Wall clock time and date at job start Fri Apr 10 2020 22:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 C 1.50695 * 109.47132 * 239.99494 * 2 1 3 5 5 H 1.07994 * 120.00338 * 239.99841 * 4 2 1 6 6 C 1.37882 * 119.99931 * 60.00205 * 4 2 1 7 7 N 1.31513 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00165 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47113 * 59.99911 * 8 6 4 10 10 H 1.48498 * 109.47251 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47063 * 300.00186 * 8 6 4 12 12 C 1.53000 * 109.46894 * 119.99561 * 2 1 3 13 13 N 1.46503 * 109.47360 * 300.00027 * 12 2 1 14 14 C 1.34769 * 119.99857 * 180.02562 * 13 12 2 15 15 O 1.21589 * 120.00541 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99767 * 180.02562 * 14 13 12 17 17 C 1.46507 * 120.00133 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.73986 * 35.60496 * 17 16 14 19 19 C 1.53296 * 109.70831 * 274.99828 * 17 16 14 20 20 C 1.52630 * 108.52926 * 176.63246 * 19 17 16 21 21 C 1.53050 * 110.87395 * 62.21595 * 20 19 17 22 22 H 1.09008 * 112.45042 * 71.87837 * 21 20 19 23 23 C 1.55217 * 106.63273 * 194.78197 * 21 20 19 24 24 C 1.54010 * 106.30263 * 90.80598 * 23 21 20 25 25 C 1.54621 * 106.58237 * 1.72766 * 24 23 21 26 26 C 1.53888 * 110.75416 * 306.10144 * 21 20 19 27 27 H 1.09007 * 108.60531 * 170.76571 * 26 21 20 28 28 C 1.50967 * 113.52464 * 49.05308 * 26 21 20 29 29 H 1.09005 * 109.47541 * 300.00301 * 1 2 3 30 30 H 1.08999 * 109.47285 * 60.00397 * 1 2 3 31 31 H 1.09001 * 109.47542 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47080 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47203 * 299.99661 * 3 2 1 34 34 H 1.08995 * 109.47642 * 59.99826 * 3 2 1 35 35 H 0.97007 * 119.99965 * 180.02562 * 7 6 4 36 36 H 1.08996 * 109.47088 * 179.97438 * 12 2 1 37 37 H 1.09001 * 109.47372 * 59.99828 * 12 2 1 38 38 H 0.96997 * 119.99770 * 0.02562 * 13 12 2 39 39 H 0.97000 * 120.00653 * 0.02562 * 16 14 13 40 40 H 1.09000 * 109.62559 * 296.34830 * 19 17 16 41 41 H 1.09006 * 109.62675 * 56.92076 * 19 17 16 42 42 H 1.08995 * 109.19706 * 182.58134 * 20 19 17 43 43 H 1.09001 * 109.19612 * 301.86283 * 20 19 17 44 44 H 1.08996 * 110.08861 * 331.59601 * 23 21 20 45 45 H 1.09006 * 110.13667 * 210.03854 * 23 21 20 46 46 H 1.09002 * 110.03616 * 242.45235 * 24 23 21 47 47 H 1.08999 * 110.07584 * 121.03272 * 24 23 21 48 48 H 1.08996 * 110.62800 * 264.56750 * 25 24 23 49 49 H 1.09002 * 110.62228 * 141.54930 * 25 24 23 50 50 H 1.09002 * 109.07304 * 187.11195 * 28 26 21 51 51 H 1.09001 * 109.01323 * 68.12495 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8074 -1.1192 -4.0076 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4906 3.6695 15 8 2.5766 -1.4792 3.7812 16 7 1.4279 0.1445 4.7699 17 6 1.7827 -0.3553 6.1006 18 1 2.7972 -0.7537 6.0858 19 6 0.8010 -1.4562 6.5181 20 6 1.2439 -2.0148 7.8676 21 6 1.2030 -0.9303 8.9468 22 1 0.1848 -0.6619 9.2287 23 6 2.0116 -1.4747 10.1546 24 6 3.4651 -1.0099 9.9465 25 6 3.4777 -0.1673 8.6501 26 6 2.0172 0.3014 8.5132 27 1 1.8321 1.1080 9.2227 28 6 1.6896 0.7802 7.1194 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.7089 1.1613 -3.4845 36 1 3.1299 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2494 38 1 0.9936 0.7579 2.3564 39 1 0.8693 0.9325 4.6810 40 1 -0.2019 -1.0383 6.6060 41 1 0.8050 -2.2520 5.7732 42 1 0.5796 -2.8303 8.1534 43 1 2.2614 -2.3961 7.7812 44 1 1.9661 -2.5635 10.1755 45 1 1.6174 -1.0658 11.0851 46 1 4.1212 -1.8735 9.8370 47 1 3.7877 -0.4009 10.7910 48 1 3.7657 -0.7806 7.7964 49 1 4.1468 0.6868 8.7539 50 1 2.3891 1.5680 6.8398 51 1 0.6771 1.1839 7.1114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458465062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:31 Heat of formation + Delta-G solvation = -67.608041 kcal Electronic energy + Delta-G solvation = -26417.049573 eV Core-core repulsion = 22928.519994 eV Total energy + Delta-G solvation = -3488.529579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51091 -39.22035 -36.56730 -35.29965 -33.26624 -32.47147 -31.60798 -30.60819 -28.43802 -26.89323 -25.69112 -25.47165 -24.61309 -22.80466 -21.98994 -20.63531 -20.22507 -18.90759 -18.73261 -17.77720 -16.69106 -15.81136 -15.60608 -15.02828 -14.89255 -14.69756 -14.55089 -14.14814 -14.04912 -13.56010 -13.39616 -13.00244 -12.84007 -12.75068 -12.36644 -12.14192 -11.86827 -11.79112 -11.50267 -11.40556 -11.31047 -11.16254 -11.04603 -10.82344 -10.81587 -10.70512 -10.45950 -10.38371 -10.31658 -10.18114 -10.09530 -9.67626 -9.59351 -9.26645 -8.85583 -8.76600 -8.38146 -8.13106 -5.99470 -4.09274 3.15353 3.32077 3.36079 3.40431 3.71411 4.27236 4.31818 4.38636 4.42034 4.77934 4.81798 4.90378 5.04381 5.10068 5.18695 5.23614 5.27188 5.32598 5.34965 5.46632 5.48983 5.60946 5.62506 5.69056 5.78399 5.84840 5.93717 5.97161 6.06836 6.13585 6.17626 6.22079 6.29748 6.38191 6.41021 6.54759 6.79870 6.84573 6.86281 6.95633 7.06807 7.15623 7.36676 7.48308 7.59207 7.72510 8.04415 8.15792 8.41758 8.56422 8.90583 9.12917 9.56239 11.01929 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.036934 B = 0.002452 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.926295 B =11415.398685 C =11525.427021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.734 5.734 14 C 0.698 3.302 15 O -0.600 6.600 16 N -0.751 5.751 17 C 0.167 3.833 18 H 0.088 0.912 19 C -0.130 4.130 20 C -0.108 4.108 21 C -0.087 4.087 22 H 0.078 0.922 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.080 4.080 27 H 0.071 0.929 28 C -0.117 4.117 29 H 0.005 0.995 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.006 0.994 35 H 0.260 0.740 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.393 0.607 39 H 0.391 0.609 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 1.420 23.616 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.389 5.389 14 C 0.398 3.602 15 O -0.479 6.479 16 N -0.406 5.406 17 C 0.062 3.938 18 H 0.106 0.894 19 C -0.169 4.169 20 C -0.147 4.147 21 C -0.106 4.106 22 H 0.096 0.904 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.099 4.099 27 H 0.089 0.911 28 C -0.155 4.155 29 H 0.024 0.976 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.227 0.773 39 H 0.224 0.776 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.417 0.607 23.528 23.539 hybrid contribution -0.241 0.296 -0.916 0.992 sum -0.658 0.902 22.612 22.640 Atomic orbital electron populations 1.21819 0.97824 0.99132 0.99968 1.18349 0.92755 0.92748 0.90569 1.21819 0.98566 0.98396 0.99973 1.20957 1.31436 1.12081 0.89904 0.92481 1.24879 0.94892 0.94936 0.98826 1.69799 1.36726 1.22753 1.23269 0.86631 0.79241 0.79791 0.82176 1.20285 1.21364 1.20290 1.21555 0.97807 0.95371 0.82471 1.45510 1.55626 1.33058 1.04663 1.16085 0.80435 0.83021 0.80687 1.90872 1.43245 1.27694 1.86092 1.45207 1.57263 1.33253 1.04855 1.20700 0.99492 0.93480 0.80155 0.89432 1.21953 0.98953 0.99051 0.96982 1.21506 1.01920 0.97360 0.93867 1.22025 0.98567 0.94914 0.95054 0.90368 1.22466 0.95102 1.00653 0.97897 1.22185 0.96744 0.99581 0.97726 1.22385 0.96185 0.99550 0.98001 1.21238 0.95401 0.97455 0.95772 0.91073 1.21265 1.02215 0.97967 0.94073 0.97556 0.89681 0.95482 0.95477 0.89680 0.97548 0.92996 0.93058 0.93066 0.77281 0.77561 0.92064 0.91195 0.92121 0.91575 0.91726 0.92190 0.91965 0.92111 0.90950 0.91710 0.91340 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.38 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.77 9.35 55.43 0.52 -23.25 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 13 N -0.73 -13.44 4.96 -65.23 -0.32 -13.76 16 14 C 0.70 12.61 8.54 -86.92 -0.74 11.87 16 15 O -0.60 -13.17 16.02 5.29 0.08 -13.09 16 16 N -0.75 -9.97 5.11 -58.61 -0.30 -10.27 16 17 C 0.17 1.96 2.27 -67.86 -0.15 1.81 16 18 H 0.09 1.23 6.22 -51.93 -0.32 0.91 16 19 C -0.13 -1.47 5.52 -26.77 -0.15 -1.62 16 20 C -0.11 -1.02 4.62 -26.89 -0.12 -1.14 16 21 C -0.09 -0.68 3.47 -88.96 -0.31 -0.99 16 22 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 23 C -0.12 -0.88 6.15 -25.03 -0.15 -1.04 16 24 C -0.12 -0.92 6.71 -25.35 -0.17 -1.09 16 25 C -0.12 -1.02 5.74 -25.36 -0.15 -1.17 16 26 C -0.08 -0.63 2.70 -90.66 -0.25 -0.87 16 27 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 28 C -0.12 -1.02 4.86 -27.84 -0.14 -1.16 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.39 6.44 6.18 -40.82 -0.25 6.19 16 39 H 0.39 4.18 8.61 -40.82 -0.35 3.83 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.67 7.05 -51.93 -0.37 0.31 16 44 H 0.06 0.46 7.76 -51.93 -0.40 0.06 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.70 6.04 -51.93 -0.31 0.39 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -28.95 377.12 -10.78 -39.73 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -9.24 Total: 7.27 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.19 Total: -8.18 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.10 Total: -47.29 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.95 -10.78 -39.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458465062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.875 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds