Wall clock time and date at job start Fri Apr 10 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99815 * 2 1 4 4 C 1.53006 * 109.46706 * 121.24962 * 3 2 1 5 5 N 1.46495 * 109.47279 * 305.33497 * 4 3 2 6 6 C 1.34777 * 120.00089 * 303.01874 * 5 4 3 7 7 O 1.21587 * 120.00119 * 354.52682 * 6 5 4 8 8 N 1.34779 * 120.00177 * 174.52797 * 6 5 4 9 9 C 1.46499 * 119.99866 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47197 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47155 * 300.00145 * 10 9 8 12 12 C 1.53009 * 109.46858 * 59.99863 * 10 9 8 13 13 C 1.50694 * 109.47628 * 179.97438 * 10 9 8 14 14 H 1.08009 * 119.99776 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00624 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99761 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00283 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.46961 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46673 * 120.00079 * 17 15 13 20 20 H 1.48502 * 109.47095 * 239.99887 * 17 15 13 21 21 C 1.53005 * 109.46843 * 65.33325 * 4 3 2 22 22 C 1.52998 * 109.46894 * 179.97438 * 21 4 3 23 23 C 1.53000 * 109.47323 * 300.00295 * 22 21 4 24 24 C 1.53005 * 109.47377 * 60.00000 * 23 22 21 25 25 C 1.53001 * 109.46826 * 185.33338 * 4 3 2 26 26 H 1.08003 * 120.00423 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99995 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99732 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46823 * 1.25297 * 3 2 1 30 30 H 1.08996 * 109.47422 * 241.24535 * 3 2 1 31 31 H 0.97005 * 120.00362 * 123.01574 * 5 4 3 32 32 H 0.96991 * 119.99791 * 359.97438 * 8 6 5 33 33 H 1.08996 * 109.47039 * 299.99764 * 9 8 6 34 34 H 1.08999 * 109.47373 * 59.99817 * 9 8 6 35 35 H 1.09006 * 109.47340 * 59.99445 * 11 10 9 36 36 H 1.08999 * 109.47020 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.46866 * 299.99658 * 11 10 9 38 38 H 1.08996 * 109.47223 * 60.00143 * 12 10 9 39 39 H 1.08995 * 109.46700 * 180.02562 * 12 10 9 40 40 H 1.08996 * 109.46899 * 300.00077 * 12 10 9 41 41 H 0.97000 * 120.00473 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.47306 * 299.99652 * 21 4 3 43 43 H 1.09004 * 109.46896 * 60.00310 * 21 4 3 44 44 H 1.08996 * 109.47429 * 180.02562 * 22 21 4 45 45 H 1.09000 * 109.47238 * 60.00137 * 22 21 4 46 46 H 1.09004 * 109.47327 * 299.99995 * 23 22 21 47 47 H 1.09004 * 109.47502 * 179.97438 * 23 22 21 48 48 H 1.08998 * 109.47306 * 180.02562 * 24 23 22 49 49 H 1.08996 * 109.47125 * 59.99491 * 24 23 22 50 50 H 1.09000 * 109.47134 * 300.00219 * 25 4 3 51 51 H 1.08995 * 109.46906 * 60.00525 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9665 1.3726 1.2333 5 7 2.1636 1.1544 2.4390 6 6 1.1105 1.9537 2.7012 7 8 0.8860 2.9156 1.9922 8 7 0.3063 1.6868 3.7493 9 6 -0.8380 2.5559 4.0345 10 6 -1.5801 2.0342 5.2666 11 6 -2.0746 0.6112 4.9995 12 6 -0.6325 2.0278 6.4679 13 6 -2.7568 2.9286 5.5604 14 1 -2.9558 3.7835 4.9310 15 6 -3.5795 2.6557 6.6326 16 7 -3.3369 1.6150 7.3993 17 14 -5.0385 3.7639 6.9964 18 1 -5.0915 4.8576 5.9933 19 1 -6.2917 2.9699 6.9306 20 1 -4.8918 4.3456 8.3549 21 6 4.0445 0.2911 1.1358 22 6 4.9479 0.3589 2.3687 23 6 5.6116 1.7357 2.4396 24 6 4.5336 2.8172 2.5371 25 6 3.6302 2.7493 1.3047 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3553 2.1334 0.0225 30 1 2.6733 1.3727 -0.9009 31 1 2.3898 0.4347 3.0488 32 1 0.4852 0.9193 4.3147 33 1 -0.4857 3.5698 4.2244 34 1 -1.5132 2.5602 3.1789 35 1 -1.2232 -0.0355 4.7872 36 1 -2.6029 0.2394 5.8774 37 1 -2.7496 0.6158 4.1437 38 1 -0.2802 3.0415 6.6582 39 1 -1.1611 1.6557 7.3455 40 1 0.2188 1.3811 6.2556 41 1 -3.9158 1.4227 8.1535 42 1 3.5716 -0.6897 1.0849 43 1 4.6419 0.4535 0.2387 44 1 5.7161 -0.4112 2.2991 45 1 4.3507 0.1969 3.2661 46 1 6.2087 1.8978 1.5422 47 1 6.2549 1.7842 3.3182 48 1 5.0064 3.7980 2.5871 49 1 3.9364 2.6550 3.4343 50 1 4.2276 2.9116 0.4075 51 1 2.8623 3.5196 1.3741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459240656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:08 Heat of formation + Delta-G solvation = -36.427185 kcal Electronic energy + Delta-G solvation = -27499.493926 eV Core-core repulsion = 24012.316450 eV Total energy + Delta-G solvation = -3487.177476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55594 -38.24715 -36.23101 -34.89412 -33.30022 -32.77919 -31.00096 -30.82082 -29.78647 -26.04623 -25.68289 -25.51539 -24.70469 -22.89426 -21.70089 -20.80027 -19.51931 -19.06984 -18.54857 -18.01909 -15.96875 -15.77068 -15.67661 -15.01839 -14.69230 -14.58879 -14.35346 -14.04052 -13.70603 -13.52519 -13.37586 -12.96038 -12.83238 -12.49207 -12.33280 -12.22294 -12.09975 -12.02063 -11.39368 -11.33378 -11.21329 -11.16476 -11.02644 -10.84236 -10.64989 -10.62996 -10.35953 -10.30082 -10.17387 -10.13119 -9.58450 -9.37004 -9.21509 -9.19941 -8.74030 -8.71374 -8.38019 -8.07540 -5.99259 -4.08849 2.45135 3.22887 3.28893 3.37540 3.42922 3.79235 4.41188 4.52713 4.64073 4.67564 4.83847 4.99727 5.08119 5.23857 5.27627 5.31095 5.36696 5.41539 5.47800 5.57212 5.63923 5.71402 5.84218 5.93954 6.00265 6.03406 6.11267 6.19112 6.24639 6.32628 6.35232 6.42511 6.47533 6.56261 6.79224 6.85491 6.87367 6.87835 6.97419 7.02416 7.07924 7.20677 7.40340 7.53071 7.60075 7.73195 8.05095 8.16825 8.42731 8.63125 8.91595 9.21165 9.56836 11.02132 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.003507 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.111383 B = 7981.376683 C = 8447.390412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.150 4.150 3 C -0.107 4.107 4 C 0.210 3.790 5 N -0.740 5.740 6 C 0.704 3.296 7 O -0.597 6.597 8 N -0.736 5.736 9 C 0.154 3.846 10 C 0.056 3.944 11 C -0.128 4.128 12 C -0.128 4.128 13 C -0.503 4.503 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.131 4.131 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.389 0.611 32 H 0.391 0.609 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.005 0.995 36 H 0.083 0.917 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.084 0.916 40 H 0.005 0.995 41 H 0.258 0.742 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.061 0.939 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.254 -5.297 -10.800 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.168 4.168 3 C -0.145 4.145 4 C 0.123 3.877 5 N -0.397 5.397 6 C 0.404 3.596 7 O -0.477 6.477 8 N -0.390 5.390 9 C 0.030 3.970 10 C 0.055 3.945 11 C -0.185 4.185 12 C -0.186 4.186 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.169 4.169 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.225 0.775 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.102 0.898 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.925 -4.483 -11.292 20.030 hybrid contribution -0.660 -0.238 0.864 1.113 sum 15.265 -4.721 -10.428 19.080 Atomic orbital electron populations 1.23856 0.96122 1.01670 1.00423 1.22730 0.95841 0.97751 1.00492 1.21234 0.99498 0.97108 0.96685 1.19923 0.89045 0.94706 0.84032 1.45207 1.31559 1.36251 1.26636 1.16000 0.79498 0.82536 0.81587 1.90794 1.74867 1.30426 1.51583 1.45516 1.30405 1.32572 1.30465 1.21498 0.84586 0.92105 0.98768 1.18360 0.93148 0.93751 0.89255 1.21793 0.97972 0.97068 1.01700 1.21805 0.96350 0.97993 1.02472 1.21033 1.09956 1.11023 1.12149 0.92431 1.24875 0.97551 0.95217 0.95898 1.69818 1.38268 1.27043 1.17382 0.86536 0.82544 0.80796 0.78138 1.19753 1.21099 1.21106 1.21853 0.96478 0.98602 0.98974 1.21533 0.98665 0.97298 0.98216 1.21545 0.97767 0.94869 1.01396 1.21445 0.96728 0.98047 0.99041 1.21986 0.99315 0.97967 0.97671 0.88530 0.89082 0.88170 0.88858 0.91181 0.77675 0.77485 0.93220 0.93195 0.97589 0.89800 0.95551 0.95548 0.89749 0.97612 0.93145 0.91282 0.90627 0.92031 0.91931 0.92246 0.92354 0.92449 0.91794 0.92040 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.32 29.01 0.42 -2.02 16 2 C -0.15 -1.78 8.37 -36.03 -0.30 -2.08 16 3 C -0.11 -1.30 4.37 -27.88 -0.12 -1.42 16 4 C 0.21 2.35 0.35 -131.82 -0.05 2.30 16 5 N -0.74 -9.43 3.51 -52.41 -0.18 -9.61 16 6 C 0.70 11.96 7.93 -86.92 -0.69 11.27 16 7 O -0.60 -12.01 12.64 5.29 0.07 -11.95 16 8 N -0.74 -13.12 4.96 -65.23 -0.32 -13.44 16 9 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 10 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 12 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 13 C -0.50 -13.25 8.01 -34.44 -0.28 -13.53 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 15 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.71 9.35 55.43 0.52 -23.20 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.12 -1.03 4.61 -26.73 -0.12 -1.15 16 22 C -0.12 -0.97 5.75 -26.73 -0.15 -1.12 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 24 C -0.12 -1.26 5.77 -26.75 -0.15 -1.41 16 25 C -0.13 -1.56 4.56 -26.75 -0.12 -1.68 16 26 H 0.10 1.47 7.83 -52.48 -0.41 1.06 16 27 H 0.09 1.10 8.06 -52.48 -0.42 0.67 16 28 H 0.10 1.02 7.09 -52.49 -0.37 0.64 16 29 H 0.09 1.44 5.95 -51.93 -0.31 1.13 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.39 4.29 7.24 -40.82 -0.30 4.00 16 32 H 0.39 6.41 6.18 -40.82 -0.25 6.16 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 36 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 40 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 42 H 0.07 0.56 6.80 -51.93 -0.35 0.20 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.53 6.80 -51.93 -0.35 0.18 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.81 7.60 -51.93 -0.39 0.42 16 50 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.09 1.38 6.20 -51.93 -0.32 1.06 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -27.85 378.85 -9.57 -37.42 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -9.02 Total: 10.34 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.32 Total: -11.10 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.01 Total: -46.25 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.95 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.85 -9.57 -37.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459240656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.994 kcal (2) G-P(sol) polarization free energy of solvation -27.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds