Wall clock time and date at job start Fri Apr 10 2020 22:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 H 1.08997 * 109.47358 * 305.00186 * 3 2 1 5 5 C 1.53010 * 109.47081 * 64.99843 * 3 2 1 6 6 C 1.52996 * 109.47081 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47307 * 299.99919 * 6 5 3 8 8 C 1.53003 * 109.46755 * 60.00139 * 7 6 5 9 9 C 1.52998 * 109.47364 * 299.99719 * 8 7 6 10 10 H 1.09001 * 109.47317 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47253 * 300.00550 * 9 8 7 12 12 N 1.46506 * 109.46948 * 294.99738 * 11 9 8 13 13 C 1.34775 * 119.99969 * 179.97438 * 12 11 9 14 14 O 1.21593 * 120.00093 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00044 * 180.02562 * 13 12 11 16 16 C 1.46506 * 120.00266 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47075 * 176.92939 * 16 15 13 18 18 C 1.50702 * 115.54987 * 294.82902 * 17 16 15 19 19 H 1.07994 * 119.99824 * 99.42400 * 18 17 16 20 20 C 1.37877 * 119.99813 * 279.69594 * 18 17 16 21 21 N 1.31512 * 120.00299 * 5.49064 * 20 18 17 22 22 Si 1.86795 * 119.99542 * 185.49077 * 20 18 17 23 23 H 1.48495 * 109.47418 * 60.00128 * 22 20 18 24 24 H 1.48505 * 109.47331 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47369 * 299.99744 * 22 20 18 26 26 C 1.52997 * 117.51717 * 80.53472 * 17 16 15 27 27 C 1.52996 * 117.49335 * 149.16311 * 17 16 15 28 28 H 1.08997 * 109.47599 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47413 * 299.99752 * 1 2 3 30 30 H 1.09004 * 109.46969 * 59.99974 * 1 2 3 31 31 H 1.09002 * 109.47062 * 239.99858 * 2 1 3 32 32 H 1.09004 * 109.46969 * 120.00026 * 2 1 3 33 33 H 1.09002 * 109.47128 * 300.00371 * 5 3 2 34 34 H 1.08997 * 109.46744 * 59.99967 * 5 3 2 35 35 H 1.08997 * 109.47358 * 60.00343 * 6 5 3 36 36 H 1.09001 * 109.47052 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.47044 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47258 * 300.00486 * 7 6 5 39 39 H 1.09004 * 109.46518 * 180.02562 * 8 7 6 40 40 H 1.08994 * 109.47417 * 60.00373 * 8 7 6 41 41 H 1.08998 * 109.47407 * 174.99730 * 11 9 8 42 42 H 1.08997 * 109.47459 * 54.99519 * 11 9 8 43 43 H 0.96998 * 120.00056 * 359.97438 * 12 11 9 44 44 H 0.96998 * 119.99981 * 359.97438 * 15 13 12 45 45 H 1.09001 * 109.47040 * 56.92682 * 16 15 13 46 46 H 1.09000 * 109.47013 * 296.93416 * 16 15 13 47 47 H 0.96996 * 120.00188 * 185.01906 * 21 20 18 48 48 H 1.08996 * 117.49980 * 214.97251 * 26 17 16 49 49 H 1.09001 * 117.49671 * 359.97438 * 26 17 16 50 50 H 1.08998 * 117.50236 * 359.97143 * 27 17 16 51 51 H 1.09004 * 117.49872 * 144.99681 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.1457 3.5688 1.3077 7 6 3.6706 3.5701 1.1823 8 6 4.0753 2.8860 -0.1250 9 6 3.5648 1.4437 -0.1254 10 1 3.8535 0.9563 -1.0566 11 6 4.1743 0.6867 1.0563 12 7 5.6245 0.5846 0.8751 13 6 6.3763 -0.0457 1.7992 14 8 5.8509 -0.5300 2.7831 15 7 7.7105 -0.1392 1.6328 16 6 8.5277 -0.8249 2.6370 17 6 9.9854 -0.8564 2.1733 18 6 10.2550 -1.6666 0.9315 19 1 10.3509 -1.1737 -0.0246 20 6 10.3736 -3.0377 1.0152 21 7 10.1450 -3.6491 2.1570 22 14 10.8589 -4.0269 -0.4932 23 1 12.1922 -3.5800 -0.9703 24 1 10.9159 -5.4688 -0.1423 25 1 9.8537 -3.8186 -1.5662 26 6 10.8234 0.4052 2.3895 27 6 11.0703 -0.8343 3.2518 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5488 2.1252 1.3970 34 1 2.0698 1.5875 2.1492 35 1 1.7115 4.1081 0.4659 36 1 1.8577 4.0560 2.2393 37 1 4.0342 4.5976 1.1821 38 1 4.1048 3.0307 2.0241 39 1 5.1617 2.8866 -0.2141 40 1 3.6411 3.4253 -0.9669 41 1 3.7433 -0.3131 1.1086 42 1 3.9606 1.2232 1.9807 43 1 6.0436 0.9706 0.0901 44 1 8.1295 0.2467 0.8478 45 1 8.1652 -1.8447 2.7658 46 1 8.4596 -0.2926 3.5858 47 1 10.2987 -4.6036 2.2353 48 1 11.5697 0.6494 1.6335 49 1 10.3362 1.2582 2.8619 50 1 10.7457 -0.7968 4.2916 51 1 11.9792 -1.4057 3.0631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454879590.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:52 Heat of formation + Delta-G solvation = -44.757615 kcal Electronic energy + Delta-G solvation = -26375.173218 eV Core-core repulsion = 22887.634507 eV Total energy + Delta-G solvation = -3487.538710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16789 -38.86874 -36.71392 -34.40452 -33.95194 -33.13522 -31.97066 -30.88995 -29.29928 -26.72927 -25.55219 -24.47839 -24.07386 -22.26909 -21.21723 -20.89241 -20.13962 -19.33045 -18.86832 -17.52550 -16.24781 -16.01182 -15.66146 -15.12456 -14.80424 -14.63249 -14.34080 -14.30953 -13.90867 -13.85635 -13.48492 -13.19488 -12.94412 -12.91014 -12.73907 -12.55996 -12.00801 -11.81457 -11.62952 -11.59835 -11.50075 -11.28868 -11.16770 -11.03914 -10.86580 -10.75970 -10.53025 -10.29715 -10.26366 -10.12035 -10.06843 -9.68447 -9.46710 -8.92812 -8.68537 -8.47539 -8.24019 -7.87659 -6.05995 -4.14192 3.28430 3.33691 3.34768 3.35745 3.91010 4.37713 4.41996 4.46623 4.52036 4.87405 4.94440 4.96062 5.05448 5.09857 5.16093 5.23878 5.25591 5.29761 5.38149 5.40177 5.49349 5.54378 5.60867 5.71015 5.80430 5.83072 5.85460 5.94586 5.97023 6.03722 6.05678 6.12417 6.14760 6.17266 6.28021 6.35647 6.39248 6.50789 6.62859 6.70343 6.90395 6.91619 7.09057 7.38291 7.45253 7.53449 7.67329 7.84020 8.36221 8.75347 8.86750 9.31063 9.52786 11.02619 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.003111 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.510263 B = 8998.022791 C = 9769.965832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.075 4.075 4 H 0.072 0.928 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.113 4.113 9 C -0.096 4.096 10 H 0.076 0.924 11 C 0.141 3.859 12 N -0.753 5.753 13 C 0.697 3.303 14 O -0.605 6.605 15 N -0.721 5.721 16 C 0.182 3.818 17 C 0.031 3.969 18 C -0.499 4.499 19 H 0.058 0.942 20 C 0.074 3.926 21 N -0.873 5.873 22 Si 0.889 3.111 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.210 4.210 27 C -0.153 4.153 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.391 0.609 44 H 0.394 0.606 45 H 0.075 0.925 46 H 0.030 0.970 47 H 0.262 0.738 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.849 13.021 -5.381 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.094 4.094 4 H 0.090 0.910 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.162 4.162 8 C -0.150 4.150 9 C -0.114 4.114 10 H 0.094 0.906 11 C 0.017 3.983 12 N -0.410 5.410 13 C 0.397 3.603 14 O -0.484 6.484 15 N -0.373 5.373 16 C 0.058 3.942 17 C 0.030 3.970 18 C -0.536 4.536 19 H 0.077 0.923 20 C -0.130 4.130 21 N -0.509 5.509 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.247 4.247 27 C -0.192 4.192 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.224 0.776 44 H 0.227 0.773 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.386 12.340 -4.356 20.970 hybrid contribution 0.790 -0.333 -1.512 1.738 sum -15.596 12.007 -5.868 20.538 Atomic orbital electron populations 1.21810 0.96026 1.01489 1.01628 1.21684 0.95760 0.96373 1.02621 1.21102 0.93916 0.96053 0.98296 0.90985 1.21712 1.00569 0.95740 0.97814 1.21515 0.95843 0.96733 1.01403 1.21589 0.95839 1.00342 0.98383 1.21541 1.00706 0.94961 0.97831 1.21410 0.95268 0.96063 0.98695 0.90596 1.21313 0.79121 1.00026 0.97839 1.45124 1.07487 1.62777 1.25629 1.16045 0.81908 0.79331 0.83004 1.90866 1.72531 1.53928 1.31115 1.45119 1.04554 1.60514 1.27121 1.20831 0.90093 0.96199 0.87059 1.19038 0.87342 0.94123 0.96458 1.20315 1.50583 0.90749 0.92002 0.92339 1.24960 0.94526 0.97605 0.95923 1.69983 1.45990 1.10079 1.24844 0.86719 0.79060 0.79157 0.83379 1.20298 1.21285 1.20270 1.22977 1.05702 0.91898 1.04137 1.22525 1.02316 0.99709 0.94619 0.92921 0.92532 0.93033 0.91893 0.91274 0.91841 0.91373 0.92300 0.92244 0.92274 0.91297 0.91794 0.91992 0.91885 0.91467 0.77551 0.77316 0.90717 0.95127 0.92824 0.90422 0.91606 0.91626 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.13 -1.11 4.90 -26.74 -0.13 -1.25 16 3 C -0.07 -0.62 1.97 -90.62 -0.18 -0.80 16 4 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.12 -1.01 4.69 -26.73 -0.13 -1.14 16 6 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 7 C -0.12 -1.12 5.65 -26.73 -0.15 -1.27 16 8 C -0.11 -0.98 5.32 -26.73 -0.14 -1.12 16 9 C -0.10 -0.89 2.23 -90.62 -0.20 -1.09 16 10 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 11 C 0.14 1.81 4.14 -4.04 -0.02 1.79 16 12 N -0.75 -11.02 5.29 -65.22 -0.34 -11.36 16 13 C 0.70 13.83 8.57 -86.92 -0.74 13.08 16 14 O -0.60 -14.47 16.34 5.28 0.09 -14.38 16 15 N -0.72 -14.50 5.47 -65.22 -0.36 -14.86 16 16 C 0.18 4.26 5.50 -4.04 -0.02 4.24 16 17 C 0.03 0.74 1.29 -155.66 -0.20 0.54 16 18 C -0.50 -12.93 8.67 -34.44 -0.30 -13.22 16 19 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 20 C 0.07 1.98 5.42 -17.82 -0.10 1.88 16 21 N -0.87 -24.53 13.10 55.43 0.73 -23.80 16 22 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 C -0.21 -4.35 9.96 -26.73 -0.27 -4.62 16 27 C -0.15 -3.51 9.68 -26.73 -0.26 -3.76 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.70 6.59 -51.93 -0.34 0.36 16 33 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 34 H 0.07 0.67 6.54 -51.93 -0.34 0.33 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.75 6.32 -51.93 -0.33 0.42 16 39 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.90 6.28 -51.93 -0.33 0.57 16 42 H 0.07 0.92 4.83 -51.93 -0.25 0.67 16 43 H 0.39 4.72 7.67 -40.82 -0.31 4.40 16 44 H 0.39 7.13 8.44 -40.82 -0.34 6.79 16 45 H 0.07 2.04 8.13 -51.93 -0.42 1.62 16 46 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 47 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 48 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 51 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -30.06 389.82 -10.85 -40.92 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -9.18 Total: 10.55 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.63 Total: -8.64 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.02 Total: -50.02 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.06 -10.85 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454879590.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.841 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds