Wall clock time and date at job start Fri Apr 10 2020 22:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47640 * 2 1 4 4 C 1.53001 * 109.46900 * 301.54950 * 3 2 1 5 5 C 1.52999 * 109.46920 * 294.97598 * 4 3 2 6 6 C 1.53001 * 109.46973 * 61.54261 * 3 2 1 7 7 C 1.50700 * 109.46756 * 65.00436 * 6 3 2 8 8 O 1.21285 * 120.00213 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99728 * 179.97438 * 7 6 3 10 10 C 1.46498 * 119.99714 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.95303 * 336.40960 * 10 9 7 12 12 C 1.53950 * 113.66464 * 107.81825 * 10 9 7 13 13 C 1.53949 * 87.29735 * 139.20458 * 12 10 9 14 14 H 1.09008 * 113.74381 * 220.79034 * 13 12 10 15 15 N 1.46492 * 113.66480 * 89.74018 * 13 12 10 16 16 C 1.36939 * 119.99798 * 108.08474 * 15 13 12 17 17 H 1.07997 * 120.00039 * 359.73243 * 16 15 13 18 18 C 1.38813 * 119.99684 * 179.72543 * 16 15 13 19 19 N 1.31621 * 120.00289 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99998 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47354 * 59.99858 * 20 18 16 22 22 H 1.48495 * 109.47502 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46720 * 299.99873 * 20 18 16 24 24 C 1.52905 * 113.66146 * 205.00480 * 10 9 7 25 25 C 1.52909 * 121.13795 * 346.34483 * 24 10 9 26 26 C 1.53958 * 86.78048 * 100.81966 * 25 24 10 27 27 C 1.52914 * 121.13822 * 94.90759 * 24 10 9 28 28 H 1.08996 * 109.47035 * 301.89244 * 1 2 3 29 29 H 1.08997 * 109.46581 * 61.88643 * 1 2 3 30 30 H 1.09001 * 109.47423 * 181.88750 * 1 2 3 31 31 H 1.09003 * 109.47056 * 239.99565 * 2 1 3 32 32 H 1.09001 * 109.46436 * 119.99911 * 2 1 3 33 33 H 1.08993 * 109.47581 * 181.54804 * 3 2 1 34 34 H 1.09004 * 109.47418 * 54.97464 * 4 3 2 35 35 H 1.08996 * 109.47314 * 174.97986 * 4 3 2 36 36 H 1.09006 * 109.47461 * 185.79725 * 5 4 3 37 37 H 1.09000 * 109.47639 * 305.79639 * 5 4 3 38 38 H 1.09000 * 109.47204 * 65.79873 * 5 4 3 39 39 H 1.08998 * 109.47739 * 305.00505 * 6 3 2 40 40 H 1.08996 * 109.46935 * 185.00000 * 6 3 2 41 41 H 0.96989 * 120.00055 * 0.02562 * 9 7 6 42 42 H 1.09009 * 113.57715 * 24.59571 * 12 10 9 43 43 H 1.08998 * 113.57925 * 253.80732 * 12 10 9 44 44 H 0.96999 * 120.00041 * 287.81497 * 15 13 12 45 45 H 0.97003 * 119.99989 * 180.02562 * 19 18 16 46 46 H 1.09000 * 113.66856 * 215.29376 * 25 24 10 47 47 H 1.09004 * 113.66389 * 346.35433 * 25 24 10 48 48 H 1.08997 * 113.58307 * 270.13096 * 26 25 24 49 49 H 1.08999 * 113.64881 * 139.34973 * 26 25 24 50 50 H 1.08993 * 113.65912 * 13.65852 * 27 24 10 51 51 H 1.09005 * 113.66084 * 144.61550 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 1.4986 2.1748 -1.2293 5 6 2.0771 1.5414 -2.4962 6 6 1.5622 2.1524 1.2682 7 6 2.1940 1.5061 2.4741 8 8 2.9516 0.5695 2.3331 9 7 1.9172 1.9689 3.7093 10 6 2.5318 1.3409 4.8815 11 1 2.8415 0.3119 4.6991 12 6 3.6190 2.2047 5.5464 13 6 3.0452 1.7540 6.9020 14 1 2.9975 2.5502 7.6450 15 7 3.6553 0.5271 7.4201 16 6 4.5038 0.5847 8.4934 17 1 4.7265 1.5352 8.9552 18 6 5.0775 -0.5786 8.9878 19 7 4.8063 -1.7370 8.4248 20 14 6.2343 -0.5001 10.4524 21 1 5.5163 0.0703 11.6204 22 1 6.7089 -1.8680 10.7823 23 1 7.3980 0.3598 10.1184 24 6 1.7245 1.5200 6.1677 25 6 0.5835 2.5345 6.2503 26 6 -0.3732 1.3441 6.0559 27 6 0.7375 0.4505 6.6371 28 1 -0.3633 0.5429 0.8725 29 1 -0.3632 0.4843 -0.9064 30 1 -0.3634 -1.0271 0.0338 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.1297 1.4425 -0.0278 34 1 0.4115 2.0979 -1.2485 35 1 1.7878 3.2247 -1.1834 36 1 1.7742 2.1255 -3.3654 37 1 3.1650 1.5255 -2.4304 38 1 1.7041 0.5220 -2.5956 39 1 0.4774 2.0750 1.3411 40 1 1.8495 3.2030 1.2267 41 1 1.3110 2.7176 3.8221 42 1 3.5040 3.2721 5.3573 43 1 4.6324 1.8484 5.3618 44 1 3.4552 -0.3266 7.0053 45 1 5.2069 -2.5499 8.7706 46 1 0.4935 3.0135 7.2252 47 1 0.5699 3.2459 5.4244 48 1 -0.6004 1.1332 5.0110 49 1 -1.2649 1.3932 6.6809 50 1 0.8473 -0.5029 6.1205 51 1 0.6921 0.3426 7.7209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203546662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:08 Heat of formation + Delta-G solvation = -24.949653 kcal Electronic energy + Delta-G solvation = -26650.752955 eV Core-core repulsion = 23164.073183 eV Total energy + Delta-G solvation = -3486.679773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.95757 -40.45581 -37.87292 -36.55688 -35.46217 -34.09107 -32.09038 -31.69687 -30.60843 -26.79622 -26.68973 -25.79128 -25.32577 -24.47896 -23.94230 -21.49238 -21.43922 -20.01034 -19.43605 -18.93879 -17.77307 -17.22293 -16.94187 -16.77485 -16.27465 -16.14615 -15.83137 -15.36528 -15.12001 -14.80815 -14.48789 -14.20933 -13.94074 -13.72005 -13.51994 -13.33697 -13.29594 -13.14911 -12.95730 -12.80459 -12.79523 -12.72966 -12.54849 -12.25272 -12.23152 -11.99119 -11.93418 -11.78717 -11.40988 -11.35235 -11.33083 -11.19375 -11.14764 -10.96179 -10.65373 -10.49610 -9.83806 -8.99650 -7.95643 -5.24775 1.45092 1.48753 1.54704 1.74984 2.29840 2.54068 3.35701 3.43226 3.51614 3.77923 3.81148 3.85934 3.93070 3.99151 4.05624 4.20105 4.21611 4.29122 4.44082 4.46697 4.58197 4.60110 4.64011 4.66002 4.71376 4.76525 4.80893 4.90908 4.96956 4.98317 5.01216 5.03448 5.11299 5.12334 5.13155 5.17919 5.23599 5.29753 5.33974 5.36971 5.42519 5.44681 5.51049 5.54463 5.60375 5.71127 5.78919 6.26062 6.70800 7.30985 7.42488 8.08362 8.30380 9.27647 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.003128 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.464938 B = 8949.688221 C = 9585.912254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.070 4.070 4 C -0.115 4.115 5 C -0.155 4.155 6 C -0.131 4.131 7 C 0.501 3.499 8 O -0.588 6.588 9 N -0.702 5.702 10 C 0.163 3.837 11 H 0.065 0.935 12 C -0.172 4.172 13 C 0.165 3.835 14 H 0.072 0.928 15 N -0.716 5.716 16 C -0.241 4.241 17 H 0.080 0.920 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.279 1.279 24 C -0.118 4.118 25 C -0.092 4.092 26 C -0.121 4.121 27 C -0.129 4.129 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.415 0.585 42 H 0.104 0.896 43 H 0.033 0.967 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.037 0.963 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.024 14.058 -17.726 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.089 4.089 4 C -0.152 4.152 5 C -0.212 4.212 6 C -0.170 4.170 7 C 0.290 3.710 8 O -0.468 6.468 9 N -0.355 5.355 10 C 0.058 3.942 11 H 0.083 0.917 12 C -0.214 4.214 13 C 0.054 3.946 14 H 0.090 0.910 15 N -0.353 5.353 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.199 1.199 22 H -0.225 1.225 23 H -0.205 1.205 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.158 4.158 27 C -0.167 4.167 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.253 0.747 42 H 0.122 0.878 43 H 0.052 0.948 44 H 0.202 0.798 45 H 0.059 0.941 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.056 0.944 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.385 13.459 -17.665 26.459 hybrid contribution 1.138 -1.029 0.941 1.799 sum -13.247 12.430 -16.724 24.692 Atomic orbital electron populations 1.21869 0.94761 1.01506 1.02557 1.21625 0.96850 0.96825 1.01290 1.20906 0.99453 0.94791 0.93773 1.21604 1.01498 0.99407 0.92688 1.21806 1.00505 1.01044 0.97830 1.21888 1.03096 1.01621 0.90402 1.21580 0.80796 0.82952 0.85671 1.90695 1.38563 1.30799 1.86713 1.45917 1.48539 1.36202 1.04820 1.21637 0.93502 0.96102 0.82995 0.91709 1.24176 0.97426 1.00269 0.99499 1.21104 0.91931 0.89032 0.92503 0.91000 1.42238 1.53132 1.04425 1.35498 1.19656 1.18349 0.93482 1.05826 0.90209 1.25609 1.03259 0.95158 1.02955 1.69842 1.49541 0.97962 1.44872 0.85187 0.78900 0.76038 0.79492 1.19944 1.22462 1.20525 1.23412 0.94022 0.99855 0.94756 1.22527 0.91619 0.95384 1.03447 1.22783 0.96454 0.95261 1.01351 1.22571 0.97319 0.96695 1.00092 0.92317 0.90680 0.93640 0.92441 0.93827 0.93250 0.90029 0.90830 0.91608 0.93799 0.92944 0.86141 0.86332 0.74668 0.87804 0.94835 0.79758 0.94121 0.88748 0.88838 0.89647 0.90109 0.94368 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.21 71.98 0.66 -1.81 16 2 C -0.13 -2.83 5.18 30.59 0.16 -2.67 16 3 C -0.07 -1.32 1.81 -10.79 -0.02 -1.34 16 4 C -0.11 -1.43 5.15 30.59 0.16 -1.27 16 5 C -0.15 -2.07 9.52 71.98 0.69 -1.38 16 6 C -0.13 -2.11 4.99 29.85 0.15 -1.96 16 7 C 0.50 13.47 7.54 87.66 0.66 14.13 16 8 O -0.59 -22.59 13.57 -3.04 -0.04 -22.63 16 9 N -0.70 -16.94 5.28 -441.15 -2.33 -19.27 16 10 C 0.16 5.49 4.03 45.28 0.18 5.68 16 11 H 0.06 2.87 7.47 -2.38 -0.02 2.85 16 12 C -0.17 -6.12 7.68 31.23 0.24 -5.89 16 13 C 0.17 6.51 4.36 45.28 0.20 6.70 16 14 H 0.07 2.73 8.10 -2.38 -0.02 2.71 16 15 N -0.72 -37.16 5.09 -321.57 -1.64 -38.80 16 16 C -0.24 -13.65 9.97 84.03 0.84 -12.81 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 19 N -0.97 -61.74 13.06 21.65 0.28 -61.45 16 20 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 C -0.12 -3.64 0.92 -52.31 -0.05 -3.68 16 25 C -0.09 -1.88 7.47 30.89 0.23 -1.65 16 26 C -0.12 -2.60 8.08 31.23 0.25 -2.35 16 27 C -0.13 -4.17 7.49 30.89 0.23 -3.94 16 28 H 0.06 0.89 6.27 -2.39 -0.01 0.87 16 29 H 0.07 0.92 6.39 -2.39 -0.02 0.91 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 1.24 6.77 -2.39 -0.02 1.22 16 32 H 0.04 1.32 5.92 -2.39 -0.01 1.31 16 33 H 0.05 1.20 7.95 -2.39 -0.02 1.18 16 34 H 0.08 0.80 6.17 -2.38 -0.01 0.78 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.74 6.89 -2.39 -0.02 0.72 16 39 H 0.12 1.34 6.18 -2.39 -0.01 1.33 16 40 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.41 6.56 6.72 -92.72 -0.62 5.93 16 42 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 43 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.37 21.26 7.81 -92.71 -0.72 20.53 16 45 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.09 1.31 6.42 -2.39 -0.02 1.29 16 48 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -74.58 389.70 2.92 -71.67 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -0.43 Total: 39.62 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.05 Total: -18.37 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -3.68 Total: -119.52 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.04 Total: -22.63 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -74.58 2.92 -71.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203546662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.716 kcal (2) G-P(sol) polarization free energy of solvation -74.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds