Wall clock time and date at job start Fri Apr 10 2020 22:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 C 1.50695 * 109.47132 * 239.99494 * 2 1 3 5 5 H 1.07994 * 120.00338 * 239.99841 * 4 2 1 6 6 C 1.37882 * 119.99931 * 60.00205 * 4 2 1 7 7 N 1.31513 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00165 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47113 * 59.99911 * 8 6 4 10 10 H 1.48498 * 109.47251 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47063 * 300.00186 * 8 6 4 12 12 C 1.53000 * 109.46894 * 119.99561 * 2 1 3 13 13 N 1.46503 * 109.47360 * 300.00027 * 12 2 1 14 14 C 1.34769 * 119.99857 * 180.02562 * 13 12 2 15 15 O 1.21589 * 120.00541 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99767 * 180.02562 * 14 13 12 17 17 C 1.46507 * 120.00133 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.73986 * 35.60496 * 17 16 14 19 19 C 1.53296 * 109.70831 * 274.99828 * 17 16 14 20 20 C 1.52630 * 108.52926 * 176.63246 * 19 17 16 21 21 C 1.53050 * 110.87395 * 62.21595 * 20 19 17 22 22 H 1.09008 * 112.45042 * 71.87837 * 21 20 19 23 23 C 1.55217 * 106.63273 * 194.78197 * 21 20 19 24 24 C 1.54010 * 106.30263 * 90.80598 * 23 21 20 25 25 C 1.54621 * 106.58237 * 1.72766 * 24 23 21 26 26 C 1.53888 * 110.75416 * 306.10144 * 21 20 19 27 27 H 1.09007 * 108.60531 * 170.76571 * 26 21 20 28 28 C 1.50967 * 113.52464 * 49.05308 * 26 21 20 29 29 H 1.09005 * 109.47541 * 300.00301 * 1 2 3 30 30 H 1.08999 * 109.47285 * 60.00397 * 1 2 3 31 31 H 1.09001 * 109.47542 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47080 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47203 * 299.99661 * 3 2 1 34 34 H 1.08995 * 109.47642 * 59.99826 * 3 2 1 35 35 H 0.97007 * 119.99965 * 180.02562 * 7 6 4 36 36 H 1.08996 * 109.47088 * 179.97438 * 12 2 1 37 37 H 1.09001 * 109.47372 * 59.99828 * 12 2 1 38 38 H 0.96997 * 119.99770 * 0.02562 * 13 12 2 39 39 H 0.97000 * 120.00653 * 0.02562 * 16 14 13 40 40 H 1.09000 * 109.62559 * 296.34830 * 19 17 16 41 41 H 1.09006 * 109.62675 * 56.92076 * 19 17 16 42 42 H 1.08995 * 109.19706 * 182.58134 * 20 19 17 43 43 H 1.09001 * 109.19612 * 301.86283 * 20 19 17 44 44 H 1.08996 * 110.08861 * 331.59601 * 23 21 20 45 45 H 1.09006 * 110.13667 * 210.03854 * 23 21 20 46 46 H 1.09002 * 110.03616 * 242.45235 * 24 23 21 47 47 H 1.08999 * 110.07584 * 121.03272 * 24 23 21 48 48 H 1.08996 * 110.62800 * 264.56750 * 25 24 23 49 49 H 1.09002 * 110.62228 * 141.54930 * 25 24 23 50 50 H 1.09002 * 109.07304 * 187.11195 * 28 26 21 51 51 H 1.09001 * 109.01323 * 68.12495 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8074 -1.1192 -4.0076 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4906 3.6695 15 8 2.5766 -1.4792 3.7812 16 7 1.4279 0.1445 4.7699 17 6 1.7827 -0.3553 6.1006 18 1 2.7972 -0.7537 6.0858 19 6 0.8010 -1.4562 6.5181 20 6 1.2439 -2.0148 7.8676 21 6 1.2030 -0.9303 8.9468 22 1 0.1848 -0.6619 9.2287 23 6 2.0116 -1.4747 10.1546 24 6 3.4651 -1.0099 9.9465 25 6 3.4777 -0.1673 8.6501 26 6 2.0172 0.3014 8.5132 27 1 1.8321 1.1080 9.2227 28 6 1.6896 0.7802 7.1194 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.7089 1.1613 -3.4845 36 1 3.1299 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2494 38 1 0.9936 0.7579 2.3564 39 1 0.8693 0.9325 4.6810 40 1 -0.2019 -1.0383 6.6060 41 1 0.8050 -2.2520 5.7732 42 1 0.5796 -2.8303 8.1534 43 1 2.2614 -2.3961 7.7812 44 1 1.9661 -2.5635 10.1755 45 1 1.6174 -1.0658 11.0851 46 1 4.1212 -1.8735 9.8370 47 1 3.7877 -0.4009 10.7910 48 1 3.7657 -0.7806 7.7964 49 1 4.1468 0.6868 8.7539 50 1 2.3891 1.5680 6.8398 51 1 0.6771 1.1839 7.1114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458465062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:30 Heat of formation + Delta-G solvation = -83.344310 kcal Electronic energy + Delta-G solvation = -26417.731949 eV Core-core repulsion = 22928.519994 eV Total energy + Delta-G solvation = -3489.211955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47998 -40.44808 -38.25337 -36.43405 -34.98951 -33.60336 -32.65006 -32.09237 -29.21090 -27.80889 -27.55206 -27.33537 -26.28520 -23.58673 -22.97585 -21.88049 -20.96484 -20.56922 -19.95557 -18.90902 -17.75284 -17.70201 -16.64420 -16.62068 -16.31188 -15.74415 -15.56765 -15.35252 -15.03341 -14.95265 -14.68842 -14.50873 -14.09668 -13.99528 -13.68210 -13.24386 -13.13852 -13.08241 -12.70340 -12.62992 -12.61045 -12.54271 -12.29728 -12.22344 -12.12940 -12.02270 -11.73335 -11.47413 -11.46891 -11.33130 -11.16746 -11.08000 -11.01609 -10.85483 -10.70153 -10.39236 -10.19223 -9.61380 -8.01597 -6.17162 1.44605 1.45402 1.52190 1.84656 2.24729 2.46894 3.21855 3.41458 3.63088 3.65551 3.77178 4.07315 4.10679 4.29455 4.37625 4.40874 4.44264 4.54224 4.56483 4.65274 4.69401 4.71857 4.77731 4.80208 4.84899 4.95917 4.98899 5.04734 5.07129 5.10097 5.12327 5.16486 5.21102 5.22740 5.25330 5.34748 5.39702 5.40765 5.48540 5.56001 5.62190 5.65805 5.67741 5.68307 5.70183 6.14147 6.16308 6.23087 6.44740 6.86793 7.22162 7.50334 7.69350 8.97224 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.036934 B = 0.002452 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.926295 B =11415.398685 C =11525.427021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.169 3.831 13 N -0.727 5.727 14 C 0.696 3.304 15 O -0.643 6.643 16 N -0.730 5.730 17 C 0.164 3.836 18 H 0.059 0.941 19 C -0.126 4.126 20 C -0.105 4.105 21 C -0.083 4.083 22 H 0.093 0.907 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.078 4.078 27 H 0.091 0.909 28 C -0.108 4.108 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.033 0.967 37 H 0.032 0.968 38 H 0.405 0.595 39 H 0.409 0.591 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 2.836 25.620 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.044 3.956 13 N -0.382 5.382 14 C 0.396 3.604 15 O -0.525 6.525 16 N -0.386 5.386 17 C 0.059 3.941 18 H 0.078 0.922 19 C -0.165 4.165 20 C -0.143 4.143 21 C -0.101 4.101 22 H 0.112 0.888 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.164 4.164 26 C -0.096 4.096 27 H 0.109 0.891 28 C -0.146 4.146 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.242 0.758 39 H 0.245 0.755 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.511 2.067 25.568 25.695 hybrid contribution 0.109 -0.169 -1.502 1.516 sum -1.402 1.898 24.065 24.181 Atomic orbital electron populations 1.21662 0.97097 0.98594 1.00385 1.18340 0.93257 0.93034 0.90131 1.21661 0.97861 0.97830 1.00393 1.21247 1.31789 1.12201 0.91628 0.93842 1.25447 0.95146 0.95610 1.00924 1.69899 1.36949 1.23228 1.23669 0.85822 0.78620 0.78815 0.79581 1.20296 1.20707 1.20299 1.21086 0.96531 0.94572 0.83379 1.45200 1.55858 1.33252 1.03921 1.16234 0.80126 0.82703 0.81375 1.90849 1.45177 1.29745 1.86710 1.45066 1.56318 1.33057 1.04129 1.20833 0.98153 0.95079 0.79995 0.92232 1.21886 0.99679 0.97832 0.97055 1.21477 1.01035 0.98288 0.93481 1.22025 0.99518 0.94125 0.94465 0.88845 1.22455 0.94676 1.00605 0.98174 1.22194 0.97041 0.99397 0.97593 1.22382 0.96877 0.99552 0.97629 1.21262 0.94825 0.98048 0.95512 0.89088 1.21221 1.03540 0.96497 0.93360 0.94423 0.91836 0.96454 0.96429 0.91842 0.94404 0.92995 0.94897 0.94941 0.75836 0.75501 0.90483 0.94780 0.91485 0.93144 0.91997 0.90724 0.92653 0.90945 0.93256 0.91208 0.91050 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 2 C 0.05 2.50 0.50 -52.93 -0.03 2.47 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -28.50 8.01 25.60 0.21 -28.29 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.52 5.15 84.66 0.44 1.95 16 7 N -0.90 -48.18 9.35 21.45 0.20 -47.98 16 8 Si 0.94 43.02 29.54 68.60 2.03 45.05 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.17 7.48 4.50 86.38 0.39 7.87 16 13 N -0.73 -26.05 4.96 -478.54 -2.37 -28.42 16 14 C 0.70 25.02 8.54 179.06 1.53 26.55 16 15 O -0.64 -29.04 16.02 -3.99 -0.06 -29.11 16 16 N -0.73 -18.46 5.11 -457.59 -2.34 -20.79 16 17 C 0.16 3.73 2.27 45.03 0.10 3.83 16 18 H 0.06 1.73 6.22 -2.39 -0.01 1.71 16 19 C -0.13 -2.76 5.52 30.57 0.17 -2.59 16 20 C -0.10 -1.88 4.62 30.49 0.14 -1.74 16 21 C -0.08 -1.09 3.47 -9.72 -0.03 -1.12 16 22 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 23 C -0.12 -1.46 6.15 31.70 0.19 -1.26 16 24 C -0.12 -1.64 6.71 31.49 0.21 -1.43 16 25 C -0.13 -1.94 5.74 31.48 0.18 -1.76 16 26 C -0.08 -1.02 2.70 -10.82 -0.03 -1.05 16 27 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 28 C -0.11 -1.61 4.86 29.88 0.15 -1.46 16 29 H 0.04 1.40 6.86 -2.38 -0.02 1.39 16 30 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 34 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 35 H 0.26 13.46 8.31 -92.70 -0.77 12.69 16 36 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.40 12.38 6.18 -92.71 -0.57 11.81 16 39 H 0.41 7.61 8.61 -92.71 -0.80 6.81 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.06 7.05 -2.39 -0.02 1.04 16 44 H 0.06 0.78 7.76 -2.39 -0.02 0.76 16 45 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.05 0.98 6.04 -2.39 -0.01 0.97 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -63.74 377.12 1.77 -61.98 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.46 Total: 26.90 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 4.78 Total: -7.62 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -4.51 Total: -97.20 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.06 Total: -29.11 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -63.74 1.77 -61.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458465062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.365 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds