Wall clock time and date at job start Fri Apr 10 2020 22:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34771 * 120.00453 * 2 1 4 4 O 1.21277 * 120.00260 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99720 * 359.97438 * 3 2 1 6 6 C 1.53786 * 113.61325 * 277.49882 * 5 3 2 7 7 C 1.53775 * 87.07951 * 220.01765 * 6 5 3 8 8 C 1.53001 * 113.61850 * 270.88142 * 7 6 5 9 9 C 1.53001 * 113.68951 * 139.99487 * 7 6 5 10 10 C 1.53775 * 87.08436 * 25.43563 * 7 6 5 11 11 C 1.46500 * 119.99779 * 179.97438 * 2 1 3 12 12 H 1.08999 * 108.32094 * 182.38566 * 11 2 1 13 13 C 1.52575 * 108.51460 * 64.76270 * 11 2 1 14 14 C 1.50880 * 109.35910 * 153.73442 * 13 11 2 15 15 C 1.53945 * 110.09746 * 91.88882 * 14 13 11 16 16 N 1.47583 * 112.12116 * 319.44914 * 15 14 13 17 17 C 1.36936 * 118.62322 * 137.86945 * 16 15 14 18 18 H 1.07998 * 119.99825 * 206.49894 * 17 16 15 19 19 C 1.38816 * 120.00147 * 26.50043 * 17 16 15 20 20 N 1.31620 * 120.00010 * 15.71271 * 19 17 16 21 21 Si 1.86801 * 120.00173 * 195.70570 * 19 17 16 22 22 H 1.48503 * 109.46821 * 60.00367 * 21 19 17 23 23 H 1.48503 * 109.47046 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47266 * 300.00250 * 21 19 17 25 25 C 1.44576 * 122.73176 * 317.82085 * 16 15 14 26 26 C 1.47102 * 108.51222 * 300.00139 * 11 2 1 27 27 H 1.09006 * 109.47337 * 270.00569 * 1 2 3 28 28 H 1.09006 * 109.47215 * 30.00394 * 1 2 3 29 29 H 1.09003 * 109.47276 * 150.00340 * 1 2 3 30 30 H 1.08997 * 112.84882 * 48.80376 * 5 3 2 31 31 H 1.08994 * 113.61792 * 334.56908 * 6 5 3 32 32 H 1.09005 * 113.61376 * 105.47205 * 6 5 3 33 33 H 1.08998 * 109.47163 * 157.49529 * 8 7 6 34 34 H 1.09000 * 109.47333 * 277.49716 * 8 7 6 35 35 H 1.09006 * 109.46817 * 37.50081 * 8 7 6 36 36 H 1.09006 * 109.47066 * 322.46532 * 9 7 6 37 37 H 1.08998 * 109.47312 * 82.46347 * 9 7 6 38 38 H 1.08999 * 109.47290 * 202.47001 * 9 7 6 39 39 H 1.08998 * 113.61538 * 220.02012 * 10 7 6 40 40 H 1.08995 * 113.61506 * 89.11112 * 10 7 6 41 41 H 1.08992 * 109.48913 * 273.70146 * 13 11 2 42 42 H 1.08998 * 109.48133 * 33.75044 * 13 11 2 43 43 H 1.08996 * 109.36492 * 212.08178 * 14 13 11 44 44 H 1.09006 * 109.36803 * 331.69706 * 14 13 11 45 45 H 1.09004 * 108.94577 * 80.11743 * 15 14 13 46 46 H 1.08990 * 108.94968 * 198.74711 * 15 14 13 47 47 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.44592 * 330.73919 * 25 16 15 49 49 H 1.09000 * 109.45128 * 210.79041 * 25 16 15 50 50 H 1.09002 * 109.32747 * 63.79704 * 26 11 2 51 51 H 1.08993 * 109.32651 * 304.31756 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 0.9188 2.9135 -1.3979 7 6 1.3048 4.3446 -0.9887 8 6 0.1709 5.1147 -0.3087 9 6 1.9782 5.1432 -2.1066 10 6 2.2977 3.7102 -0.0007 11 6 2.1974 -1.2688 0.0006 12 1 3.2641 -1.0486 0.0435 13 6 1.9054 -1.9973 -1.3078 14 6 3.0581 -2.9131 -1.6383 15 6 2.8028 -4.3157 -1.0572 16 7 2.2083 -4.2583 0.2924 17 6 1.1925 -5.1239 0.5990 18 1 0.4677 -4.8598 1.3549 19 6 1.0944 -6.3409 -0.0616 20 7 2.1202 -6.8037 -0.7441 21 14 -0.4934 -7.3217 0.0183 22 1 -1.6029 -6.5146 -0.5500 23 1 -0.3415 -8.5742 -0.7650 24 1 -0.7983 -7.6557 1.4327 25 6 2.6544 -3.3270 1.3042 26 6 1.8269 -2.0214 1.2089 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.6006 2.5082 0.7549 31 1 1.5269 2.5120 -2.2084 32 1 -0.1503 2.7800 -1.5635 33 1 0.5895 5.9204 0.2943 34 1 -0.4896 5.5342 -1.0676 35 1 -0.3949 4.4379 0.3316 36 1 2.6321 4.4856 -2.6797 37 1 1.2162 5.5610 -2.7645 38 1 2.5663 5.9516 -1.6722 39 1 2.3420 4.2200 0.9618 40 1 3.2829 3.5266 -0.4292 41 1 0.9934 -2.5845 -1.2013 42 1 1.7779 -1.2691 -2.1087 43 1 3.1643 -2.9842 -2.7207 44 1 3.9759 -2.5072 -1.2128 45 1 2.1258 -4.8553 -1.7195 46 1 3.7486 -4.8547 -1.0051 47 1 2.0518 -7.6543 -1.2054 48 1 3.7092 -3.1003 1.1489 49 1 2.5199 -3.7708 2.2906 50 1 0.7661 -2.2688 1.1687 51 1 2.0185 -1.4078 2.0890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948349692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:09:44 Heat of formation + Delta-G solvation = -17.133980 kcal Electronic energy + Delta-G solvation = -27224.495213 eV Core-core repulsion = 23738.154353 eV Total energy + Delta-G solvation = -3486.340860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83852 -40.19033 -38.72823 -36.78036 -34.58061 -33.35985 -32.44041 -31.35755 -28.23477 -28.10703 -27.65133 -26.70509 -26.13390 -25.36265 -24.08037 -21.23325 -20.99327 -19.96381 -19.17119 -18.56043 -18.20168 -17.29280 -16.95489 -16.45528 -15.89845 -15.83071 -15.49573 -15.27368 -15.08714 -14.87984 -14.41101 -14.18420 -14.02125 -13.88264 -13.70487 -13.62217 -13.60898 -13.17629 -13.06399 -12.93570 -12.67366 -12.66177 -12.42870 -12.40109 -12.14304 -11.99923 -11.95482 -11.79971 -11.72280 -11.57272 -11.40725 -11.38644 -11.23324 -10.99902 -10.54049 -10.40442 -9.60777 -8.65470 -7.83213 -5.30082 1.48810 1.50377 1.57166 1.64565 2.07251 2.53729 3.30658 3.46787 3.52822 3.63445 3.67364 3.75677 3.79689 4.07802 4.10391 4.22497 4.35440 4.41407 4.41772 4.43679 4.53270 4.65631 4.68519 4.72346 4.73557 4.78766 4.85680 4.89533 4.90990 4.96067 4.98579 5.01437 5.06850 5.11271 5.12649 5.20319 5.23135 5.24518 5.26230 5.30949 5.45698 5.48858 5.55776 5.61085 5.67541 5.68738 5.79912 6.42478 6.51197 7.19950 7.23403 7.94918 8.36217 9.22323 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.003145 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.574718 B = 8902.081914 C = 9177.073494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.513 3.487 4 O -0.592 6.592 5 C -0.130 4.130 6 C -0.110 4.110 7 C -0.080 4.080 8 C -0.126 4.126 9 C -0.136 4.136 10 C -0.115 4.115 11 C 0.159 3.841 12 H 0.063 0.937 13 C -0.095 4.095 14 C -0.130 4.130 15 C 0.192 3.808 16 N -0.601 5.601 17 C -0.262 4.262 18 H 0.069 0.931 19 C -0.049 4.049 20 N -0.938 5.938 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.277 1.277 25 C 0.158 3.842 26 C -0.132 4.132 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.046 0.954 46 H -0.009 1.009 47 H 0.248 0.752 48 H 0.031 0.969 49 H 0.045 0.955 50 H 0.063 0.937 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 23.868 -0.791 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.303 3.697 4 O -0.473 6.473 5 C -0.150 4.150 6 C -0.147 4.147 7 C -0.080 4.080 8 C -0.183 4.183 9 C -0.193 4.193 10 C -0.153 4.153 11 C 0.056 3.944 12 H 0.081 0.919 13 C -0.134 4.134 14 C -0.169 4.169 15 C 0.066 3.934 16 N -0.323 5.323 17 C -0.392 4.392 18 H 0.086 0.914 19 C -0.244 4.244 20 N -0.584 5.584 21 Si 0.793 3.207 22 H -0.201 1.201 23 H -0.225 1.225 24 H -0.203 1.203 25 C 0.030 3.970 26 C -0.172 4.172 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.009 0.991 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.335 23.716 -0.875 24.563 hybrid contribution -0.145 -1.393 -0.004 1.401 sum -6.480 22.323 -0.880 23.261 Atomic orbital electron populations 1.21969 0.77838 1.04174 1.02896 1.48310 1.08286 1.05322 1.72178 1.21275 0.87593 0.86335 0.74519 1.90635 1.16282 1.87946 1.52486 1.22820 1.00272 0.90050 1.01899 1.23009 1.02435 0.95673 0.93610 1.21769 0.96294 0.93985 0.95910 1.21615 0.96378 0.99825 1.00499 1.21726 1.00403 0.99732 0.97463 1.22957 0.97571 0.94292 1.00458 1.19822 0.96389 0.82813 0.95330 0.91873 1.21107 0.99184 0.97251 0.95813 1.21841 0.97815 0.96793 1.00495 1.20735 0.95216 0.91905 0.85497 1.43835 1.40815 1.39036 1.08641 1.19466 1.03335 0.95886 1.20536 0.91375 1.25781 0.99943 0.97460 1.01242 1.70237 1.30066 1.20107 1.37969 0.85385 0.80175 0.77543 0.77594 1.20119 1.22452 1.20277 1.20689 0.95042 0.89302 0.91927 1.21562 1.01677 0.97449 0.96551 0.91478 0.88538 0.91312 0.84801 0.91349 0.88472 0.91841 0.91252 0.91607 0.93719 0.91334 0.92116 0.90439 0.91386 0.92029 0.92048 0.91220 0.93430 0.93588 0.99121 0.94274 0.95037 0.93709 0.91877 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 9.06 127.77 1.16 2.62 16 2 N -0.61 -16.90 2.59 -833.78 -2.16 -19.06 16 3 C 0.51 14.73 7.20 87.66 0.63 15.37 16 4 O -0.59 -22.44 15.19 -3.02 -0.05 -22.48 16 5 C -0.13 -2.45 2.44 -11.01 -0.03 -2.48 16 6 C -0.11 -1.71 6.03 31.12 0.19 -1.52 16 7 C -0.08 -1.10 1.39 -51.66 -0.07 -1.17 16 8 C -0.13 -1.21 9.07 71.98 0.65 -0.55 16 9 C -0.14 -1.85 9.19 71.98 0.66 -1.19 16 10 C -0.11 -2.19 6.56 31.12 0.20 -1.99 16 11 C 0.16 5.45 1.96 43.02 0.08 5.53 16 12 H 0.06 2.49 6.03 -2.39 -0.01 2.48 16 13 C -0.10 -3.37 4.34 29.76 0.13 -3.24 16 14 C -0.13 -5.12 5.71 30.22 0.17 -4.95 16 15 C 0.19 9.42 4.67 86.49 0.40 9.83 16 16 N -0.60 -29.79 2.27 -698.43 -1.58 -31.38 16 17 C -0.26 -14.04 9.44 84.03 0.79 -13.24 16 18 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 19 C -0.05 -2.71 4.87 84.86 0.41 -2.29 16 20 N -0.94 -55.40 11.01 21.65 0.24 -55.16 16 21 Si 0.96 44.21 29.58 68.60 2.03 46.24 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 C 0.16 6.70 5.66 87.38 0.49 7.20 16 26 C -0.13 -4.63 4.88 29.40 0.14 -4.48 16 27 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.10 1.34 5.79 -2.38 -0.01 1.33 16 29 H 0.07 1.52 7.25 -2.39 -0.02 1.50 16 30 H 0.13 1.89 7.36 -2.39 -0.02 1.87 16 31 H 0.07 1.33 7.92 -2.39 -0.02 1.31 16 32 H 0.10 1.08 7.64 -2.38 -0.02 1.07 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.55 7.34 -2.38 -0.02 0.53 16 36 H 0.04 0.72 7.95 -2.38 -0.02 0.70 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.07 1.68 7.39 -2.39 -0.02 1.67 16 41 H 0.06 2.40 7.23 -2.39 -0.02 2.38 16 42 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 44 H 0.05 1.87 7.32 -2.38 -0.02 1.85 16 45 H 0.05 2.50 6.33 -2.38 -0.02 2.49 16 46 H -0.01 -0.51 8.03 -2.39 -0.02 -0.53 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 49 H 0.04 1.91 7.99 -2.39 -0.02 1.89 16 50 H 0.06 2.25 7.62 -2.39 -0.02 2.24 16 51 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -67.36 381.00 5.39 -61.98 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.87 Total: 16.43 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 6.03 Total: 3.43 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -3.50 Total: -105.59 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.36 5.39 -61.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948349692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.842 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds