Wall clock time and date at job start Fri Apr 10 2020 22:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47595 * 2 1 4 4 C 1.53004 * 109.47359 * 120.00433 * 2 1 3 5 5 H 1.09006 * 109.46742 * 299.99859 * 4 2 1 6 6 C 1.52994 * 109.47359 * 179.97438 * 4 2 1 7 7 C 1.52998 * 109.47466 * 179.97438 * 6 4 2 8 8 C 1.53008 * 109.46885 * 59.99980 * 7 6 4 9 9 C 1.53004 * 109.46612 * 299.99999 * 8 7 6 10 10 C 1.52994 * 109.47152 * 60.00374 * 9 8 7 11 11 H 1.09007 * 109.46926 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.47499 * 59.99682 * 10 9 8 13 13 C 1.34780 * 120.00287 * 84.99347 * 12 10 9 14 14 O 1.21587 * 119.99921 * 0.02562 * 13 12 10 15 15 N 1.34771 * 120.00262 * 180.02562 * 13 12 10 16 16 C 1.46505 * 120.00388 * 180.02562 * 15 13 12 17 17 C 1.52994 * 109.47409 * 181.14872 * 16 15 13 18 18 C 1.50699 * 115.55045 * 39.67738 * 17 16 15 19 19 H 1.07995 * 120.00647 * 264.52915 * 18 17 16 20 20 C 1.37880 * 119.99507 * 84.53671 * 18 17 16 21 21 N 1.31516 * 120.00080 * 352.92174 * 20 18 17 22 22 Si 1.86798 * 119.99753 * 172.92591 * 20 18 17 23 23 H 1.48500 * 109.47316 * 89.99741 * 22 20 18 24 24 H 1.48508 * 109.46898 * 209.99893 * 22 20 18 25 25 H 1.48501 * 109.47180 * 329.99294 * 22 20 18 26 26 C 1.53002 * 117.49651 * 253.97480 * 17 16 15 27 27 C 1.52996 * 117.49795 * 185.35356 * 17 16 15 28 28 H 1.09006 * 109.47079 * 299.99914 * 1 2 3 29 29 H 1.09000 * 109.47100 * 59.99783 * 1 2 3 30 30 H 1.08996 * 109.47537 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47079 * 240.00086 * 2 1 3 32 32 H 1.08996 * 109.47797 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46833 * 300.00674 * 3 2 1 34 34 H 1.09006 * 109.46837 * 59.99938 * 3 2 1 35 35 H 1.09006 * 109.47079 * 299.99653 * 6 4 2 36 36 H 1.09005 * 109.47395 * 59.99250 * 6 4 2 37 37 H 1.08996 * 109.47599 * 179.97438 * 7 6 4 38 38 H 1.08994 * 109.47133 * 300.00427 * 7 6 4 39 39 H 1.08991 * 109.47091 * 59.99807 * 8 7 6 40 40 H 1.09000 * 109.47121 * 180.02562 * 8 7 6 41 41 H 1.08994 * 109.47737 * 299.99756 * 9 8 7 42 42 H 1.09007 * 109.46849 * 180.02562 * 9 8 7 43 43 H 0.97006 * 120.00230 * 265.00020 * 12 10 9 44 44 H 0.97006 * 120.00255 * 0.02562 * 15 13 12 45 45 H 1.08996 * 109.47039 * 301.15281 * 16 15 13 46 46 H 1.08997 * 109.46827 * 61.14627 * 16 15 13 47 47 H 0.97003 * 119.99993 * 185.03575 * 21 20 18 48 48 H 1.09001 * 117.50250 * 359.97438 * 26 17 16 49 49 H 1.09001 * 117.50017 * 145.02481 * 26 17 16 50 50 H 1.09003 * 117.49675 * 214.97548 * 27 17 16 51 51 H 1.08999 * 117.50382 * 359.97334 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7219 1.2489 7 6 4.0800 -1.4427 2.4983 8 6 3.5695 -2.8851 2.4992 9 6 2.0395 -2.8844 2.4996 10 6 1.5295 -2.1636 1.2501 11 1 0.4394 -2.1635 1.2502 12 7 2.0172 -2.8550 0.0542 13 6 1.3399 -3.9119 -0.4366 14 8 0.3239 -4.2912 0.1130 15 7 1.7889 -4.5482 -1.5365 16 6 1.0524 -5.6967 -2.0704 17 6 1.7850 -6.2478 -3.2952 18 6 3.2884 -6.2763 -3.1951 19 1 3.8724 -5.4643 -3.6026 20 6 3.9185 -7.3392 -2.5833 21 7 3.2082 -8.2576 -1.9655 22 14 5.7809 -7.4747 -2.6318 23 1 6.3589 -6.7761 -1.4557 24 1 6.1740 -8.9064 -2.5997 25 1 6.2904 -6.8494 -3.8787 26 6 1.1733 -5.9678 -4.6694 27 6 1.1074 -7.3761 -4.0752 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9329 -1.2360 0.3588 36 1 3.9337 0.3056 1.2486 37 1 5.1700 -1.4435 2.4979 38 1 3.7171 -0.9283 3.3881 39 1 3.9324 -3.3994 1.6094 40 1 3.9325 -3.3984 3.3895 41 1 1.6765 -2.3700 3.3893 42 1 1.6757 -3.9120 2.5006 43 1 2.8277 -2.5522 -0.3845 44 1 2.5998 -4.2458 -1.9748 45 1 0.9860 -6.4722 -1.3073 46 1 0.0490 -5.3830 -2.3578 47 1 3.6532 -8.9652 -1.4732 48 1 0.2487 -5.3913 -4.7008 49 1 1.8583 -5.8041 -5.5014 50 1 1.7491 -8.1390 -4.5163 51 1 0.1399 -7.7262 -3.7155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331829860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:56 Heat of formation + Delta-G solvation = -41.535269 kcal Electronic energy + Delta-G solvation = -27297.189829 eV Core-core repulsion = 23809.790850 eV Total energy + Delta-G solvation = -3487.398979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.29042 -38.37035 -36.61374 -35.06718 -33.25281 -33.01358 -32.00004 -30.14033 -28.98976 -27.20351 -25.98660 -25.07210 -23.09415 -22.29320 -21.15999 -20.66319 -19.93531 -19.43348 -18.79954 -17.66516 -16.27435 -15.66926 -15.44522 -15.22233 -14.69410 -14.40546 -14.24635 -14.05578 -13.64393 -13.62978 -13.36817 -13.23020 -12.95416 -12.61967 -12.32048 -12.25715 -12.17103 -11.93417 -11.70004 -11.57795 -11.31165 -11.12498 -11.08442 -11.02978 -10.92122 -10.66641 -10.53771 -10.50154 -10.21855 -10.09956 -9.81358 -9.65581 -9.38820 -8.92162 -8.61561 -8.49837 -8.23896 -7.75102 -6.08959 -4.17934 3.22595 3.31660 3.33043 3.43576 3.98865 4.32873 4.54642 4.57560 4.72736 4.93819 5.01515 5.09936 5.16071 5.21190 5.27167 5.35290 5.37544 5.46158 5.53321 5.57520 5.61654 5.64914 5.71191 5.79432 5.85920 5.89908 5.99794 6.05684 6.08648 6.09246 6.18414 6.26668 6.32720 6.35286 6.38600 6.45198 6.47761 6.53303 6.62848 6.75501 6.95772 7.05058 7.12149 7.39047 7.44149 7.55667 7.76948 7.79339 8.35163 8.82327 8.89482 9.41302 9.49010 10.98669 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.013951 B = 0.004286 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.543922 B = 6530.621913 C = 7358.078450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.088 4.088 5 H 0.080 0.920 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.132 4.132 10 C 0.172 3.828 11 H 0.088 0.912 12 N -0.743 5.743 13 C 0.698 3.302 14 O -0.610 6.610 15 N -0.714 5.714 16 C 0.185 3.815 17 C 0.029 3.971 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.078 3.922 21 N -0.869 5.869 22 Si 0.887 3.113 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.211 4.211 27 C -0.152 4.152 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.390 0.610 44 H 0.399 0.601 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 16.558 6.553 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.107 4.107 5 H 0.098 0.902 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.157 4.157 9 C -0.171 4.171 10 C 0.066 3.934 11 H 0.106 0.894 12 N -0.400 5.400 13 C 0.398 3.602 14 O -0.490 6.490 15 N -0.367 5.367 16 C 0.061 3.939 17 C 0.028 3.972 18 C -0.540 4.540 19 H 0.077 0.923 20 C -0.127 4.127 21 N -0.504 5.504 22 Si 0.714 3.286 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.248 4.248 27 C -0.190 4.190 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.225 0.775 44 H 0.234 0.766 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.858 15.955 7.081 17.477 hybrid contribution 1.827 -0.062 -0.344 1.860 sum 0.969 15.893 6.737 17.289 Atomic orbital electron populations 1.21882 0.95208 1.02404 1.01203 1.21107 0.95918 0.95658 0.98229 1.21901 1.01026 0.96148 1.01434 1.21489 0.95628 0.94932 0.98620 0.90182 1.21649 0.94955 1.00459 0.98393 1.21535 0.99984 0.96125 0.97870 1.21494 0.95822 0.96246 1.02097 1.21948 0.95764 1.01835 0.97506 1.20698 0.99267 0.89525 0.83927 0.89450 1.45174 1.30028 1.33694 1.31150 1.16062 0.83239 0.79911 0.81022 1.90838 1.26748 1.68863 1.62579 1.45108 1.30103 1.33260 1.28246 1.20659 0.91236 0.85824 0.96205 1.19043 0.94210 0.97563 0.86343 1.20255 0.88560 1.05649 1.39548 0.92268 1.24969 0.97742 0.95159 0.94823 1.69982 1.35117 1.14207 1.31101 0.86685 0.86012 0.77431 0.78428 1.20699 1.21178 1.19816 1.23078 1.01264 1.00473 1.00009 1.22489 1.00174 0.91144 1.05232 0.93018 0.93017 0.91867 0.90886 0.92486 0.92961 0.92948 0.91945 0.91606 0.92265 0.92253 0.91532 0.92461 0.91831 0.91142 0.77512 0.76607 0.91849 0.95008 0.92877 0.91630 0.90494 0.89988 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.84 37.15 0.33 -1.24 16 2 C -0.09 -0.88 2.35 -90.62 -0.21 -1.10 16 3 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16 4 C -0.09 -0.86 1.57 -90.62 -0.14 -1.00 16 5 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 6 C -0.12 -1.07 4.68 -26.74 -0.13 -1.20 16 7 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 8 C -0.12 -1.42 5.77 -26.73 -0.15 -1.57 16 9 C -0.13 -1.71 5.60 -26.73 -0.15 -1.86 16 10 C 0.17 2.22 1.88 -67.94 -0.13 2.09 16 11 H 0.09 1.30 5.86 -51.93 -0.30 0.99 16 12 N -0.74 -11.00 3.54 -58.68 -0.21 -11.21 16 13 C 0.70 13.73 8.53 -86.92 -0.74 12.99 16 14 O -0.61 -14.18 16.00 5.29 0.08 -14.10 16 15 N -0.71 -14.64 5.34 -65.23 -0.35 -14.99 16 16 C 0.19 4.28 5.75 -4.04 -0.02 4.25 16 17 C 0.03 0.69 1.70 -155.66 -0.27 0.42 16 18 C -0.50 -12.63 7.44 -34.44 -0.26 -12.89 16 19 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 20 C 0.08 2.03 5.39 -17.82 -0.10 1.94 16 21 N -0.87 -23.94 12.97 55.43 0.72 -23.22 16 22 Si 0.89 20.19 29.55 -169.99 -5.02 15.17 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.21 -4.45 9.88 -26.73 -0.26 -4.71 16 27 C -0.15 -3.50 9.51 -26.73 -0.25 -3.75 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 31 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 32 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.61 6.51 -51.93 -0.34 0.27 16 36 H 0.07 0.53 6.43 -51.93 -0.33 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.91 7.60 -51.93 -0.39 0.52 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.39 5.11 6.67 -40.82 -0.27 4.83 16 44 H 0.40 7.74 7.47 -40.82 -0.30 7.43 16 45 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 46 H 0.03 0.72 7.94 -51.93 -0.41 0.31 16 47 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 48 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 49 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 50 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 51 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -28.72 389.37 -10.52 -39.24 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -9.30 Total: 13.04 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.31 Total: -9.79 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.16 Total: -49.42 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.08 Total: -14.10 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.72 -10.52 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331829860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.293 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds