Wall clock time and date at job start Fri Apr 10 2020 22:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.53006 * 109.46997 * 60.00177 * 4 2 1 6 6 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.47274 * 300.00322 * 4 2 1 8 8 O 1.21288 * 119.99860 * 359.97438 * 7 4 2 9 9 N 1.34780 * 120.00311 * 179.97438 * 7 4 2 10 10 C 1.46492 * 120.00096 * 179.97438 * 9 7 4 11 11 H 1.09003 * 112.89011 * 333.16197 * 10 9 7 12 12 C 1.53954 * 113.66410 * 104.50818 * 10 9 7 13 13 C 1.53948 * 87.29628 * 139.20667 * 12 10 9 14 14 H 1.09001 * 113.66065 * 220.79474 * 13 12 10 15 15 N 1.46496 * 113.66597 * 89.83217 * 13 12 10 16 16 C 1.36932 * 120.00090 * 104.50246 * 15 13 12 17 17 H 1.07995 * 120.00455 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99652 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00279 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99578 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47247 * 59.99926 * 20 18 16 22 22 H 1.48501 * 109.46791 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47025 * 299.99739 * 20 18 16 24 24 C 1.52909 * 113.66210 * 201.69318 * 10 9 7 25 25 C 1.52909 * 121.13990 * 94.90689 * 24 10 9 26 26 C 1.53954 * 86.78539 * 209.37642 * 25 24 10 27 27 C 1.52907 * 121.13791 * 346.34262 * 24 10 9 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08996 * 109.47261 * 59.99820 * 5 4 2 36 36 H 1.09001 * 109.47377 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.46866 * 300.00212 * 5 4 2 38 38 H 1.09002 * 109.46838 * 59.99718 * 6 4 2 39 39 H 1.09001 * 109.47142 * 180.02562 * 6 4 2 40 40 H 1.08996 * 109.46698 * 300.00222 * 6 4 2 41 41 H 0.97006 * 119.99758 * 0.02562 * 9 7 4 42 42 H 1.09000 * 113.58118 * 253.81169 * 12 10 9 43 43 H 1.09003 * 113.57513 * 24.59860 * 12 10 9 44 44 H 0.97005 * 120.00103 * 284.50581 * 15 13 12 45 45 H 0.97004 * 119.99642 * 179.97438 * 19 18 16 46 46 H 1.08990 * 113.66599 * 323.84989 * 25 24 10 47 47 H 1.09007 * 113.66323 * 94.90784 * 25 24 10 48 48 H 1.09002 * 113.58018 * 270.13594 * 26 25 24 49 49 H 1.09002 * 113.65219 * 139.34971 * 26 25 24 50 50 H 1.09002 * 113.66655 * 265.09401 * 27 24 10 51 51 H 1.09003 * 113.66601 * 36.06749 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 0.0000 -2.4985 6 6 3.5700 -0.7219 -1.2489 7 6 1.5377 -2.1421 -1.2493 8 8 0.8407 -2.5389 -0.3394 9 7 1.8628 -2.9719 -2.2603 10 6 1.3750 -4.3532 -2.2600 11 1 1.1822 -4.7345 -1.2573 12 6 0.2203 -4.6009 -3.2478 13 6 0.8977 -5.9402 -3.5906 14 1 0.8795 -6.1801 -4.6537 15 7 0.4577 -7.0544 -2.7474 16 6 -0.4061 -7.9919 -3.2475 17 1 -0.7627 -7.9101 -4.2636 18 6 -0.8234 -9.0474 -2.4483 19 7 -0.3885 -9.1474 -1.2101 20 14 -2.0013 -10.3267 -3.1308 21 1 -1.3843 -10.9898 -4.3075 22 1 -2.2902 -11.3411 -2.0854 23 1 -3.2661 -9.6658 -3.5415 24 6 2.2063 -5.2978 -3.1288 25 6 3.3316 -6.1405 -2.5274 26 6 4.0132 -6.0570 -3.9053 27 6 3.2208 -4.7575 -4.1372 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.8933 1.0277 -2.4985 36 1 1.8930 -0.5140 -3.3885 37 1 0.4400 0.0000 -2.4985 38 1 3.9330 -1.2359 -0.3589 39 1 3.9333 -1.2353 -2.1392 40 1 3.9337 0.3056 -1.2487 41 1 2.4206 -2.6546 -2.9878 42 1 -0.7501 -4.7141 -2.7646 43 1 0.1998 -3.8970 -4.0798 44 1 0.7782 -7.1281 -1.8348 45 1 -0.6804 -9.8848 -0.6516 46 1 3.8825 -5.6334 -1.7354 47 1 3.0236 -7.1492 -2.2521 48 1 3.7322 -6.8654 -4.5804 49 1 5.0914 -5.9066 -3.8514 50 1 2.8243 -4.6614 -5.1480 51 1 3.7396 -3.8608 -3.7983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202967548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:04 Heat of formation + Delta-G solvation = 1.830494 kcal Electronic energy + Delta-G solvation = -27273.665280 eV Core-core repulsion = 23788.146782 eV Total energy + Delta-G solvation = -3485.518498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80760 -39.72890 -36.69370 -35.01301 -34.14389 -32.58844 -31.16199 -29.48976 -28.05808 -26.86553 -25.53633 -24.85513 -24.16879 -23.78524 -22.57420 -20.75231 -20.33250 -18.88786 -17.66819 -17.06161 -16.75058 -16.12167 -15.29912 -15.14556 -14.92607 -14.65525 -14.51607 -14.32565 -13.93029 -13.28455 -13.15795 -12.98531 -12.65818 -12.44137 -12.38949 -12.23877 -12.14725 -12.08231 -11.91897 -11.71417 -11.57394 -11.44128 -11.36220 -11.05767 -10.88150 -10.80363 -10.69402 -10.63401 -10.51550 -10.19340 -10.04670 -9.76952 -9.64382 -9.51765 -9.19478 -8.84296 -8.51911 -6.98571 -5.78039 -3.07700 2.84926 3.39186 3.44038 3.48530 3.49609 4.44206 4.51862 4.61141 4.66961 4.78510 4.91049 4.97237 5.04895 5.11305 5.18127 5.19824 5.31451 5.36089 5.37972 5.47668 5.56648 5.59152 5.62008 5.69122 5.75293 5.77436 5.81095 5.81501 5.89818 5.93335 5.96034 6.02024 6.04323 6.07227 6.11900 6.13135 6.26242 6.34902 6.44105 6.55866 6.57509 6.71492 6.75763 6.81045 6.90262 7.12710 7.69622 7.78412 8.40108 8.49578 9.51165 10.07539 10.42109 11.43945 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.003603 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.195129 B = 7769.835699 C = 8644.780295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.069 4.069 3 C -0.150 4.150 4 C -0.079 4.079 5 C -0.144 4.144 6 C -0.142 4.142 7 C 0.518 3.482 8 O -0.533 6.533 9 N -0.714 5.714 10 C 0.140 3.860 11 H 0.111 0.889 12 C -0.181 4.181 13 C 0.197 3.803 14 H 0.065 0.935 15 N -0.701 5.701 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.133 4.133 27 C -0.115 4.115 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.393 0.607 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 20.034 -3.474 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.088 4.088 3 C -0.208 4.208 4 C -0.082 4.082 5 C -0.201 4.201 6 C -0.199 4.199 7 C 0.304 3.696 8 O -0.410 6.410 9 N -0.364 5.364 10 C 0.036 3.964 11 H 0.129 0.871 12 C -0.224 4.224 13 C 0.084 3.916 14 H 0.083 0.917 15 N -0.339 5.339 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.124 4.124 25 C -0.164 4.164 26 C -0.170 4.170 27 C -0.153 4.153 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.228 0.772 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.350 19.566 -2.882 21.876 hybrid contribution -0.302 -0.510 -0.324 0.676 sum 9.048 19.056 -3.207 21.337 Atomic orbital electron populations 1.22135 0.94692 1.04357 1.00662 1.20864 0.96638 0.95026 0.96305 1.21986 1.00896 0.96061 1.01816 1.20829 0.96794 0.92672 0.97913 1.21958 1.02087 1.00565 0.95490 1.21911 0.92901 1.02720 1.02407 1.20505 0.80087 0.87154 0.81845 1.90653 1.37491 1.76870 1.35940 1.46092 1.53169 1.12500 1.24619 1.22363 0.94976 0.79211 0.99840 0.87068 1.24276 0.98993 1.00613 0.98514 1.20630 0.89068 0.87029 0.94922 0.91660 1.42089 1.53705 1.24897 1.13176 1.19195 1.19201 1.02079 0.97090 0.91071 1.24755 1.00732 0.99047 0.96046 1.69655 1.47939 1.33089 1.06994 0.86260 0.80932 0.81277 0.77642 1.21242 1.21690 1.21213 1.23543 0.94733 0.97080 0.97076 1.22635 0.96217 1.01570 0.95936 1.22739 0.98193 0.97677 0.98440 1.22525 0.96903 0.97308 0.98586 0.93298 0.93309 0.89637 0.90750 0.92678 0.92546 0.92434 0.91321 0.92387 0.91651 0.92068 0.92307 0.91262 0.77168 0.91002 0.91416 0.77854 0.93342 0.91095 0.89932 0.90047 0.92286 0.91442 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.52 37.16 0.32 -1.61 16 2 C -0.07 -0.74 1.92 -90.63 -0.17 -0.92 16 3 C -0.15 -1.21 8.49 37.15 0.32 -0.89 16 4 C -0.08 -0.82 0.43 -155.66 -0.07 -0.88 16 5 C -0.14 -1.24 7.67 37.16 0.28 -0.95 16 6 C -0.14 -1.20 8.02 37.16 0.30 -0.90 16 7 C 0.52 7.44 6.19 -10.98 -0.07 7.37 16 8 O -0.53 -9.95 13.30 5.55 0.07 -9.88 16 9 N -0.71 -9.55 5.08 -53.37 -0.27 -9.82 16 10 C 0.14 2.35 4.01 -67.48 -0.27 2.08 16 11 H 0.11 2.28 7.54 -51.93 -0.39 1.89 16 12 C -0.18 -3.26 7.68 -25.75 -0.20 -3.46 16 13 C 0.20 3.84 4.35 -67.48 -0.29 3.54 16 14 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 15 N -0.70 -17.26 4.91 -52.99 -0.26 -17.52 16 16 C -0.24 -6.71 9.98 -15.06 -0.15 -6.86 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.12 -1.92 0.91 -154.71 -0.14 -2.07 16 25 C -0.13 -2.01 7.60 -26.28 -0.20 -2.21 16 26 C -0.13 -1.78 8.08 -25.74 -0.21 -1.99 16 27 C -0.12 -1.42 7.16 -26.28 -0.19 -1.61 16 28 H 0.05 0.52 6.43 -51.93 -0.33 0.19 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.31 5.51 -51.93 -0.29 1.02 16 31 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 34 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 35 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 36 H 0.06 0.45 7.56 -51.93 -0.39 0.05 16 37 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 40 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 41 H 0.39 4.21 5.76 -40.82 -0.23 3.98 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.39 10.26 7.48 -40.82 -0.31 9.95 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.08 1.58 7.51 -51.93 -0.39 1.19 16 48 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.76 6.96 -51.93 -0.36 0.40 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -30.79 383.81 -8.76 -39.55 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -8.95 Total: 13.57 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.84 Total: -11.72 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.19 Total: -54.62 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.79 -8.76 -39.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202967548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.383 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds