Wall clock time and date at job start Fri Apr 10 2020 22:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47310 * 2 1 4 4 C 1.52992 * 109.47157 * 120.00563 * 2 1 3 5 5 C 1.53005 * 109.46982 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47172 * 299.99949 * 5 4 2 7 7 C 1.52993 * 109.46887 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46827 * 174.99942 * 7 6 5 9 9 O 1.21275 * 120.00197 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99596 * 180.02562 * 8 7 6 11 11 C 1.46969 * 120.59184 * 179.97438 * 10 8 7 12 12 C 1.53365 * 108.63823 * 235.24762 * 11 10 8 13 13 N 1.46971 * 108.63406 * 310.57818 * 12 11 10 14 14 C 1.36933 * 120.58954 * 235.20080 * 13 12 11 15 15 H 1.08004 * 119.99676 * 151.84704 * 14 13 12 16 16 C 1.38804 * 120.00274 * 331.57456 * 14 13 12 17 17 N 1.31613 * 120.00257 * 342.82344 * 16 14 13 18 18 Si 1.86809 * 120.00042 * 162.81945 * 16 14 13 19 19 H 1.48504 * 109.46931 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46750 * 119.99895 * 18 16 14 21 21 H 1.48498 * 109.47076 * 239.99975 * 18 16 14 22 22 C 1.46964 * 118.81046 * 55.47559 * 13 12 11 23 23 C 1.46965 * 120.59893 * 0.02562 * 10 8 7 24 24 C 1.52995 * 109.47043 * 59.99767 * 6 5 4 25 25 C 1.52995 * 109.47348 * 300.00249 * 24 6 5 26 26 H 1.09004 * 109.46842 * 300.00031 * 1 2 3 27 27 H 1.09003 * 109.47122 * 59.99478 * 1 2 3 28 28 H 1.08990 * 109.47335 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47233 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47454 * 300.00319 * 3 2 1 31 31 H 1.09004 * 109.46796 * 60.00549 * 3 2 1 32 32 H 1.09002 * 109.47449 * 60.00045 * 4 2 1 33 33 H 1.09004 * 109.47256 * 299.99639 * 4 2 1 34 34 H 1.09003 * 109.46946 * 179.97438 * 5 4 2 35 35 H 1.08994 * 109.46947 * 60.00239 * 5 4 2 36 36 H 1.09003 * 109.46639 * 300.00002 * 6 5 4 37 37 H 1.09008 * 109.47542 * 55.00162 * 7 6 5 38 38 H 1.08996 * 109.47528 * 295.00190 * 7 6 5 39 39 H 1.09001 * 109.60759 * 115.50025 * 11 10 8 40 40 H 1.08998 * 109.74755 * 355.07824 * 11 10 8 41 41 H 1.08993 * 109.61301 * 190.83327 * 12 11 10 42 42 H 1.09004 * 109.75220 * 70.40370 * 12 11 10 43 43 H 0.97004 * 120.00510 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.60931 * 64.27031 * 22 13 12 45 45 H 1.09004 * 109.60392 * 184.78099 * 22 13 12 46 46 H 1.09002 * 109.60509 * 244.49992 * 23 10 8 47 47 H 1.09000 * 109.60856 * 4.83277 * 23 10 8 48 48 H 1.09007 * 109.46930 * 60.00172 * 24 6 5 49 49 H 1.09004 * 109.47174 * 179.97438 * 24 6 5 50 50 H 1.09000 * 109.47274 * 299.99551 * 25 24 6 51 51 H 1.09005 * 109.47452 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5701 -0.7219 1.2487 6 6 4.0795 -1.4434 -0.0006 7 6 5.6095 -1.4444 -0.0006 8 6 6.1112 -2.2597 -1.1646 9 8 5.3227 -2.7882 -1.9194 10 7 7.4362 -2.4023 -1.3660 11 6 7.9399 -3.1948 -2.4965 12 6 8.8850 -4.2747 -1.9556 13 7 9.8520 -3.6409 -1.0483 14 6 11.1981 -3.7866 -1.2525 15 1 11.8808 -3.0176 -0.9222 16 6 11.6859 -4.9251 -1.8790 17 7 10.9309 -5.9990 -1.9734 18 14 13.4141 -4.9332 -2.5883 19 1 14.0519 -3.6130 -2.3529 20 1 14.2154 -5.9944 -1.9272 21 1 13.3489 -5.1989 -4.0478 22 6 9.3483 -2.8531 0.0855 23 6 8.4032 -1.7690 -0.4584 24 6 3.5694 -0.7221 -1.2497 25 6 2.0395 -0.7215 -1.2493 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 -1.7490 1.2491 33 1 1.6767 -0.2076 2.1392 34 1 3.9334 -1.2354 2.1389 35 1 3.9337 0.3056 1.2486 36 1 3.7158 -2.4709 -0.0004 37 1 5.9726 -1.8791 0.9308 38 1 5.9736 -0.4210 -0.0900 39 1 8.4814 -2.5464 -3.1854 40 1 7.1058 -3.6657 -3.0167 41 1 9.4146 -4.7456 -2.7837 42 1 8.3125 -5.0268 -1.4126 43 1 11.2718 -6.7948 -2.4108 44 1 8.8061 -3.5041 0.7711 45 1 10.1841 -2.3848 0.6055 46 1 8.9778 -1.0188 -1.0018 47 1 7.8734 -1.2958 0.3683 48 1 3.9332 0.3055 -1.2498 49 1 3.9328 -1.2358 -2.1398 50 1 1.6758 -1.7490 -1.2492 51 1 1.6761 -0.2080 -2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336425891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:00 Heat of formation + Delta-G solvation = -56.167543 kcal Electronic energy + Delta-G solvation = -26812.553309 eV Core-core repulsion = 23324.519827 eV Total energy + Delta-G solvation = -3488.033482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36116 -40.14170 -38.40335 -35.62066 -35.17203 -33.06629 -32.18545 -31.61323 -30.11377 -28.55535 -28.12345 -26.07358 -25.17228 -24.23700 -23.59574 -22.28043 -21.34741 -19.93554 -19.32665 -18.64491 -17.69860 -16.82016 -16.71903 -16.49150 -16.14692 -15.63595 -15.48787 -15.29289 -15.03880 -15.01223 -14.81824 -14.67021 -14.33061 -13.84055 -13.62618 -13.38591 -13.17865 -13.08204 -12.74160 -12.71884 -12.64808 -12.61913 -12.46624 -12.27038 -12.20580 -12.13195 -12.01777 -11.85987 -11.75187 -11.65194 -11.60270 -11.03517 -10.96365 -10.79818 -10.62625 -10.43333 -9.75640 -8.66495 -7.89394 -5.38508 1.46336 1.48866 1.59041 1.73333 2.12423 2.50428 3.25520 3.59341 3.60926 3.72200 3.81994 3.91160 4.14287 4.22087 4.25209 4.28094 4.38246 4.44905 4.52874 4.53577 4.57402 4.60671 4.68342 4.70384 4.76108 4.80850 4.82381 4.88059 4.90082 4.91182 5.03125 5.06135 5.12622 5.15235 5.18064 5.25300 5.26719 5.29418 5.31313 5.36760 5.46557 5.52560 5.55776 5.60619 5.67152 5.70520 5.76403 6.34398 6.60625 7.08247 7.28922 7.78315 8.31690 9.15895 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.040796 B = 0.002662 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.180047 B =10516.758623 C =10736.422884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.065 4.065 7 C -0.127 4.127 8 C 0.502 3.498 9 O -0.587 6.587 10 N -0.606 5.606 11 C 0.103 3.897 12 C 0.171 3.829 13 N -0.610 5.610 14 C -0.260 4.260 15 H 0.077 0.923 16 C -0.053 4.053 17 N -0.938 5.938 18 Si 0.969 3.031 19 H -0.262 1.262 20 H -0.294 1.294 21 H -0.293 1.293 22 C 0.124 3.876 23 C 0.099 3.901 24 C -0.116 4.116 25 C -0.103 4.103 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.067 0.933 42 H -0.011 1.011 43 H 0.250 0.750 44 H 0.015 0.985 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.121 0.879 48 H 0.069 0.931 49 H 0.047 0.953 50 H 0.044 0.956 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.760 16.775 7.521 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.144 4.144 5 C -0.147 4.147 6 C -0.084 4.084 7 C -0.167 4.167 8 C 0.293 3.707 9 O -0.468 6.468 10 N -0.339 5.339 11 C -0.022 4.022 12 C 0.044 3.956 13 N -0.334 5.334 14 C -0.390 4.390 15 H 0.094 0.906 16 C -0.249 4.249 17 N -0.584 5.584 18 Si 0.797 3.203 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.220 1.220 22 C -0.002 4.002 23 C -0.024 4.024 24 C -0.154 4.154 25 C -0.141 4.141 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.007 0.993 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.138 0.862 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.100 16.378 7.082 24.714 hybrid contribution 1.047 -1.145 -0.836 1.762 sum -16.053 15.233 6.246 22.994 Atomic orbital electron populations 1.21856 0.94376 1.01493 1.02025 1.20542 0.95385 0.95889 0.94636 1.21944 1.01592 0.94567 1.01764 1.21569 0.95347 0.99999 0.97437 1.21613 0.95677 1.01264 0.96185 1.20846 0.92150 0.99360 0.96077 1.21829 0.97414 1.01364 0.96063 1.21514 0.81127 0.80939 0.87118 1.90603 1.55436 1.51051 1.49744 1.48216 1.06070 1.50732 1.28836 1.22006 0.97088 0.94246 0.88826 1.20848 0.89324 0.91364 0.94036 1.44288 1.02148 1.59398 1.27518 1.19609 0.83694 1.00452 1.35248 0.90567 1.25883 1.01562 0.94404 1.03018 1.70192 1.38777 1.02361 1.47118 0.85182 0.79853 0.77829 0.77410 1.18552 1.22135 1.21951 1.21591 0.96657 0.92638 0.89313 1.22455 0.91013 0.95173 0.93779 1.21652 0.95786 1.00103 0.97818 1.21530 0.95237 0.99577 0.97742 0.91774 0.92728 0.93301 0.91910 0.93067 0.91910 0.93092 0.90638 0.91140 0.90117 0.93352 0.87289 0.86475 0.92015 0.91105 0.91517 0.99253 0.94099 0.96663 0.90111 0.90853 0.86158 0.91251 0.93448 0.93712 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.47 71.98 0.61 -1.33 16 2 C -0.06 -1.00 0.77 -52.18 -0.04 -1.04 16 3 C -0.14 -1.87 7.78 71.98 0.56 -1.31 16 4 C -0.11 -1.59 4.73 30.59 0.14 -1.45 16 5 C -0.11 -1.67 4.93 30.60 0.15 -1.52 16 6 C -0.07 -1.41 1.84 -10.80 -0.02 -1.43 16 7 C -0.13 -2.75 3.52 29.85 0.10 -2.65 16 8 C 0.50 16.46 7.41 87.66 0.65 17.11 16 9 O -0.59 -23.61 13.38 -3.02 -0.04 -23.65 16 10 N -0.61 -21.08 2.95 -817.25 -2.41 -23.49 16 11 C 0.10 4.26 6.59 86.41 0.57 4.83 16 12 C 0.17 8.52 5.51 86.41 0.48 9.00 16 13 N -0.61 -29.83 2.96 -697.46 -2.06 -31.90 16 14 C -0.26 -13.79 9.57 84.03 0.80 -12.99 16 15 H 0.08 3.84 7.89 -2.91 -0.02 3.82 16 16 C -0.05 -2.94 4.91 84.86 0.42 -2.53 16 17 N -0.94 -55.73 11.20 21.65 0.24 -55.48 16 18 Si 0.97 44.11 29.59 68.60 2.03 46.14 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 C 0.12 4.66 6.70 86.55 0.58 5.24 16 23 C 0.10 2.87 6.52 86.55 0.56 3.43 16 24 C -0.12 -2.65 4.67 30.59 0.14 -2.51 16 25 C -0.10 -2.09 4.73 30.59 0.14 -1.95 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.83 4.81 -2.39 -0.01 0.82 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.01 6.43 -2.39 -0.02 1.00 16 36 H 0.05 1.32 7.95 -2.39 -0.02 1.30 16 37 H 0.11 2.01 7.72 -2.38 -0.02 2.00 16 38 H 0.12 1.91 7.91 -2.39 -0.02 1.89 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.07 3.03 7.00 -2.39 -0.02 3.01 16 41 H 0.07 3.73 6.00 -2.39 -0.01 3.71 16 42 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.12 2.36 5.91 -2.39 -0.01 2.35 16 48 H 0.07 1.37 6.43 -2.38 -0.02 1.36 16 49 H 0.05 1.43 5.95 -2.39 -0.01 1.42 16 50 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -68.02 374.28 4.50 -63.53 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.88 Total: 15.93 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.86 Total: 8.92 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.23 Total: -110.87 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.04 Total: -23.65 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.02 4.50 -63.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336425891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.360 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds