Wall clock time and date at job start Fri Apr 10 2020 22:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47011 * 2 1 4 4 C 1.52993 * 109.47165 * 120.00289 * 2 1 3 5 5 N 1.46503 * 109.46857 * 173.95675 * 4 2 1 6 6 C 1.34776 * 120.00150 * 95.75134 * 5 4 2 7 7 O 1.21584 * 120.00431 * 185.19147 * 6 5 4 8 8 N 1.34777 * 119.99741 * 5.18971 * 6 5 4 9 9 C 1.46504 * 119.99690 * 185.09038 * 8 6 5 10 10 C 1.53006 * 109.46916 * 184.99680 * 9 8 6 11 11 C 1.50695 * 115.55136 * 65.16248 * 10 9 8 12 12 H 1.07997 * 120.00030 * 276.93398 * 11 10 9 13 13 C 1.37876 * 119.99923 * 96.66390 * 11 10 9 14 14 N 1.31522 * 120.00067 * 173.50514 * 13 11 10 15 15 Si 1.86802 * 120.00137 * 353.49981 * 13 11 10 16 16 H 1.48497 * 109.46692 * 94.40758 * 15 13 11 17 17 H 1.48501 * 109.47184 * 214.40983 * 15 13 11 18 18 H 1.48504 * 109.47103 * 334.40876 * 15 13 11 19 19 C 1.53000 * 117.51471 * 210.86552 * 10 9 8 20 20 C 1.52998 * 59.99999 * 107.47847 * 19 10 9 21 21 C 1.46499 * 119.99864 * 275.74417 * 5 4 2 22 22 C 1.54262 * 110.03450 * 237.91060 * 21 5 4 23 23 C 1.54971 * 104.16068 * 217.14200 * 22 21 5 24 24 C 1.54886 * 102.77966 * 37.88361 * 23 22 21 25 25 C 1.53880 * 110.03024 * 120.69423 * 21 5 4 26 26 H 1.08998 * 109.46532 * 304.92051 * 1 2 3 27 27 H 1.09001 * 109.47120 * 64.91762 * 1 2 3 28 28 H 1.09003 * 109.46850 * 184.92346 * 1 2 3 29 29 H 1.09007 * 109.46549 * 240.00306 * 2 1 3 30 30 H 1.08998 * 109.47261 * 175.86566 * 3 2 1 31 31 H 1.08999 * 109.47050 * 295.85967 * 3 2 1 32 32 H 1.08996 * 109.47259 * 55.85912 * 3 2 1 33 33 H 1.09004 * 109.47515 * 53.95656 * 4 2 1 34 34 H 1.08998 * 109.47160 * 293.95510 * 4 2 1 35 35 H 0.96998 * 120.00561 * 5.08332 * 8 6 5 36 36 H 1.09001 * 109.47478 * 64.99606 * 9 8 6 37 37 H 1.09005 * 109.47042 * 304.99110 * 9 8 6 38 38 H 0.96996 * 119.99877 * 174.99274 * 14 13 11 39 39 H 1.09002 * 117.49723 * 214.96471 * 19 10 9 40 40 H 1.08998 * 117.50178 * 359.97438 * 19 10 9 41 41 H 1.09002 * 117.49953 * 252.50848 * 20 19 10 42 42 H 1.09000 * 117.51695 * 107.47729 * 20 19 10 43 43 H 1.08995 * 110.02089 * 359.30277 * 21 5 4 44 44 H 1.09002 * 110.48543 * 335.78673 * 22 21 5 45 45 H 1.08992 * 110.48920 * 98.42921 * 22 21 5 46 46 H 1.09001 * 110.71145 * 279.57097 * 23 22 21 47 47 H 1.09000 * 110.92465 * 156.29930 * 23 22 21 48 48 H 1.08992 * 110.49115 * 203.40597 * 24 23 22 49 49 H 1.09000 * 110.59722 * 80.81864 * 24 23 22 50 50 H 1.08996 * 110.02941 * 238.57131 * 25 21 5 51 51 H 1.09000 * 110.03162 * 359.95192 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.4978 -0.8485 1.1786 6 6 4.2839 0.0586 1.7916 7 8 5.4910 0.0081 1.6552 8 7 3.7318 1.0218 2.5558 9 6 4.5744 2.0732 3.1311 10 6 3.7292 2.9589 4.0488 11 6 3.1760 2.2821 5.2763 12 1 2.2646 1.7064 5.2111 13 6 3.8364 2.3933 6.4815 14 7 3.2906 1.9125 7.5773 15 14 5.5065 3.2266 6.5580 16 1 5.3297 4.6577 6.9126 17 1 6.3449 2.5614 7.5875 18 1 6.1725 3.1231 5.2347 19 6 4.1267 4.4312 4.1724 20 6 2.8705 4.0410 3.3911 21 6 4.1012 -1.9617 0.4418 22 6 5.0104 -2.7841 1.3781 23 6 6.2058 -3.1946 0.4814 24 6 6.4263 -1.9354 -0.3931 25 6 5.0008 -1.4226 -0.6842 26 1 -0.3632 0.5883 0.8426 27 1 -0.3633 0.4357 -0.9308 28 1 -0.3633 -1.0239 0.0882 29 1 1.8933 -0.5138 -0.8901 30 1 3.1275 1.4434 0.0741 31 1 1.7385 1.9344 -0.9248 32 1 1.6174 1.9773 0.8505 33 1 1.5911 -1.7130 1.3049 34 1 1.7678 -0.1488 2.1358 35 1 2.7767 1.0190 2.7248 36 1 4.9972 2.6792 2.3298 37 1 5.3805 1.6184 3.7069 38 1 3.7854 1.9253 8.4114 39 1 3.9881 4.9103 5.1416 40 1 4.9908 4.7690 3.6002 41 1 2.9079 4.1221 2.3048 42 1 1.9052 4.2631 3.8462 43 1 3.3216 -2.5988 0.0241 44 1 5.3523 -2.1717 2.2125 45 1 4.4846 -3.6668 1.7419 46 1 5.9466 -4.0539 -0.1370 47 1 7.0894 -3.4064 1.0835 48 1 6.9336 -2.1993 -1.3209 49 1 6.9977 -1.1847 0.1528 50 1 4.6583 -1.7987 -1.6481 51 1 4.9878 -0.3326 -0.6829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431188739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:15 Heat of formation + Delta-G solvation = -32.392012 kcal Electronic energy + Delta-G solvation = -27850.875874 eV Core-core repulsion = 24363.873376 eV Total energy + Delta-G solvation = -3487.002498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63872 -39.20234 -38.04125 -37.53935 -34.73804 -34.23389 -34.05042 -29.54319 -29.21273 -28.24632 -27.91741 -27.25540 -26.10996 -23.42618 -22.28209 -21.66353 -21.28431 -20.94767 -20.08450 -18.71956 -18.22069 -17.39534 -16.93531 -16.60599 -16.32453 -15.93344 -15.72510 -15.32019 -15.02115 -14.83944 -14.71982 -14.49570 -14.35965 -14.03623 -13.74512 -13.67637 -13.12551 -13.04534 -12.86958 -12.81014 -12.64662 -12.47530 -12.17127 -11.96010 -11.95339 -11.90525 -11.82679 -11.80879 -11.72688 -11.64582 -11.49011 -11.33898 -10.90230 -10.85029 -10.64898 -10.34589 -9.89925 -9.27594 -8.31277 -6.35376 1.30825 1.38303 1.49918 1.82282 2.33445 2.35691 2.96435 3.04122 3.36038 3.75980 3.77296 3.88985 4.02768 4.06198 4.09315 4.22147 4.36227 4.41063 4.47411 4.51730 4.54298 4.60881 4.67844 4.69304 4.72389 4.81452 4.82764 4.84126 4.86876 4.92673 4.98767 5.06526 5.08727 5.08970 5.11936 5.17887 5.28430 5.31047 5.33453 5.35969 5.47866 5.48832 5.52290 5.59318 5.70086 5.76462 5.91255 6.11009 6.27392 6.71284 7.19233 7.33785 7.78980 8.83691 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.004990 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.799585 B = 5609.658928 C = 6619.318631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.144 4.144 4 C 0.108 3.892 5 N -0.621 5.621 6 C 0.701 3.299 7 O -0.623 6.623 8 N -0.722 5.722 9 C 0.191 3.809 10 C -0.037 4.037 11 C -0.473 4.473 12 H 0.044 0.956 13 C 0.026 3.974 14 N -0.944 5.944 15 Si 0.931 3.069 16 H -0.267 1.267 17 H -0.305 1.305 18 H -0.246 1.246 19 C -0.195 4.195 20 C -0.150 4.150 21 C 0.162 3.838 22 C -0.137 4.137 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.118 4.118 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.401 0.599 36 H 0.049 0.951 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.038 0.962 50 H 0.085 0.915 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -7.081 -19.797 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.201 4.201 4 C -0.015 4.015 5 N -0.356 5.356 6 C 0.403 3.597 7 O -0.504 6.504 8 N -0.378 5.378 9 C 0.066 3.934 10 C -0.038 4.038 11 C -0.511 4.511 12 H 0.063 0.937 13 C -0.172 4.172 14 N -0.584 5.584 15 Si 0.757 3.243 16 H -0.193 1.193 17 H -0.233 1.233 18 H -0.170 1.170 19 C -0.233 4.233 20 C -0.188 4.188 21 C 0.059 3.941 22 C -0.175 4.175 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.157 4.157 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.138 0.862 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.057 0.943 50 H 0.104 0.896 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.272 -7.059 -19.698 21.047 hybrid contribution 0.511 0.558 1.255 1.465 sum -1.761 -6.500 -18.443 19.634 Atomic orbital electron populations 1.21760 0.93202 1.02657 1.02296 1.21464 0.96734 0.95879 0.98085 1.21824 0.99914 0.96630 1.01779 1.21862 0.78912 1.02398 0.98293 1.47308 1.06106 1.27094 1.55120 1.16022 0.85015 0.79709 0.79003 1.90831 1.13984 1.76737 1.68893 1.45148 1.11884 1.28266 1.52525 1.20559 0.91750 0.87592 0.93525 1.19468 1.00222 0.87579 0.96522 1.20327 1.09102 1.30789 0.90871 0.93743 1.25692 1.00622 0.95879 0.95018 1.70026 1.38424 1.49581 1.00327 0.86033 0.80977 0.78793 0.78482 1.19259 1.23260 1.16957 1.22963 0.99992 0.98645 1.01661 1.22875 0.94395 1.03301 0.98185 1.21740 0.95722 0.85791 0.90880 1.22742 0.97243 0.99104 0.98454 1.22368 0.97136 0.97835 0.97543 1.22196 0.96832 0.97019 0.99281 1.22363 0.95237 0.99953 0.98113 0.92954 0.91718 0.91269 0.90213 0.94897 0.92026 0.93090 0.88225 0.91831 0.76167 0.93325 0.95381 0.92731 0.90475 0.88320 0.87965 0.89667 0.86206 0.94316 0.90524 0.89113 0.92710 0.90801 0.94279 0.89601 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.19 71.98 0.66 -1.37 16 2 C -0.10 -1.83 3.11 -10.80 -0.03 -1.86 16 3 C -0.14 -3.19 8.33 71.98 0.60 -2.59 16 4 C 0.11 2.33 4.85 86.38 0.42 2.74 16 5 N -0.62 -16.94 2.23 -811.69 -1.81 -18.75 16 6 C 0.70 25.58 5.59 179.05 1.00 26.58 16 7 O -0.62 -26.74 12.30 -3.98 -0.05 -26.79 16 8 N -0.72 -27.18 4.57 -478.51 -2.19 -29.36 16 9 C 0.19 8.06 5.33 86.38 0.46 8.52 16 10 C -0.04 -1.60 0.87 -52.93 -0.05 -1.64 16 11 C -0.47 -25.48 9.34 25.60 0.24 -25.24 16 12 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 13 C 0.03 1.46 5.46 84.65 0.46 1.93 16 14 N -0.94 -58.03 13.95 21.45 0.30 -57.73 16 15 Si 0.93 45.33 24.73 68.60 1.70 47.03 16 16 H -0.27 -12.33 7.02 99.48 0.70 -11.63 16 17 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 18 H -0.25 -11.41 6.19 99.48 0.62 -10.80 16 19 C -0.19 -7.70 7.31 30.59 0.22 -7.47 16 20 C -0.15 -5.43 9.95 30.59 0.30 -5.13 16 21 C 0.16 3.74 3.36 45.72 0.15 3.89 16 22 C -0.14 -3.56 6.10 31.70 0.19 -3.36 16 23 C -0.11 -2.48 6.91 31.91 0.22 -2.26 16 24 C -0.12 -2.87 6.39 31.67 0.20 -2.67 16 25 C -0.12 -2.78 5.76 31.32 0.18 -2.60 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.03 0.90 6.26 -2.39 -0.01 0.88 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 1.66 8.05 -2.38 -0.02 1.64 16 34 H 0.06 1.59 5.87 -2.39 -0.01 1.57 16 35 H 0.40 14.28 5.86 -92.71 -0.54 13.73 16 36 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 37 H 0.03 1.36 7.59 -2.38 -0.02 1.34 16 38 H 0.26 15.43 8.32 -92.71 -0.77 14.66 16 39 H 0.08 3.26 6.49 -2.39 -0.02 3.25 16 40 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.08 3.13 8.14 -2.39 -0.02 3.12 16 43 H 0.12 1.92 7.90 -2.39 -0.02 1.90 16 44 H 0.04 1.37 6.28 -2.39 -0.01 1.36 16 45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.04 1.27 7.23 -2.39 -0.02 1.25 16 50 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.04 1.27 6.99 -2.39 -0.02 1.25 16 Total: -1.00 -68.09 382.91 3.43 -64.65 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.24 Total: 33.50 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 5.24 Total: -12.54 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -3.70 Total: -105.85 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.70 Total: 47.03 kcal Total: -68.09 3.43 -64.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431188739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.262 kcal (2) G-P(sol) polarization free energy of solvation -68.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds