Wall clock time and date at job start Fri Apr 10 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46760 * 2 1 4 4 C 1.52995 * 109.47581 * 239.99524 * 2 1 3 5 5 C 1.53001 * 109.46975 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46958 * 60.00495 * 5 4 2 7 7 C 1.52995 * 109.46874 * 299.99567 * 6 5 4 8 8 H 1.09000 * 109.47295 * 299.99889 * 7 6 5 9 9 C 1.53003 * 109.46874 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.46982 * 65.00172 * 9 7 6 11 11 O 1.21284 * 120.00045 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99817 * 179.97438 * 10 9 7 13 13 C 1.47429 * 125.65124 * 359.97438 * 12 10 9 14 14 C 1.54905 * 104.83123 * 155.90522 * 13 12 10 15 15 C 1.55150 * 101.58463 * 37.00890 * 14 13 12 16 16 H 1.09004 * 110.72164 * 83.04110 * 15 14 13 17 17 N 1.46506 * 110.72358 * 206.13221 * 15 14 13 18 18 C 1.36931 * 119.99939 * 273.54912 * 17 15 14 19 19 H 1.08000 * 120.00644 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99715 * 179.97438 * 18 17 15 21 21 N 1.31611 * 120.00107 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 179.72150 * 20 18 17 23 23 H 1.48497 * 109.47323 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46790 * 120.00304 * 22 20 18 25 25 H 1.48501 * 109.47364 * 240.00332 * 22 20 18 26 26 C 1.47026 * 125.64563 * 180.02562 * 12 10 9 27 27 C 1.52996 * 109.46820 * 119.99217 * 2 1 3 28 28 H 1.08993 * 109.47543 * 300.00291 * 1 2 3 29 29 H 1.09000 * 109.47149 * 60.00466 * 1 2 3 30 30 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46759 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46856 * 299.99180 * 3 2 1 33 33 H 1.09000 * 109.47182 * 59.99918 * 3 2 1 34 34 H 1.09000 * 109.47295 * 300.00320 * 4 2 1 35 35 H 1.09003 * 109.46717 * 60.00359 * 4 2 1 36 36 H 1.09002 * 109.46390 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.47494 * 299.99839 * 5 4 2 38 38 H 1.08998 * 109.47079 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.47069 * 59.99595 * 6 5 4 40 40 H 1.08991 * 109.47467 * 305.00007 * 9 7 6 41 41 H 1.09004 * 109.46862 * 184.99760 * 9 7 6 42 42 H 1.08996 * 110.36304 * 37.06654 * 13 12 10 43 43 H 1.08997 * 110.45931 * 274.79174 * 13 12 10 44 44 H 1.09007 * 111.00765 * 278.93116 * 14 13 12 45 45 H 1.09000 * 111.00375 * 155.08978 * 14 13 12 46 46 H 0.97000 * 119.99307 * 93.54706 * 17 15 14 47 47 H 0.97000 * 120.00330 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.88218 * 61.61379 * 26 12 10 49 49 H 1.08991 * 109.88449 * 300.44249 * 26 12 10 50 50 H 1.09003 * 109.47353 * 60.00814 * 27 2 1 51 51 H 1.09000 * 109.47815 * 300.00506 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2493 6 6 4.0805 -1.4415 0.0000 7 6 3.5704 -0.7202 1.2491 8 1 3.9334 0.3076 1.2489 9 6 4.0803 -1.4415 2.4985 10 6 5.5822 -1.3351 2.5620 11 8 6.1855 -0.7413 1.6934 12 7 6.2551 -1.8998 3.5842 13 6 5.6507 -2.6468 4.7023 14 6 6.7800 -3.5746 5.2158 15 6 8.0270 -2.6656 5.0553 16 1 8.1289 -1.9962 5.9095 17 7 9.2380 -3.4723 4.8842 18 6 9.9224 -3.9211 5.9821 19 1 9.5698 -3.6801 6.9740 20 6 11.0694 -4.6859 5.8200 21 7 11.4994 -4.9792 4.6112 22 14 12.0075 -5.2916 7.3176 23 1 11.3257 -4.8241 8.5512 24 1 12.0496 -6.7760 7.3081 25 1 13.3924 -4.7568 7.2839 26 6 7.7134 -1.8720 3.7694 27 6 2.0399 -0.7211 1.2493 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7490 -1.2491 35 1 1.6768 -0.2075 -2.1391 36 1 3.9334 -1.2342 -2.1395 37 1 3.9331 0.3071 -1.2496 38 1 5.1705 -1.4415 -0.0003 39 1 3.7176 -2.4693 0.0002 40 1 3.7920 -2.4917 2.4549 41 1 3.6456 -0.9819 3.3861 42 1 4.8049 -3.2375 4.3506 43 1 5.3337 -1.9633 5.4900 44 1 6.8646 -4.4671 4.5957 45 1 6.6222 -3.8405 6.2610 46 1 9.5548 -3.6884 3.9933 47 1 12.3012 -5.5133 4.4978 48 1 8.0538 -0.8422 3.8770 49 1 8.2044 -2.3398 2.9162 50 1 1.6767 -1.7488 1.2494 51 1 1.6766 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970483999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:46 Heat of formation + Delta-G solvation = -55.582140 kcal Electronic energy + Delta-G solvation = -26194.708768 eV Core-core repulsion = 22706.700671 eV Total energy + Delta-G solvation = -3488.008097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.35634 -39.25826 -37.28955 -34.13072 -33.98481 -32.15805 -31.44247 -29.53079 -28.50088 -27.56931 -26.83168 -26.38840 -23.71114 -22.80077 -22.08704 -20.90031 -19.99829 -18.96410 -18.51215 -17.39004 -16.82695 -15.95074 -15.52514 -15.37620 -14.89135 -14.68832 -14.40682 -14.20025 -14.05623 -13.52262 -13.43181 -13.19887 -13.04016 -12.70767 -12.55921 -12.37461 -12.10133 -12.03981 -11.96115 -11.77825 -11.65140 -11.46536 -11.31727 -11.17942 -11.08644 -10.92078 -10.87235 -10.71010 -10.39548 -10.31590 -10.20804 -10.08168 -10.04883 -9.77796 -9.41645 -8.98685 -8.36073 -7.05737 -5.83567 -3.14231 2.83830 3.19833 3.39510 3.45177 3.47519 4.39504 4.45550 4.49641 4.53249 4.70289 4.83225 4.97856 5.04542 5.10162 5.22167 5.24403 5.25620 5.35289 5.36052 5.39226 5.45843 5.49360 5.52190 5.55341 5.58112 5.61052 5.62756 5.69437 5.76230 5.77686 5.85200 5.86476 5.91903 5.96413 6.08824 6.12878 6.14484 6.18426 6.24596 6.26462 6.37940 6.45663 6.47137 6.58784 6.61533 6.89991 7.64172 7.78448 8.33508 8.39410 9.45292 9.99849 10.34518 11.38727 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.037322 B = 0.002362 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.055596 B =11852.124707 C =12157.505654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.071 4.071 8 H 0.081 0.919 9 C -0.132 4.132 10 C 0.524 3.476 11 O -0.543 6.543 12 N -0.614 5.614 13 C 0.099 3.901 14 C -0.155 4.155 15 C 0.171 3.829 16 H 0.063 0.937 17 N -0.716 5.716 18 C -0.244 4.244 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.101 3.899 27 C -0.103 4.103 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.386 0.614 47 H 0.256 0.744 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.359 9.082 -7.378 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.090 4.090 8 H 0.099 0.901 9 C -0.172 4.172 10 C 0.313 3.687 11 O -0.421 6.421 12 N -0.349 5.349 13 C -0.025 4.025 14 C -0.196 4.196 15 C 0.060 3.940 16 H 0.081 0.919 17 N -0.357 5.357 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.022 4.022 27 C -0.140 4.140 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.220 0.780 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.080 0.920 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.970 9.395 -7.734 25.994 hybrid contribution 0.611 -0.613 0.631 1.071 sum -22.358 8.782 -7.103 25.049 Atomic orbital electron populations 1.21867 0.94864 1.01562 1.01533 1.20508 0.94847 0.95646 0.95405 1.21989 1.01935 0.95156 1.01257 1.21605 0.96008 1.00086 0.96798 1.21547 0.95015 1.01133 0.97956 1.21705 1.02548 0.98132 0.93355 1.20961 0.94294 1.00465 0.93266 0.90096 1.21724 0.92147 1.02975 1.00376 1.20331 0.89752 0.78347 0.80303 1.90658 1.70442 1.42984 1.38020 1.48554 1.08346 1.54015 1.23952 1.22380 0.97183 0.94333 0.88573 1.23558 0.95689 0.98953 1.01399 1.21188 0.87380 0.91564 0.93912 0.91890 1.42378 1.25871 1.60476 1.06994 1.19251 1.04831 1.26275 0.87110 0.90911 1.24784 0.98512 1.00890 0.96575 1.69672 1.25304 1.42903 1.19851 0.86101 0.79810 0.78254 0.81879 1.20481 1.21820 1.21788 1.22252 0.79518 1.00674 0.99756 1.21663 0.94917 1.00367 0.97090 0.92778 0.92844 0.92799 0.91646 0.93032 0.92935 0.92197 0.92412 0.92358 0.91710 0.89830 0.92842 0.89207 0.89260 0.91380 0.91718 0.90653 0.90601 0.77957 0.93395 0.91786 0.91207 0.91967 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.47 37.16 0.31 -0.63 16 2 C -0.06 -0.50 0.77 -154.51 -0.12 -0.62 16 3 C -0.15 -1.17 7.78 37.16 0.29 -0.89 16 4 C -0.11 -0.88 4.73 -26.73 -0.13 -1.01 16 5 C -0.12 -1.16 5.65 -26.73 -0.15 -1.31 16 6 C -0.12 -1.35 4.94 -26.73 -0.13 -1.49 16 7 C -0.07 -0.73 1.56 -90.59 -0.14 -0.87 16 8 H 0.08 0.95 6.24 -51.93 -0.32 0.63 16 9 C -0.13 -1.40 4.18 -27.88 -0.12 -1.52 16 10 C 0.52 7.85 7.57 -10.99 -0.08 7.76 16 11 O -0.54 -9.92 14.29 5.55 0.08 -9.84 16 12 N -0.61 -9.38 3.33 -170.52 -0.57 -9.94 16 13 C 0.10 1.25 6.69 -2.53 -0.02 1.24 16 14 C -0.15 -2.48 6.77 -24.59 -0.17 -2.65 16 15 C 0.17 3.26 3.59 -66.10 -0.24 3.03 16 16 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 17 N -0.72 -17.47 5.25 -51.65 -0.27 -17.74 16 18 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 22 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 C 0.10 1.81 6.62 -3.06 -0.02 1.79 16 27 C -0.10 -0.84 4.01 -26.71 -0.11 -0.95 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.60 4.80 -51.93 -0.25 0.35 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 38 H 0.08 1.20 5.95 -51.93 -0.31 0.89 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.85 7.85 -51.93 -0.41 0.45 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.39 10.16 7.51 -40.82 -0.31 9.86 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 49 H 0.07 1.38 7.68 -51.93 -0.40 0.98 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -30.44 384.09 -9.78 -40.22 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -9.45 Total: 6.86 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.06 Total: -5.23 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.11 Total: -54.69 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.44 -9.78 -40.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970483999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.366 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds