Wall clock time and date at job start Fri Apr 10 2020 22:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47640 * 2 1 4 4 C 1.53001 * 109.46900 * 301.54950 * 3 2 1 5 5 C 1.52999 * 109.46920 * 294.97598 * 4 3 2 6 6 C 1.53001 * 109.46973 * 61.54261 * 3 2 1 7 7 C 1.50700 * 109.46756 * 65.00436 * 6 3 2 8 8 O 1.21285 * 120.00213 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99728 * 179.97438 * 7 6 3 10 10 C 1.46498 * 119.99714 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.95303 * 336.40960 * 10 9 7 12 12 C 1.53950 * 113.66464 * 107.81825 * 10 9 7 13 13 C 1.53949 * 87.29735 * 139.20458 * 12 10 9 14 14 H 1.09008 * 113.74381 * 220.79034 * 13 12 10 15 15 N 1.46492 * 113.66480 * 89.74018 * 13 12 10 16 16 C 1.36939 * 119.99798 * 108.08474 * 15 13 12 17 17 H 1.07997 * 120.00039 * 359.73243 * 16 15 13 18 18 C 1.38813 * 119.99684 * 179.72543 * 16 15 13 19 19 N 1.31621 * 120.00289 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99998 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47354 * 59.99858 * 20 18 16 22 22 H 1.48495 * 109.47502 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46720 * 299.99873 * 20 18 16 24 24 C 1.52905 * 113.66146 * 205.00480 * 10 9 7 25 25 C 1.52909 * 121.13795 * 346.34483 * 24 10 9 26 26 C 1.53958 * 86.78048 * 100.81966 * 25 24 10 27 27 C 1.52914 * 121.13822 * 94.90759 * 24 10 9 28 28 H 1.08996 * 109.47035 * 301.89244 * 1 2 3 29 29 H 1.08997 * 109.46581 * 61.88643 * 1 2 3 30 30 H 1.09001 * 109.47423 * 181.88750 * 1 2 3 31 31 H 1.09003 * 109.47056 * 239.99565 * 2 1 3 32 32 H 1.09001 * 109.46436 * 119.99911 * 2 1 3 33 33 H 1.08993 * 109.47581 * 181.54804 * 3 2 1 34 34 H 1.09004 * 109.47418 * 54.97464 * 4 3 2 35 35 H 1.08996 * 109.47314 * 174.97986 * 4 3 2 36 36 H 1.09006 * 109.47461 * 185.79725 * 5 4 3 37 37 H 1.09000 * 109.47639 * 305.79639 * 5 4 3 38 38 H 1.09000 * 109.47204 * 65.79873 * 5 4 3 39 39 H 1.08998 * 109.47739 * 305.00505 * 6 3 2 40 40 H 1.08996 * 109.46935 * 185.00000 * 6 3 2 41 41 H 0.96989 * 120.00055 * 0.02562 * 9 7 6 42 42 H 1.09009 * 113.57715 * 24.59571 * 12 10 9 43 43 H 1.08998 * 113.57925 * 253.80732 * 12 10 9 44 44 H 0.96999 * 120.00041 * 287.81497 * 15 13 12 45 45 H 0.97003 * 119.99989 * 180.02562 * 19 18 16 46 46 H 1.09000 * 113.66856 * 215.29376 * 25 24 10 47 47 H 1.09004 * 113.66389 * 346.35433 * 25 24 10 48 48 H 1.08997 * 113.58307 * 270.13096 * 26 25 24 49 49 H 1.08999 * 113.64881 * 139.34973 * 26 25 24 50 50 H 1.08993 * 113.65912 * 13.65852 * 27 24 10 51 51 H 1.09005 * 113.66084 * 144.61550 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 1.4986 2.1748 -1.2293 5 6 2.0771 1.5414 -2.4962 6 6 1.5622 2.1524 1.2682 7 6 2.1940 1.5061 2.4741 8 8 2.9516 0.5695 2.3331 9 7 1.9172 1.9689 3.7093 10 6 2.5318 1.3409 4.8815 11 1 2.8415 0.3119 4.6991 12 6 3.6190 2.2047 5.5464 13 6 3.0452 1.7540 6.9020 14 1 2.9975 2.5502 7.6450 15 7 3.6553 0.5271 7.4201 16 6 4.5038 0.5847 8.4934 17 1 4.7265 1.5352 8.9552 18 6 5.0775 -0.5786 8.9878 19 7 4.8063 -1.7370 8.4248 20 14 6.2343 -0.5001 10.4524 21 1 5.5163 0.0703 11.6204 22 1 6.7089 -1.8680 10.7823 23 1 7.3980 0.3598 10.1184 24 6 1.7245 1.5200 6.1677 25 6 0.5835 2.5345 6.2503 26 6 -0.3732 1.3441 6.0559 27 6 0.7375 0.4505 6.6371 28 1 -0.3633 0.5429 0.8725 29 1 -0.3632 0.4843 -0.9064 30 1 -0.3634 -1.0271 0.0338 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.1297 1.4425 -0.0278 34 1 0.4115 2.0979 -1.2485 35 1 1.7878 3.2247 -1.1834 36 1 1.7742 2.1255 -3.3654 37 1 3.1650 1.5255 -2.4304 38 1 1.7041 0.5220 -2.5956 39 1 0.4774 2.0750 1.3411 40 1 1.8495 3.2030 1.2267 41 1 1.3110 2.7176 3.8221 42 1 3.5040 3.2721 5.3573 43 1 4.6324 1.8484 5.3618 44 1 3.4552 -0.3266 7.0053 45 1 5.2069 -2.5499 8.7706 46 1 0.4935 3.0135 7.2252 47 1 0.5699 3.2459 5.4244 48 1 -0.6004 1.1332 5.0110 49 1 -1.2649 1.3932 6.6809 50 1 0.8473 -0.5029 6.1205 51 1 0.6921 0.3426 7.7209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203546662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:09 Heat of formation + Delta-G solvation = -6.093686 kcal Electronic energy + Delta-G solvation = -26649.935299 eV Core-core repulsion = 23164.073183 eV Total energy + Delta-G solvation = -3485.862117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66319 -39.34203 -36.98517 -35.04705 -33.95653 -32.41999 -31.38636 -30.20909 -29.33138 -25.58328 -25.53668 -24.32844 -23.95044 -23.57894 -22.57499 -20.30836 -20.11938 -19.14846 -17.92634 -17.24044 -16.62135 -16.08411 -15.84728 -15.42966 -15.20196 -14.84756 -14.32374 -14.14738 -13.86443 -13.61952 -13.10667 -12.98836 -12.74354 -12.63293 -12.46405 -12.18365 -12.13335 -12.04665 -11.82717 -11.72376 -11.55172 -11.46678 -11.25796 -10.92026 -10.81980 -10.67082 -10.56268 -10.52813 -10.45664 -10.23053 -10.05878 -9.85241 -9.67191 -9.54912 -9.26298 -8.81599 -8.57264 -6.96336 -5.76989 -3.06452 2.84193 3.39829 3.44275 3.48736 3.49889 4.54260 4.61001 4.65938 4.71142 4.75113 4.89204 4.95589 5.02762 5.09358 5.17570 5.18351 5.29007 5.35099 5.38304 5.43663 5.47506 5.52859 5.61661 5.65401 5.70641 5.76739 5.77725 5.89540 5.91657 5.98648 6.02177 6.04293 6.05698 6.06434 6.11323 6.19156 6.25786 6.33779 6.42323 6.49482 6.52034 6.67670 6.72346 6.79084 6.87683 7.11848 7.70079 7.76510 8.41282 8.47544 9.52161 10.09429 10.43827 11.45012 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.003128 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.464938 B = 8949.688221 C = 9585.912254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.128 4.128 3 C -0.071 4.071 4 C -0.123 4.123 5 C -0.152 4.152 6 C -0.142 4.142 7 C 0.508 3.492 8 O -0.535 6.535 9 N -0.719 5.719 10 C 0.153 3.847 11 H 0.114 0.886 12 C -0.183 4.183 13 C 0.186 3.814 14 H 0.067 0.933 15 N -0.701 5.701 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.129 4.129 25 C -0.109 4.109 26 C -0.141 4.141 27 C -0.113 4.113 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.394 0.606 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.464 10.333 -16.707 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.209 4.209 6 C -0.181 4.181 7 C 0.294 3.706 8 O -0.412 6.412 9 N -0.369 5.369 10 C 0.049 3.951 11 H 0.132 0.868 12 C -0.225 4.225 13 C 0.072 3.928 14 H 0.085 0.915 15 N -0.338 5.338 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.131 4.131 25 C -0.147 4.147 26 C -0.178 4.178 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.779 9.636 -16.633 22.544 hybrid contribution 0.318 0.138 0.679 0.762 sum -11.461 9.774 -15.954 21.941 Atomic orbital electron populations 1.21900 0.96663 1.01362 1.01280 1.21687 0.95217 0.96262 1.03381 1.20932 1.00992 0.95039 0.91990 1.21646 1.00780 0.99173 0.94406 1.21786 1.01147 1.00930 0.97079 1.21840 1.02007 1.00800 0.93500 1.20681 0.81616 0.83710 0.84552 1.90690 1.36138 1.28350 1.86010 1.46158 1.48683 1.36010 1.06096 1.22231 0.93273 0.98498 0.81067 0.86827 1.24305 0.99299 0.98252 1.00692 1.20788 0.89451 0.90799 0.91712 0.91534 1.42081 1.52730 1.03240 1.35760 1.19211 1.19111 0.93312 1.05867 0.91099 1.24760 1.00841 0.95367 0.99714 1.69658 1.47681 0.97457 1.42929 0.86262 0.80844 0.76510 0.82509 1.21252 1.21700 1.21239 1.23517 0.94964 0.97723 0.96943 1.22504 0.95132 0.95607 1.01452 1.22861 0.97046 0.97321 1.00618 1.22535 0.94338 0.96919 1.01296 0.92921 0.92809 0.93089 0.92205 0.89772 0.90437 0.91619 0.92255 0.93082 0.92691 0.92492 0.88950 0.89360 0.77094 0.91383 0.91027 0.77920 0.93360 0.89685 0.92382 0.90956 0.92038 0.91857 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.21 37.16 0.34 -1.08 16 2 C -0.13 -1.41 5.18 -26.73 -0.14 -1.55 16 3 C -0.07 -0.71 1.81 -90.62 -0.16 -0.88 16 4 C -0.12 -0.95 5.15 -26.73 -0.14 -1.09 16 5 C -0.15 -1.16 9.52 37.16 0.35 -0.80 16 6 C -0.14 -1.36 4.99 -27.88 -0.14 -1.50 16 7 C 0.51 7.03 7.54 -10.98 -0.08 6.94 16 8 O -0.54 -9.75 13.57 5.55 0.08 -9.68 16 9 N -0.72 -9.35 5.28 -53.37 -0.28 -9.64 16 10 C 0.15 2.55 4.03 -67.48 -0.27 2.27 16 11 H 0.11 2.31 7.47 -51.93 -0.39 1.92 16 12 C -0.18 -3.26 7.68 -25.75 -0.20 -3.46 16 13 C 0.19 3.63 4.36 -67.49 -0.29 3.33 16 14 H 0.07 1.29 8.10 -51.92 -0.42 0.87 16 15 N -0.70 -17.35 5.09 -52.99 -0.27 -17.62 16 16 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 C -0.13 -2.03 0.92 -154.71 -0.14 -2.17 16 25 C -0.11 -1.34 7.47 -26.28 -0.20 -1.53 16 26 C -0.14 -1.74 8.08 -25.75 -0.21 -1.95 16 27 C -0.11 -1.81 7.49 -26.28 -0.20 -2.01 16 28 H 0.05 0.48 6.27 -51.93 -0.33 0.15 16 29 H 0.05 0.42 6.39 -51.93 -0.33 0.09 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.62 6.77 -51.93 -0.35 0.27 16 32 H 0.08 1.20 5.92 -51.93 -0.31 0.89 16 33 H 0.08 0.93 7.95 -51.93 -0.41 0.51 16 34 H 0.07 0.47 6.17 -51.93 -0.32 0.15 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.44 6.89 -51.93 -0.36 0.08 16 39 H 0.09 0.74 6.18 -51.93 -0.32 0.42 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.39 4.01 6.72 -40.82 -0.27 3.74 16 42 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 44 H 0.39 10.32 7.81 -40.82 -0.32 10.00 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.59 6.42 -51.93 -0.33 0.25 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -31.03 389.70 -9.71 -40.73 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -9.08 Total: 13.10 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.72 Total: -12.73 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.17 Total: -54.68 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.03 -9.71 -40.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203546662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.639 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds