Wall clock time and date at job start Fri Apr 10 2020 22:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.53006 * 109.46997 * 60.00177 * 4 2 1 6 6 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.47274 * 300.00322 * 4 2 1 8 8 O 1.21288 * 119.99860 * 359.97438 * 7 4 2 9 9 N 1.34780 * 120.00311 * 179.97438 * 7 4 2 10 10 C 1.46492 * 120.00096 * 179.97438 * 9 7 4 11 11 H 1.09003 * 112.89011 * 333.16197 * 10 9 7 12 12 C 1.53954 * 113.66410 * 104.50818 * 10 9 7 13 13 C 1.53948 * 87.29628 * 139.20667 * 12 10 9 14 14 H 1.09001 * 113.66065 * 220.79474 * 13 12 10 15 15 N 1.46496 * 113.66597 * 89.83217 * 13 12 10 16 16 C 1.36932 * 120.00090 * 104.50246 * 15 13 12 17 17 H 1.07995 * 120.00455 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99652 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00279 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99578 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47247 * 59.99926 * 20 18 16 22 22 H 1.48501 * 109.46791 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47025 * 299.99739 * 20 18 16 24 24 C 1.52909 * 113.66210 * 201.69318 * 10 9 7 25 25 C 1.52909 * 121.13990 * 94.90689 * 24 10 9 26 26 C 1.53954 * 86.78539 * 209.37642 * 25 24 10 27 27 C 1.52907 * 121.13791 * 346.34262 * 24 10 9 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08996 * 109.47261 * 59.99820 * 5 4 2 36 36 H 1.09001 * 109.47377 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.46866 * 300.00212 * 5 4 2 38 38 H 1.09002 * 109.46838 * 59.99718 * 6 4 2 39 39 H 1.09001 * 109.47142 * 180.02562 * 6 4 2 40 40 H 1.08996 * 109.46698 * 300.00222 * 6 4 2 41 41 H 0.97006 * 119.99758 * 0.02562 * 9 7 4 42 42 H 1.09000 * 113.58118 * 253.81169 * 12 10 9 43 43 H 1.09003 * 113.57513 * 24.59860 * 12 10 9 44 44 H 0.97005 * 120.00103 * 284.50581 * 15 13 12 45 45 H 0.97004 * 119.99642 * 179.97438 * 19 18 16 46 46 H 1.08990 * 113.66599 * 323.84989 * 25 24 10 47 47 H 1.09007 * 113.66323 * 94.90784 * 25 24 10 48 48 H 1.09002 * 113.58018 * 270.13594 * 26 25 24 49 49 H 1.09002 * 113.65219 * 139.34971 * 26 25 24 50 50 H 1.09002 * 113.66655 * 265.09401 * 27 24 10 51 51 H 1.09003 * 113.66601 * 36.06749 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 0.0000 -2.4985 6 6 3.5700 -0.7219 -1.2489 7 6 1.5377 -2.1421 -1.2493 8 8 0.8407 -2.5389 -0.3394 9 7 1.8628 -2.9719 -2.2603 10 6 1.3750 -4.3532 -2.2600 11 1 1.1822 -4.7345 -1.2573 12 6 0.2203 -4.6009 -3.2478 13 6 0.8977 -5.9402 -3.5906 14 1 0.8795 -6.1801 -4.6537 15 7 0.4577 -7.0544 -2.7474 16 6 -0.4061 -7.9919 -3.2475 17 1 -0.7627 -7.9101 -4.2636 18 6 -0.8234 -9.0474 -2.4483 19 7 -0.3885 -9.1474 -1.2101 20 14 -2.0013 -10.3267 -3.1308 21 1 -1.3843 -10.9898 -4.3075 22 1 -2.2902 -11.3411 -2.0854 23 1 -3.2661 -9.6658 -3.5415 24 6 2.2063 -5.2978 -3.1288 25 6 3.3316 -6.1405 -2.5274 26 6 4.0132 -6.0570 -3.9053 27 6 3.2208 -4.7575 -4.1372 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.8933 1.0277 -2.4985 36 1 1.8930 -0.5140 -3.3885 37 1 0.4400 0.0000 -2.4985 38 1 3.9330 -1.2359 -0.3589 39 1 3.9333 -1.2353 -2.1392 40 1 3.9337 0.3056 -1.2487 41 1 2.4206 -2.6546 -2.9878 42 1 -0.7501 -4.7141 -2.7646 43 1 0.1998 -3.8970 -4.0798 44 1 0.7782 -7.1281 -1.8348 45 1 -0.6804 -9.8848 -0.6516 46 1 3.8825 -5.6334 -1.7354 47 1 3.0236 -7.1492 -2.2521 48 1 3.7322 -6.8654 -4.5804 49 1 5.0914 -5.9066 -3.8514 50 1 2.8243 -4.6614 -5.1480 51 1 3.7396 -3.8608 -3.7983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202967548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:03 Heat of formation + Delta-G solvation = -17.156698 kcal Electronic energy + Delta-G solvation = -27274.488627 eV Core-core repulsion = 23788.146782 eV Total energy + Delta-G solvation = -3486.341845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05681 -40.88670 -37.69953 -36.48950 -35.68227 -34.18239 -32.31154 -31.21937 -28.76045 -27.59859 -26.76767 -26.44666 -25.56325 -24.99756 -24.00146 -21.92352 -21.67384 -19.94859 -19.40878 -18.59840 -17.80600 -17.39477 -16.70222 -16.32531 -16.29636 -15.90608 -15.75105 -15.33536 -15.24968 -14.89155 -14.38562 -14.04251 -13.98245 -13.64436 -13.47676 -13.34895 -13.13425 -13.05097 -12.99168 -12.79956 -12.76302 -12.67534 -12.61120 -12.52924 -12.24043 -12.14072 -12.03614 -11.89017 -11.79503 -11.42525 -11.32784 -11.26562 -11.18139 -10.90534 -10.73575 -10.34868 -9.81731 -9.02387 -7.96288 -5.25617 1.45045 1.48683 1.54590 1.71886 2.26297 2.53453 3.35064 3.41095 3.54396 3.61624 3.74945 3.80664 3.88784 3.97318 4.02729 4.17561 4.19880 4.25013 4.37792 4.45389 4.57120 4.60185 4.64279 4.78422 4.79207 4.82646 4.84389 4.86999 4.90822 4.93638 4.98163 5.06335 5.10181 5.11520 5.13903 5.16247 5.16973 5.24533 5.28147 5.33844 5.36689 5.47059 5.51487 5.57909 5.59932 5.63903 5.77755 6.25280 6.68261 7.30500 7.39585 8.06778 8.29179 9.26930 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.003603 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.195129 B = 7769.835699 C = 8644.780295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.072 4.072 3 C -0.143 4.143 4 C -0.071 4.071 5 C -0.143 4.143 6 C -0.141 4.141 7 C 0.510 3.490 8 O -0.585 6.585 9 N -0.697 5.697 10 C 0.149 3.851 11 H 0.062 0.938 12 C -0.171 4.171 13 C 0.178 3.822 14 H 0.071 0.929 15 N -0.716 5.716 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.975 3.025 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.279 1.279 24 C -0.111 4.111 25 C -0.136 4.136 26 C -0.124 4.124 27 C -0.094 4.094 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.412 0.588 42 H 0.032 0.968 43 H 0.102 0.898 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.081 0.919 47 H 0.039 0.961 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.121 23.049 -6.452 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.074 4.074 5 C -0.200 4.200 6 C -0.198 4.198 7 C 0.298 3.702 8 O -0.465 6.465 9 N -0.349 5.349 10 C 0.044 3.956 11 H 0.081 0.919 12 C -0.213 4.213 13 C 0.067 3.933 14 H 0.089 0.911 15 N -0.353 5.353 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.804 3.196 21 H -0.199 1.199 22 H -0.224 1.224 23 H -0.205 1.205 24 C -0.113 4.113 25 C -0.174 4.174 26 C -0.161 4.161 27 C -0.132 4.132 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.251 0.749 42 H 0.050 0.950 43 H 0.120 0.880 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.105 0.895 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.517 22.640 -5.939 26.086 hybrid contribution -0.990 -1.403 0.640 1.833 sum 10.527 21.236 -5.299 24.288 Atomic orbital electron populations 1.22080 0.96091 1.01932 1.01573 1.20879 0.95510 0.97001 0.95687 1.21937 1.01826 0.93579 1.02664 1.20851 0.98338 0.89398 0.98786 1.22001 1.01245 1.02007 0.94712 1.21954 0.90725 1.04529 1.02568 1.21445 0.79035 0.88837 0.80879 1.90655 1.39783 1.78122 1.37959 1.45851 1.53003 1.10821 1.25203 1.21821 0.95183 0.81387 0.97243 0.91939 1.24154 0.97205 1.00400 0.99527 1.20901 0.91855 0.86146 0.94367 0.91100 1.42233 1.53748 1.26146 1.13138 1.19638 1.18518 1.02090 0.97233 0.90224 1.25597 1.03144 1.01574 0.96461 1.69837 1.49968 1.33809 1.08467 0.85194 0.78945 0.78553 0.76958 1.19934 1.22417 1.20543 1.23386 0.93693 0.96279 0.97989 1.22682 0.97172 0.99316 0.98197 1.22687 0.99898 0.97983 0.95561 1.22564 0.94496 0.97833 0.98269 0.91857 0.92915 0.93635 0.93278 0.92569 0.90960 0.90919 0.88668 0.90765 0.93107 0.93522 0.90609 0.88632 0.74900 0.94951 0.88002 0.79635 0.94095 0.90071 0.94182 0.91240 0.89463 0.89513 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 8.52 71.98 0.61 -3.26 16 2 C -0.07 -1.47 1.92 -10.80 -0.02 -1.49 16 3 C -0.14 -1.86 8.49 71.98 0.61 -1.24 16 4 C -0.07 -1.31 0.43 -52.92 -0.02 -1.34 16 5 C -0.14 -1.92 7.67 71.98 0.55 -1.36 16 6 C -0.14 -1.86 8.02 71.98 0.58 -1.28 16 7 C 0.51 14.58 6.19 87.66 0.54 15.13 16 8 O -0.59 -23.33 13.30 -3.05 -0.04 -23.37 16 9 N -0.70 -17.69 5.08 -441.15 -2.24 -19.93 16 10 C 0.15 5.10 4.01 45.28 0.18 5.28 16 11 H 0.06 2.79 7.54 -2.39 -0.02 2.77 16 12 C -0.17 -6.20 7.68 31.23 0.24 -5.96 16 13 C 0.18 7.04 4.35 45.28 0.20 7.24 16 14 H 0.07 2.70 8.12 -2.39 -0.02 2.68 16 15 N -0.72 -37.07 4.91 -321.57 -1.58 -38.65 16 16 C -0.24 -13.75 9.98 84.04 0.84 -12.91 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -61.47 13.06 21.65 0.28 -61.19 16 20 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 24 C -0.11 -3.43 0.91 -52.31 -0.05 -3.48 16 25 C -0.14 -4.34 7.60 30.89 0.23 -4.11 16 26 C -0.12 -2.98 8.08 31.23 0.25 -2.73 16 27 C -0.09 -1.92 7.16 30.89 0.22 -1.70 16 28 H 0.06 1.31 6.43 -2.39 -0.02 1.29 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 1.49 5.51 -2.38 -0.01 1.47 16 31 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.73 6.43 -2.39 -0.02 0.71 16 34 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 35 H 0.09 0.82 6.43 -2.39 -0.02 0.81 16 36 H 0.07 0.77 7.56 -2.39 -0.02 0.76 16 37 H 0.05 0.85 6.43 -2.39 -0.02 0.83 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.76 7.56 -2.39 -0.02 0.74 16 40 H 0.09 0.80 6.43 -2.39 -0.02 0.79 16 41 H 0.41 7.19 5.76 -92.70 -0.53 6.65 16 42 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.37 21.23 7.48 -92.70 -0.69 20.53 16 45 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.04 1.62 7.51 -2.38 -0.02 1.60 16 48 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.11 1.55 6.96 -2.39 -0.02 1.54 16 Total: -1.00 -74.44 383.81 3.58 -70.87 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -0.31 Total: 40.28 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 5.44 Total: -17.20 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -3.54 Total: -119.77 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.04 Total: -23.37 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -74.44 3.58 -70.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202967548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.709 kcal (2) G-P(sol) polarization free energy of solvation -74.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds