Wall clock time and date at job start Fri Apr 10 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47206 * 2 1 4 4 C 1.53004 * 109.46979 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46978 * 180.28148 * 4 3 2 6 6 C 1.50696 * 115.55111 * 294.97531 * 5 4 3 7 7 O 1.21283 * 120.00357 * 114.01521 * 6 5 4 8 8 N 1.34776 * 119.99768 * 294.01539 * 6 5 4 9 9 C 1.46499 * 120.00343 * 174.81778 * 8 6 5 10 10 C 1.52999 * 109.47807 * 180.02562 * 9 8 6 11 11 H 1.08999 * 110.63949 * 56.67877 * 10 9 8 12 12 C 1.54326 * 110.71525 * 293.54384 * 10 9 8 13 13 N 1.47024 * 107.27022 * 219.44172 * 12 10 9 14 14 C 1.36940 * 125.64626 * 178.98226 * 13 12 10 15 15 H 1.07995 * 119.99987 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99614 * 179.97438 * 14 13 12 17 17 N 1.31623 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99904 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47419 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46967 * 120.00167 * 18 16 14 21 21 H 1.48498 * 109.47580 * 239.99890 * 18 16 14 22 22 C 1.47425 * 108.70145 * 358.94140 * 13 12 10 23 23 C 1.54909 * 104.83309 * 24.12645 * 22 13 12 24 24 H 1.09003 * 110.99737 * 81.06810 * 23 22 13 25 25 C 1.52995 * 111.00341 * 204.91516 * 23 22 13 26 26 C 1.53001 * 117.49976 * 149.30400 * 5 4 3 27 27 C 1.53003 * 117.49965 * 80.64281 * 5 4 3 28 28 H 1.09002 * 109.47640 * 59.99155 * 1 2 3 29 29 H 1.08991 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46613 * 299.99657 * 1 2 3 31 31 H 1.08992 * 109.46959 * 120.00587 * 2 1 3 32 32 H 1.09001 * 109.46613 * 240.00343 * 2 1 3 33 33 H 1.08992 * 109.47640 * 300.00170 * 3 2 1 34 34 H 1.09001 * 109.47054 * 60.00613 * 3 2 1 35 35 H 1.09005 * 109.47156 * 300.27993 * 4 3 2 36 36 H 1.08994 * 109.47292 * 60.27916 * 4 3 2 37 37 H 0.97006 * 120.00160 * 354.81252 * 8 6 5 38 38 H 1.09007 * 109.46938 * 299.99805 * 9 8 6 39 39 H 1.09004 * 109.47053 * 59.99471 * 9 8 6 40 40 H 1.09004 * 109.88643 * 338.86184 * 12 10 9 41 41 H 1.09010 * 109.88324 * 99.87083 * 12 10 9 42 42 H 0.97001 * 120.00097 * 180.02562 * 17 16 14 43 43 H 1.08994 * 110.36541 * 142.97109 * 22 13 12 44 44 H 1.09000 * 110.36383 * 265.17982 * 22 13 12 45 45 H 1.09000 * 109.47284 * 172.20224 * 25 23 22 46 46 H 1.09001 * 109.47025 * 292.19625 * 25 23 22 47 47 H 1.08998 * 109.47251 * 52.20105 * 25 23 22 48 48 H 1.09004 * 117.49413 * 0.02562 * 26 5 4 49 49 H 1.09001 * 117.50011 * 145.01663 * 26 5 4 50 50 H 1.08996 * 117.50077 * 214.97565 * 27 5 4 51 51 H 1.09000 * 117.49846 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0064 6 6 3.7550 3.6953 -1.2218 7 8 3.0064 4.6460 -1.1404 8 7 4.2961 3.3634 -2.4107 9 6 3.8934 4.0787 -3.6241 10 6 4.6504 3.5107 -4.8262 11 1 4.4771 2.4384 -4.9176 12 6 6.1597 3.8121 -4.7129 13 7 6.6388 4.1542 -6.0602 14 6 7.9216 4.5060 -6.3856 15 1 8.6806 4.5497 -5.6186 16 6 8.2463 4.8066 -7.7013 17 7 7.3213 4.7529 -8.6362 18 14 9.9959 5.2872 -8.1451 19 1 10.8388 5.2719 -6.9226 20 1 10.5394 4.3203 -9.1327 21 1 10.0007 6.6507 -8.7333 22 6 5.5097 4.0548 -7.0028 23 6 4.2454 4.2493 -6.1291 24 1 4.0615 5.3065 -5.9379 25 6 3.0252 3.5909 -6.7760 26 6 5.4161 3.1584 0.7001 27 6 4.1081 3.6177 1.3493 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 3.9338 0.9241 0.8866 36 1 3.9330 0.9331 -0.8933 37 1 4.9524 2.6510 -2.4630 38 1 2.8214 3.9560 -3.7793 39 1 4.1258 5.1381 -3.5154 40 1 6.3203 4.6526 -4.0378 41 1 6.6865 2.9329 -4.3418 42 1 7.5482 4.9625 -9.5557 43 1 5.5745 4.8395 -7.7564 44 1 5.4973 3.0738 -7.4778 45 1 2.1853 3.6210 -6.0818 46 1 2.7627 4.1285 -7.6872 47 1 3.2581 2.5544 -7.0198 48 1 5.9319 2.3106 1.1510 49 1 6.0598 3.9247 0.2682 50 1 3.8919 4.6860 1.3442 51 1 3.7636 3.0720 2.2277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102325503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:17 Heat of formation + Delta-G solvation = -19.489955 kcal Electronic energy + Delta-G solvation = -26181.043788 eV Core-core repulsion = 22694.600765 eV Total energy + Delta-G solvation = -3486.443022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.24851 -38.23684 -37.07209 -35.15643 -34.59446 -32.92061 -30.75765 -30.25900 -29.29798 -26.16561 -25.46303 -24.65173 -23.29953 -22.71901 -22.10076 -21.22878 -19.93482 -19.80365 -18.90087 -17.04994 -16.73086 -15.92153 -15.79511 -15.42617 -15.23091 -14.60014 -14.30688 -14.00775 -13.96866 -13.69050 -13.33553 -13.11230 -13.06986 -12.71225 -12.62167 -12.34319 -11.90810 -11.78271 -11.73924 -11.59258 -11.55817 -11.40491 -11.27896 -11.14442 -10.87847 -10.81911 -10.81689 -10.52482 -10.27655 -10.12489 -10.00815 -9.91547 -9.84659 -9.65584 -9.35525 -8.90596 -8.66154 -6.83871 -5.66170 -3.07880 2.63142 3.17669 3.38831 3.44340 3.46818 3.53163 4.29916 4.47497 4.55627 4.63025 4.72959 4.79183 4.87722 4.99675 5.12796 5.22064 5.25773 5.31076 5.37681 5.42415 5.49236 5.49727 5.55502 5.58238 5.65942 5.67566 5.74614 5.76931 5.79738 5.88098 5.91343 5.94285 6.05725 6.06977 6.12397 6.15951 6.20544 6.26597 6.49314 6.53699 6.59995 6.62334 6.80021 6.95022 7.53103 7.61051 7.62834 7.85897 8.30412 8.35801 9.21461 9.82315 10.47221 11.37631 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.002997 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.853450 B = 9339.345077 C =10191.899985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.074 4.074 5 C -0.158 4.158 6 C 0.549 3.451 7 O -0.542 6.542 8 N -0.719 5.719 9 C 0.133 3.867 10 C -0.109 4.109 11 H 0.076 0.924 12 C 0.142 3.858 13 N -0.605 5.605 14 C -0.222 4.222 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.159 3.841 23 C -0.111 4.111 24 H 0.071 0.929 25 C -0.134 4.134 26 C -0.160 4.160 27 C -0.145 4.145 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.402 0.598 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.251 0.749 43 H 0.106 0.894 44 H 0.013 0.987 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.382 -8.643 17.317 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.112 4.112 5 C -0.161 4.161 6 C 0.334 3.666 7 O -0.419 6.419 8 N -0.370 5.370 9 C 0.009 3.991 10 C -0.128 4.128 11 H 0.094 0.906 12 C 0.016 3.984 13 N -0.330 5.330 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.570 5.570 18 Si 0.745 3.255 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.035 3.965 23 C -0.131 4.131 24 H 0.089 0.911 25 C -0.192 4.192 26 C -0.198 4.198 27 C -0.182 4.182 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.035 0.965 42 H 0.062 0.938 43 H 0.124 0.876 44 H 0.031 0.969 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.122 0.878 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.796 -7.898 17.167 21.763 hybrid contribution 1.270 -0.179 -0.335 1.326 sum -9.526 -8.077 16.831 20.959 Atomic orbital electron populations 1.21769 0.95900 1.01443 1.01938 1.21526 0.95956 0.96761 1.01903 1.21578 0.94637 0.96665 1.02709 1.21094 0.95887 0.91447 1.02782 1.21509 1.03927 0.97407 0.93307 1.19459 0.79924 0.83671 0.83498 1.90687 1.36921 1.28565 1.85734 1.46019 1.44671 1.39131 1.07162 1.21447 0.98612 0.96548 0.82454 1.22485 0.96303 0.99900 0.94162 0.90554 1.21316 0.90808 0.96806 0.89501 1.44496 1.06677 1.79969 1.01898 1.19117 0.84633 1.38167 0.93076 0.90514 1.24789 0.98080 1.02158 0.95698 1.69809 1.30991 1.55539 1.00686 0.86006 0.83668 0.77834 0.78038 1.20559 1.21767 1.21727 1.21978 0.81585 1.00947 0.92036 1.22597 0.97233 0.98570 0.94705 0.91056 1.21649 0.96901 1.00549 1.00096 1.23127 0.90089 1.03798 1.02743 1.22970 0.99986 1.01337 0.93930 0.92671 0.92868 0.92807 0.92142 0.91979 0.91897 0.91701 0.90946 0.91062 0.76399 0.91799 0.91352 0.95877 0.96464 0.93784 0.87643 0.96908 0.93695 0.92661 0.92962 0.87844 0.88232 0.87955 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -1.06 5.08 -26.73 -0.14 -1.20 16 4 C -0.07 -0.63 5.09 -26.73 -0.14 -0.76 16 5 C -0.16 -1.64 1.90 -155.66 -0.30 -1.93 16 6 C 0.55 7.62 6.46 -10.99 -0.07 7.55 16 7 O -0.54 -9.60 16.72 5.56 0.09 -9.51 16 8 N -0.72 -9.50 5.40 -60.29 -0.33 -9.82 16 9 C 0.13 2.00 5.00 -4.04 -0.02 1.98 16 10 C -0.11 -1.81 2.48 -88.79 -0.22 -2.03 16 11 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 12 C 0.14 2.87 6.52 -3.06 -0.02 2.85 16 13 N -0.60 -15.36 3.39 -170.07 -0.58 -15.94 16 14 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 17 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 18 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.16 3.81 5.35 -2.53 -0.01 3.79 16 23 C -0.11 -2.04 3.09 -88.48 -0.27 -2.32 16 24 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 25 C -0.13 -2.06 9.31 37.16 0.35 -1.72 16 26 C -0.16 -1.43 9.93 -26.69 -0.26 -1.70 16 27 C -0.14 -1.38 9.78 -26.69 -0.26 -1.64 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.40 4.63 8.33 -40.82 -0.34 4.29 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 40 H 0.02 0.48 7.77 -51.93 -0.40 0.08 16 41 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.11 2.87 5.88 -51.93 -0.31 2.56 16 44 H 0.01 0.33 7.99 -51.93 -0.41 -0.09 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.10 1.12 8.00 -51.93 -0.42 0.71 16 51 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -31.50 404.19 -10.43 -41.93 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -9.84 Total: 2.16 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -1.41 Total: -5.74 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.34 Total: -51.98 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.50 -10.43 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102325503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.442 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds