Wall clock time and date at job start Fri Apr 10 2020 22:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34771 * 120.00453 * 2 1 4 4 O 1.21277 * 120.00260 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99720 * 359.97438 * 3 2 1 6 6 C 1.53786 * 113.61325 * 277.49882 * 5 3 2 7 7 C 1.53775 * 87.07951 * 220.01765 * 6 5 3 8 8 C 1.53001 * 113.61850 * 270.88142 * 7 6 5 9 9 C 1.53001 * 113.68951 * 139.99487 * 7 6 5 10 10 C 1.53775 * 87.08436 * 25.43563 * 7 6 5 11 11 C 1.46500 * 119.99779 * 179.97438 * 2 1 3 12 12 H 1.08999 * 108.32094 * 182.38566 * 11 2 1 13 13 C 1.52575 * 108.51460 * 64.76270 * 11 2 1 14 14 C 1.50880 * 109.35910 * 153.73442 * 13 11 2 15 15 C 1.53945 * 110.09746 * 91.88882 * 14 13 11 16 16 N 1.47583 * 112.12116 * 319.44914 * 15 14 13 17 17 C 1.36936 * 118.62322 * 137.86945 * 16 15 14 18 18 H 1.07998 * 119.99825 * 206.49894 * 17 16 15 19 19 C 1.38816 * 120.00147 * 26.50043 * 17 16 15 20 20 N 1.31620 * 120.00010 * 15.71271 * 19 17 16 21 21 Si 1.86801 * 120.00173 * 195.70570 * 19 17 16 22 22 H 1.48503 * 109.46821 * 60.00367 * 21 19 17 23 23 H 1.48503 * 109.47046 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47266 * 300.00250 * 21 19 17 25 25 C 1.44576 * 122.73176 * 317.82085 * 16 15 14 26 26 C 1.47102 * 108.51222 * 300.00139 * 11 2 1 27 27 H 1.09006 * 109.47337 * 270.00569 * 1 2 3 28 28 H 1.09006 * 109.47215 * 30.00394 * 1 2 3 29 29 H 1.09003 * 109.47276 * 150.00340 * 1 2 3 30 30 H 1.08997 * 112.84882 * 48.80376 * 5 3 2 31 31 H 1.08994 * 113.61792 * 334.56908 * 6 5 3 32 32 H 1.09005 * 113.61376 * 105.47205 * 6 5 3 33 33 H 1.08998 * 109.47163 * 157.49529 * 8 7 6 34 34 H 1.09000 * 109.47333 * 277.49716 * 8 7 6 35 35 H 1.09006 * 109.46817 * 37.50081 * 8 7 6 36 36 H 1.09006 * 109.47066 * 322.46532 * 9 7 6 37 37 H 1.08998 * 109.47312 * 82.46347 * 9 7 6 38 38 H 1.08999 * 109.47290 * 202.47001 * 9 7 6 39 39 H 1.08998 * 113.61538 * 220.02012 * 10 7 6 40 40 H 1.08995 * 113.61506 * 89.11112 * 10 7 6 41 41 H 1.08992 * 109.48913 * 273.70146 * 13 11 2 42 42 H 1.08998 * 109.48133 * 33.75044 * 13 11 2 43 43 H 1.08996 * 109.36492 * 212.08178 * 14 13 11 44 44 H 1.09006 * 109.36803 * 331.69706 * 14 13 11 45 45 H 1.09004 * 108.94577 * 80.11743 * 15 14 13 46 46 H 1.08990 * 108.94968 * 198.74711 * 15 14 13 47 47 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.44592 * 330.73919 * 25 16 15 49 49 H 1.09000 * 109.45128 * 210.79041 * 25 16 15 50 50 H 1.09002 * 109.32747 * 63.79704 * 26 11 2 51 51 H 1.08993 * 109.32651 * 304.31756 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 0.9188 2.9135 -1.3979 7 6 1.3048 4.3446 -0.9887 8 6 0.1709 5.1147 -0.3087 9 6 1.9782 5.1432 -2.1066 10 6 2.2977 3.7102 -0.0007 11 6 2.1974 -1.2688 0.0006 12 1 3.2641 -1.0486 0.0435 13 6 1.9054 -1.9973 -1.3078 14 6 3.0581 -2.9131 -1.6383 15 6 2.8028 -4.3157 -1.0572 16 7 2.2083 -4.2583 0.2924 17 6 1.1925 -5.1239 0.5990 18 1 0.4677 -4.8598 1.3549 19 6 1.0944 -6.3409 -0.0616 20 7 2.1202 -6.8037 -0.7441 21 14 -0.4934 -7.3217 0.0183 22 1 -1.6029 -6.5146 -0.5500 23 1 -0.3415 -8.5742 -0.7650 24 1 -0.7983 -7.6557 1.4327 25 6 2.6544 -3.3270 1.3042 26 6 1.8269 -2.0214 1.2089 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.6006 2.5082 0.7549 31 1 1.5269 2.5120 -2.2084 32 1 -0.1503 2.7800 -1.5635 33 1 0.5895 5.9204 0.2943 34 1 -0.4896 5.5342 -1.0676 35 1 -0.3949 4.4379 0.3316 36 1 2.6321 4.4856 -2.6797 37 1 1.2162 5.5610 -2.7645 38 1 2.5663 5.9516 -1.6722 39 1 2.3420 4.2200 0.9618 40 1 3.2829 3.5266 -0.4292 41 1 0.9934 -2.5845 -1.2013 42 1 1.7779 -1.2691 -2.1087 43 1 3.1643 -2.9842 -2.7207 44 1 3.9759 -2.5072 -1.2128 45 1 2.1258 -4.8553 -1.7195 46 1 3.7486 -4.8547 -1.0051 47 1 2.0518 -7.6543 -1.2054 48 1 3.7092 -3.1003 1.1489 49 1 2.5199 -3.7708 2.2906 50 1 0.7661 -2.2688 1.1687 51 1 2.0185 -1.4078 2.0890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948349692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:09:46 Heat of formation + Delta-G solvation = -2.126868 kcal Electronic energy + Delta-G solvation = -27223.844455 eV Core-core repulsion = 23738.154353 eV Total energy + Delta-G solvation = -3485.690102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.81852 -39.01750 -37.32094 -35.27918 -32.92502 -31.66221 -31.17311 -30.05869 -27.70728 -26.80324 -26.12436 -25.91595 -24.71693 -23.67270 -22.69024 -19.78161 -19.22131 -18.80555 -18.44746 -17.12399 -16.68636 -15.98171 -15.45826 -15.12047 -14.89749 -14.41028 -14.25650 -13.90535 -13.67399 -13.46669 -13.25276 -13.14081 -12.90539 -12.75096 -12.67718 -12.42408 -12.23396 -12.03455 -11.87093 -11.78140 -11.37473 -11.26412 -11.18850 -11.01254 -10.81756 -10.59308 -10.54381 -10.43117 -10.31208 -10.13922 -10.11797 -9.79159 -9.72480 -9.58023 -9.31557 -8.40758 -8.34182 -6.64456 -5.76212 -3.20024 2.78217 3.23168 3.37665 3.43883 3.44204 4.19474 4.33032 4.44080 4.50728 4.55127 4.81311 4.99297 5.19433 5.23780 5.29247 5.36108 5.37458 5.38336 5.46875 5.51035 5.55819 5.57252 5.62094 5.66937 5.69992 5.75037 5.78796 5.83745 5.89038 5.93616 6.06122 6.07290 6.13845 6.25146 6.29937 6.38017 6.51493 6.58805 6.69234 6.80843 6.85488 6.89459 6.99362 7.03461 7.47314 7.66420 7.73960 7.83991 8.39807 8.49044 9.26143 9.93208 10.38817 11.31040 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.003145 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.574718 B = 8902.081914 C = 9177.073494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.610 5.610 3 C 0.519 3.481 4 O -0.547 6.547 5 C -0.135 4.135 6 C -0.113 4.113 7 C -0.091 4.091 8 C -0.128 4.128 9 C -0.135 4.135 10 C -0.108 4.108 11 C 0.153 3.847 12 H 0.086 0.914 13 C -0.108 4.108 14 C -0.141 4.141 15 C 0.179 3.821 16 N -0.590 5.590 17 C -0.258 4.258 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.900 3.100 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.163 3.837 26 C -0.152 4.152 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.024 0.976 47 H 0.253 0.747 48 H 0.034 0.966 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 21.464 -1.118 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.342 5.342 3 C 0.307 3.693 4 O -0.425 6.425 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.091 4.091 8 C -0.185 4.185 9 C -0.192 4.192 10 C -0.146 4.146 11 C 0.052 3.948 12 H 0.104 0.896 13 C -0.146 4.146 14 C -0.180 4.180 15 C 0.054 3.946 16 N -0.311 5.311 17 C -0.388 4.388 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.034 3.966 26 C -0.193 4.193 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.042 0.958 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.664 21.272 -1.223 21.620 hybrid contribution -1.049 -0.667 0.057 1.244 sum -4.713 20.605 -1.166 21.169 Atomic orbital electron populations 1.21740 0.80200 1.03032 1.01588 1.48310 1.06923 1.06456 1.72503 1.20472 0.87882 0.85153 0.75814 1.90652 1.14041 1.87275 1.50490 1.22708 1.00053 0.92829 1.00080 1.23007 1.01426 0.95356 0.95274 1.21795 0.96518 0.94236 0.96547 1.21603 0.96996 0.99761 1.00155 1.21717 1.00166 0.99888 0.97434 1.22951 0.98321 0.93808 0.99487 1.20158 0.97183 0.81479 0.95988 0.89601 1.21253 1.00905 0.97573 0.94880 1.21986 0.97049 0.99175 0.99839 1.21007 0.97807 0.90029 0.85770 1.43656 1.40954 1.38650 1.07824 1.19146 1.03005 0.95702 1.20959 0.91835 1.25029 0.97134 0.96257 1.00972 1.70064 1.28178 1.19875 1.36669 0.86413 0.83659 0.79317 0.77613 1.21123 1.21698 1.20953 1.20566 0.94566 0.88516 0.92997 1.21840 1.02687 0.99153 0.95609 0.92898 0.91541 0.90529 0.87367 0.89628 0.90800 0.92279 0.92354 0.92379 0.92392 0.92670 0.92493 0.91246 0.88672 0.90537 0.93627 0.92785 0.93469 0.90782 0.95760 0.93643 0.94809 0.93270 0.91787 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 9.06 59.85 0.54 1.44 16 2 N -0.61 -9.01 2.59 -177.47 -0.46 -9.47 16 3 C 0.52 7.80 7.20 -10.99 -0.08 7.72 16 4 O -0.55 -10.29 15.19 5.56 0.08 -10.21 16 5 C -0.14 -1.46 2.44 -90.95 -0.22 -1.68 16 6 C -0.11 -1.04 6.03 -25.92 -0.16 -1.20 16 7 C -0.09 -0.75 1.39 -153.70 -0.21 -0.96 16 8 C -0.13 -0.86 9.07 37.16 0.34 -0.52 16 9 C -0.13 -1.04 9.19 37.16 0.34 -0.70 16 10 C -0.11 -1.11 6.56 -25.92 -0.17 -1.28 16 11 C 0.15 2.68 1.96 -70.98 -0.14 2.54 16 12 H 0.09 1.69 6.03 -51.93 -0.31 1.38 16 13 C -0.11 -1.94 4.34 -28.01 -0.12 -2.07 16 14 C -0.14 -2.75 5.71 -27.30 -0.16 -2.91 16 15 C 0.18 4.25 4.67 -2.96 -0.01 4.24 16 16 N -0.59 -14.36 2.27 -172.11 -0.39 -14.75 16 17 C -0.26 -6.88 9.44 -15.06 -0.14 -7.02 16 18 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 19 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 20 N -0.90 -25.93 11.01 55.49 0.61 -25.32 16 21 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.16 3.42 5.66 -4.08 -0.02 3.40 16 26 C -0.15 -2.74 4.88 -28.58 -0.14 -2.88 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.61 5.79 -51.93 -0.30 0.31 16 29 H 0.08 0.95 7.25 -51.93 -0.38 0.57 16 30 H 0.11 1.00 7.36 -51.93 -0.38 0.61 16 31 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16 32 H 0.07 0.58 7.64 -51.93 -0.40 0.18 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.38 7.34 -51.93 -0.38 -0.01 16 36 H 0.06 0.49 7.95 -51.93 -0.41 0.07 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.09 1.17 7.39 -51.93 -0.38 0.78 16 41 H 0.08 1.52 7.23 -51.93 -0.38 1.14 16 42 H 0.05 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.91 7.32 -51.93 -0.38 0.53 16 45 H 0.07 1.95 6.33 -51.93 -0.33 1.62 16 46 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 49 H 0.05 1.05 7.99 -51.93 -0.41 0.63 16 50 H 0.06 1.20 7.62 -51.93 -0.40 0.80 16 51 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -30.19 381.00 -9.32 -39.51 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -9.43 Total: -0.02 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.44 Total: -1.84 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.24 Total: -49.54 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.19 -9.32 -39.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948349692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.380 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds