289.84582 * 15 14 13 46 46 H 1.08999 * 109.52820 * 169.30356 * 15 14 13 47 47 H 0.96999 * 119.99935 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.60963 * 295.47932 * 25 16 15 49 49 H 1.09002 * 109.74236 * 175.05453 * 25 16 15 50 50 H 1.08994 * 109.60979 * 354.94422 * 26 13 11 51 51 H 1.09001 * 109.60784 * 115.46262 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0004 7 6 3.5705 -0.7204 1.2489 8 6 2.0405 -0.7210 1.2492 9 1 1.6775 -1.7488 1.2495 10 6 1.5306 0.0008 2.4982 11 6 1.9298 -0.7766 3.7258 12 8 2.5598 -1.8069 3.6129 13 7 1.5860 -0.3276 4.9492 14 6 0.8271 0.9217 5.1014 15 6 -0.4430 0.6221 5.9157 16 7 -0.0605 -0.1257 7.1217 17 6 -0.4091 0.3311 8.3647 18 1 0.2042 0.0896 9.2202 19 6 -1.5506 1.1043 8.5251 20 7 -2.4740 1.1171 7.5872 21 14 -1.7763 2.1268 10.0719 22 1 -0.6046 1.9393 10.9647 23 1 -1.8948 3.5608 9.7045 24 1 -3.0094 1.6930 10.7767 25 6 0.7032 -1.3721 6.9697 26 6 1.9680 -1.0757 6.1552 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.9333 -1.2342 -2.1398 36 1 3.9330 0.3070 -1.2498 37 1 5.1705 -1.4417 -0.0009 38 1 3.7175 -2.4695 -0.0002 39 1 3.9335 0.3073 1.2486 40 1 3.9346 -1.2338 2.1389 41 1 1.9649 0.9995 2.5434 42 1 0.4443 0.0787 2.4547 43 1 1.4360 1.6580 5.6260 44 1 0.5516 1.3045 4.1187 45 1 -1.1313 0.0248 5.3177 46 1 -0.9214 1.5586 6.2022 47 1 -3.2719 1.6571 7.6994 48 1 0.0965 -2.1114 6.4469 49 1 0.9816 -1.7554 7.9514 50 1 2.4461 -2.0123 5.8685 51 1 2.6564 -0.4786 6.7532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336425796.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:47 Heat of formation + Delta-G solvation = -51.141972 kcal Electronic energy + Delta-G solvation = -27392.964113 eV Core-core repulsion = 23905.148556 eV Total energy + Delta-G solvation = -3487.815557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 5.08 seconds Orbital eigenvalues (eV) -41.57084 -40.17008 -38.34374 -35.58878 -34.36878 -33.53405 -32.94529 -31.78928 -29.34402 -28.32683 -28.04059 -26.65690 -25.36815 -24.44318 -23.13062 -22.11178 -21.58122 -20.02728 -19.08614 -18.67852 -17.69976 -17.03136 -16.69471 -16.49795 -16.05095 -15.55662 -15.47270 -15.37562 -15.21376 -14.98869 -14.88362 -14.69126 -14.06584 -13.92862 -13.62019 -13.46118 -13.29095 -13.20362 -12.76030 -12.68969 -12.67184 -12.48254 -12.42966 -12.24843 -12.18614 -12.08788 -12.02317 -11.90797 -11.82560 -11.65231 -11.56096 -11.03948 -10.93112 -10.71905 -10.61510 -10.42373 -9.77002 -8.65913 -7.89335 -5.37388 1.47481 1.50513 1.60494 1.70405 2.10840 2.51278 3.25129 3.55373 3.59254 3.70808 3.79217 3.95955 4.16895 4.22374 4.23523 4.28481 4.38766 4.39315 4.46799 4.51655 4.54546 4.58290 4.65080 4.66782 4.73211 4.76037 4.80752 4.85912 4.87993 4.92372 5.02833 5.07667 5.10994 5.15525 5.23281 5.24681 5.28386 5.28892 5.33799 5.37655 5.47540 5.54477 5.58185 5.61119 5.63851 5.68936 5.76655 6.35002 6.56224 7.10408 7.25796 7.77759 8.31507 9.15839 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.003277 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.370996 B = 8542.023430 C = 9175.494153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.117 4.117 8 C -0.051 4.051 9 H 0.050 0.950 10 C -0.133 4.133 11 C 0.506 3.494 12 O -0.582 6.582 13 N -0.606 5.606 14 C 0.096 3.904 15 C 0.163 3.837 16 N -0.609 5.609 17 C -0.266 4.266 18 H 0.067 0.933 19 C -0.045 4.045 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.295 1.295 25 C 0.133 3.867 26 C 0.106 3.894 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.107 0.893 45 H -0.001 1.001 46 H 0.075 0.925 47 H 0.252 0.748 48 H 0.006 0.994 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.109 1.665 -17.899 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.056 4.056 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.070 4.070 9 H 0.069 0.931 10 C -0.172 4.172 11 C 0.297 3.703 12 O -0.463 6.463 13 N -0.338 5.338 14 C -0.028 4.028 15 C 0.037 3.963 16 N -0.333 5.333 17 C -0.396 4.396 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.193 1.193 23 H -0.212 1.212 24 H -0.222 1.222 25 C 0.006 3.994 26 C -0.019 4.019 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.017 0.983 46 H 0.094 0.906 47 H 0.061 0.939 48 H 0.024 0.976 49 H 0.089 0.911 50 H 0.102 0.898 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.289 1.209 -17.928 20.706 hybrid contribution -0.705 0.089 1.263 1.449 sum 9.584 1.298 -16.665 19.268 Atomic orbital electron populations 1.21972 0.94594 1.01553 1.02351 1.20506 0.95177 0.95986 0.93883 1.22032 1.01581 0.94471 1.02267 1.21569 0.95681 0.99993 0.97051 1.21569 0.95521 1.01133 0.97162 1.21478 1.00098 0.98910 0.94785 1.21668 0.94807 1.00739 0.98253 1.20822 0.95776 0.98145 0.92243 0.93131 1.21928 1.03499 1.00590 0.91167 1.21338 0.78388 0.85452 0.85133 1.90590 1.42581 1.26414 1.86714 1.48195 1.54614 1.25082 1.05915 1.22546 0.93613 0.84915 1.01696 1.21108 0.92255 0.96851 0.86117 1.44268 1.63770 1.22339 1.02889 1.19535 1.04377 1.28833 0.86814 0.91486 1.25779 0.94554 1.03071 1.00677 1.70170 1.08576 1.42574 1.36407 0.85200 0.77337 0.78377 0.79428 1.19292 1.21204 1.22228 1.21332 0.91661 0.88147 0.98231 1.21942 0.97085 0.96916 0.85907 0.92442 0.91422 0.93516 0.91823 0.91758 0.92380 0.92937 0.90751 0.91461 0.90956 0.91904 0.93430 0.91439 0.93042 0.87051 0.88089 0.91300 0.87535 0.98302 0.90644 0.93863 0.97598 0.91130 0.89811 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.13 71.98 0.59 -2.01 16 2 C -0.06 -0.97 0.54 -52.18 -0.03 -1.00 16 3 C -0.15 -2.19 7.43 71.98 0.53 -1.65 16 4 C -0.11 -1.69 4.73 30.60 0.14 -1.54 16 5 C -0.12 -1.80 5.65 30.60 0.17 -1.62 16 6 C -0.12 -2.26 5.92 30.60 0.18 -2.08 16 7 C -0.12 -2.71 4.67 30.60 0.14 -2.57 16 8 C -0.05 -1.17 1.14 -10.79 -0.01 -1.18 16 9 H 0.05 1.42 7.96 -2.39 -0.02 1.40 16 10 C -0.13 -3.25 2.79 29.85 0.08 -3.17 16 11 C 0.51 16.80 7.41 87.66 0.65 17.45 16 12 O -0.58 -22.46 13.37 -3.06 -0.04 -22.51 16 13 N -0.61 -21.27 2.94 -817.22 -2.40 -23.68 16 14 C 0.10 3.28 6.54 86.57 0.57 3.84 16 15 C 0.16 7.39 5.53 86.57 0.48 7.86 16 16 N -0.61 -29.95 2.97 -697.41 -2.07 -32.02 16 17 C -0.27 -14.18 9.58 84.03 0.80 -13.37 16 18 H 0.07 3.51 7.89 -2.91 -0.02 3.48 16 19 C -0.04 -2.42 4.90 84.86 0.42 -2.00 16 20 N -0.93 -52.84 11.20 21.65 0.24 -52.60 16 21 Si 0.97 43.26 29.59 68.60 2.03 45.29 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 25 C 0.13 5.66 6.67 86.40 0.58 6.24 16 26 C 0.11 3.90 6.59 86.40 0.57 4.47 16 27 H 0.06 1.04 6.32 -2.39 -0.02 1.03 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.93 4.80 -2.39 -0.01 0.92 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.86 6.54 -2.39 -0.02 0.85 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.01 6.43 -2.39 -0.02 0.99 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.38 6.43 -2.39 -0.02 1.37 16 40 H 0.05 1.52 5.96 -2.39 -0.01 1.51 16 41 H 0.11 2.29 6.47 -2.39 -0.02 2.27 16 42 H 0.10 2.40 5.76 -2.39 -0.01 2.38 16 43 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.11 2.87 5.91 -2.39 -0.01 2.85 16 45 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.08 3.79 5.99 -2.39 -0.01 3.78 16 47 H 0.25 13.80 8.31 -92.71 -0.77 13.02 16 48 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.07 2.87 7.94 -2.39 -0.02 2.85 16 50 H 0.08 3.04 6.99 -2.39 -0.02 3.03 16 51 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -63.49 367.01 4.52 -58.98 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.89 Total: 18.88 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.86 Total: 7.66 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -4.23 Total: -108.30 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.04 Total: -22.51 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -63.49 4.52 -58.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336425796.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.835 kcal (2) G-P(sol) polarization free energy of solvation -63.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.08 seconds