Wall clock time and date at job start Fri Apr 10 2020 22:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46830 * 2 1 4 4 C 1.52995 * 109.47131 * 239.99730 * 2 1 3 5 5 C 1.53002 * 109.47457 * 60.00216 * 4 2 1 6 6 C 1.53779 * 113.61146 * 274.13869 * 5 4 2 7 7 C 1.53959 * 87.01719 * 220.04403 * 6 5 4 8 8 C 1.53775 * 113.61834 * 176.52681 * 5 4 2 9 9 C 1.50698 * 109.47036 * 119.99375 * 2 1 3 10 10 O 1.21280 * 119.99664 * 114.07776 * 9 2 1 11 11 N 1.34776 * 120.00433 * 294.36145 * 9 2 1 12 12 C 1.47082 * 120.88034 * 3.45708 * 11 9 2 13 13 C 1.53693 * 108.27592 * 128.75837 * 12 11 9 14 14 N 1.46893 * 109.25605 * 54.08471 * 13 12 11 15 15 C 1.46897 * 111.00084 * 172.60539 * 14 13 12 16 16 C 1.50694 * 109.47450 * 294.30561 * 15 14 13 17 17 H 1.08002 * 119.99835 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00155 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00155 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99825 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47540 * 59.99610 * 20 18 16 22 22 H 1.48501 * 109.47092 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46921 * 299.99229 * 20 18 16 24 24 C 1.46903 * 111.27102 * 296.75462 * 14 13 12 25 25 C 1.47080 * 120.88166 * 183.74115 * 11 9 2 26 26 H 1.08997 * 109.47678 * 281.95942 * 1 2 3 27 27 H 1.09007 * 109.47439 * 41.96060 * 1 2 3 28 28 H 1.09004 * 109.47062 * 161.95724 * 1 2 3 29 29 H 1.09003 * 109.46620 * 187.43816 * 3 2 1 30 30 H 1.08999 * 109.46807 * 307.43114 * 3 2 1 31 31 H 1.08995 * 109.47547 * 67.43609 * 3 2 1 32 32 H 1.09007 * 109.46713 * 179.97438 * 4 2 1 33 33 H 1.08995 * 109.47580 * 299.99817 * 4 2 1 34 34 H 1.09003 * 112.84778 * 45.32937 * 5 4 2 35 35 H 1.09000 * 113.61506 * 334.55985 * 6 5 4 36 36 H 1.08997 * 113.62106 * 105.46659 * 6 5 4 37 37 H 1.08997 * 113.53681 * 270.81124 * 7 6 5 38 38 H 1.09007 * 113.66561 * 139.93033 * 7 6 5 39 39 H 1.08997 * 113.61845 * 254.52817 * 8 5 4 40 40 H 1.09009 * 113.61160 * 25.34908 * 8 5 4 41 41 H 1.08994 * 109.63221 * 248.52913 * 12 11 9 42 42 H 1.09004 * 109.62611 * 9.10650 * 12 11 9 43 43 H 1.09004 * 109.64623 * 294.07910 * 13 12 11 44 44 H 1.08999 * 109.42172 * 173.94879 * 13 12 11 45 45 H 1.09002 * 109.47094 * 54.30582 * 15 14 13 46 46 H 1.09000 * 109.47456 * 174.29924 * 15 14 13 47 47 H 0.97002 * 120.00199 * 180.02562 * 19 18 16 48 48 H 1.08993 * 109.49261 * 303.14810 * 24 14 13 49 49 H 1.08999 * 109.49216 * 183.06247 * 24 14 13 50 50 H 1.08992 * 109.62751 * 350.89719 * 25 11 9 51 51 H 1.09003 * 109.62469 * 111.47592 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -0.0001 -2.4985 6 6 0.1293 -0.4534 -2.9427 7 6 0.6496 -0.3716 -4.3894 8 6 2.0574 -0.5981 -3.8134 9 6 2.0323 -0.7103 1.2305 10 8 2.6384 -1.7552 1.1225 11 7 1.8030 -0.1873 2.4514 12 6 1.0005 1.0350 2.6105 13 6 -0.0879 0.7635 3.6611 14 7 0.5407 0.2692 4.8933 15 6 -0.4423 0.1632 5.9798 16 6 -0.9353 1.5390 6.3471 17 1 -0.5561 2.4056 5.8258 18 6 -1.8698 1.6917 7.3494 19 7 -2.3312 0.6366 7.9845 20 14 -2.4815 3.3971 7.8041 21 1 -3.1194 4.0264 6.6200 22 1 -3.4751 3.2900 8.9026 23 1 -1.3367 4.2307 8.2512 24 6 1.2171 -1.0153 4.6682 25 6 2.3539 -0.8202 3.6593 26 1 -0.3634 0.2129 1.0053 27 1 -0.3634 0.7642 -0.6871 28 1 -0.3633 -0.9772 -0.3183 29 1 3.1218 1.4454 -0.1330 30 1 1.5721 1.9932 -0.8161 31 1 1.7893 1.9166 0.9489 32 1 3.1300 -0.7208 -1.2493 33 1 1.6767 -1.7489 -1.2492 34 1 1.6394 1.0826 -2.4364 35 1 -0.1230 -1.4653 -2.6261 36 1 -0.6551 0.2694 -2.7184 37 1 0.5170 0.6097 -4.8449 38 1 0.3022 -1.1854 -5.0260 39 1 2.8272 0.0080 -4.2910 40 1 2.3345 -1.6494 -3.7348 41 1 1.6400 1.8521 2.9440 42 1 0.5363 1.2946 1.6590 43 1 -0.7843 0.0153 3.2824 44 1 -0.6259 1.6876 3.8727 45 1 -1.2827 -0.4482 5.6511 46 1 0.0254 -0.2992 6.8490 47 1 -2.9889 0.7439 8.6893 48 1 0.5026 -1.7387 4.2756 49 1 1.6255 -1.3812 5.6102 50 1 2.7849 -1.7876 3.4017 51 1 3.1210 -0.1779 4.0918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183916755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:07 Heat of formation + Delta-G solvation = -6.364745 kcal Electronic energy + Delta-G solvation = -27051.937075 eV Core-core repulsion = 23566.063204 eV Total energy + Delta-G solvation = -3485.873871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82930 -39.08970 -37.50217 -35.62893 -34.28027 -32.40518 -30.84418 -28.56733 -28.18741 -27.62522 -25.86107 -25.57963 -24.25454 -23.30545 -22.42526 -21.24487 -19.96084 -19.38406 -18.43001 -16.55989 -16.39428 -16.17317 -15.73126 -15.14178 -14.87541 -14.64739 -14.61309 -14.45520 -13.99330 -13.71885 -13.63226 -13.56262 -12.93758 -12.72106 -12.64415 -12.39307 -12.33644 -12.04528 -11.91700 -11.69231 -11.51156 -11.26826 -11.14689 -11.02508 -10.98050 -10.80748 -10.77255 -10.65461 -10.54832 -10.46110 -10.27476 -10.23776 -9.87757 -9.33305 -9.30519 -8.51012 -8.40074 -7.33848 -6.08010 -4.10350 2.78089 3.15686 3.29166 3.34122 3.36151 4.33457 4.35797 4.37091 4.44307 4.61559 4.64633 4.76826 4.81260 4.88506 5.10498 5.25703 5.27361 5.30158 5.36161 5.42093 5.45472 5.51230 5.53597 5.55407 5.61956 5.65127 5.67452 5.69235 5.72164 5.76035 5.83544 5.86375 5.89751 6.02694 6.04827 6.09652 6.13997 6.20751 6.29558 6.37159 6.45287 6.45957 6.71899 7.20568 7.26326 7.60750 7.72488 8.00004 8.10678 8.33212 8.45690 8.96540 9.54206 11.02761 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.003062 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.890931 B = 9140.798378 C = 9839.681199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.077 4.077 3 C -0.161 4.161 4 C -0.082 4.082 5 C -0.110 4.110 6 C -0.136 4.136 7 C -0.145 4.145 8 C -0.138 4.138 9 C 0.523 3.477 10 O -0.552 6.552 11 N -0.605 5.605 12 C 0.091 3.909 13 C 0.049 3.951 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.511 4.511 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.042 3.958 25 C 0.117 3.883 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.025 0.975 44 H 0.096 0.904 45 H -0.009 1.009 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.026 0.974 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 0.255 -21.084 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.218 4.218 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.174 4.174 7 C -0.183 4.183 8 C -0.176 4.176 9 C 0.311 3.689 10 O -0.431 6.431 11 N -0.337 5.337 12 C -0.032 4.032 13 C -0.080 4.080 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.549 4.549 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.088 4.088 25 C -0.006 4.006 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.043 0.957 44 H 0.115 0.885 45 H 0.009 0.991 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.044 0.956 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.323 -0.023 -20.827 22.077 hybrid contribution -1.063 0.279 0.296 1.138 sum 6.260 0.257 -20.531 21.466 Atomic orbital electron populations 1.22236 0.92560 1.02988 1.03250 1.20696 0.97311 0.96598 0.93398 1.22366 1.01655 0.94029 1.03757 1.21404 1.00756 0.98760 0.91021 1.22633 0.96291 1.00192 0.93705 1.23089 0.96736 1.01753 0.95782 1.22857 0.96951 1.01661 0.96790 1.22928 0.96677 1.01319 0.96637 1.20579 0.79117 0.84839 0.84378 1.90641 1.42621 1.23330 1.86463 1.48162 1.51944 1.27649 1.05985 1.22663 0.93711 0.86577 1.00213 1.22448 0.94160 1.01537 0.89864 1.62081 1.32747 1.24817 1.06384 1.19718 0.88081 0.97410 0.87882 1.21093 1.22629 0.92633 1.18552 0.91863 1.24994 0.96415 0.96984 0.96153 1.69945 1.30648 1.28991 1.24096 0.86556 0.78529 0.84257 0.78033 1.20241 1.21360 1.20131 1.22393 0.95849 0.92144 0.98391 1.21743 0.96124 0.98705 0.83996 0.91046 0.91114 0.91951 0.92235 0.91328 0.90345 0.91485 0.91176 0.88957 0.90142 0.91469 0.90445 0.91763 0.91782 0.90185 0.90716 0.88047 0.95703 0.88544 0.99148 0.95062 0.92791 0.95598 0.90156 0.89515 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 6.66 37.16 0.25 -1.33 16 2 C -0.08 -0.86 0.52 -155.66 -0.08 -0.94 16 3 C -0.16 -1.51 7.58 37.16 0.28 -1.23 16 4 C -0.08 -0.86 3.40 -26.73 -0.09 -0.96 16 5 C -0.11 -0.91 3.09 -89.81 -0.28 -1.18 16 6 C -0.14 -1.07 5.81 -25.83 -0.15 -1.22 16 7 C -0.15 -1.04 8.09 -25.83 -0.21 -1.25 16 8 C -0.14 -1.07 7.65 -25.92 -0.20 -1.27 16 9 C 0.52 7.83 6.47 -10.99 -0.07 7.76 16 10 O -0.55 -10.01 15.43 5.56 0.09 -9.92 16 11 N -0.60 -9.12 3.00 -172.18 -0.52 -9.63 16 12 C 0.09 1.27 3.93 -3.36 -0.01 1.25 16 13 C 0.05 0.88 5.33 -3.47 -0.02 0.86 16 14 N -0.54 -11.04 4.62 -235.48 -1.09 -12.13 16 15 C 0.19 4.91 4.72 -4.98 -0.02 4.88 16 16 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 17 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 25 C 0.12 1.86 6.61 -3.60 -0.02 1.83 16 26 H 0.07 0.82 4.99 -51.93 -0.26 0.56 16 27 H 0.07 0.59 6.57 -51.92 -0.34 0.25 16 28 H 0.06 0.66 7.62 -51.93 -0.40 0.27 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 31 H 0.08 0.76 4.35 -51.93 -0.23 0.53 16 32 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 34 H 0.09 0.71 6.22 -51.93 -0.32 0.39 16 35 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 36 H 0.07 0.50 7.39 -51.93 -0.38 0.11 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.64 8.10 -51.92 -0.42 0.22 16 41 H 0.07 1.03 7.91 -51.93 -0.41 0.62 16 42 H 0.10 1.16 3.03 -51.93 -0.16 1.01 16 43 H 0.02 0.46 7.95 -51.93 -0.41 0.05 16 44 H 0.10 1.82 6.67 -51.93 -0.35 1.48 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 46 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 50 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 51 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -30.54 372.94 -10.12 -40.67 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.91 Total: -0.45 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.04 Total: -4.67 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.87 Total: -47.22 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.54 -10.12 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183916755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.301 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds