Wall clock time and date at job start Fri Apr 10 2020 22:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99815 * 2 1 4 4 C 1.53006 * 109.46706 * 121.24962 * 3 2 1 5 5 N 1.46495 * 109.47279 * 305.33497 * 4 3 2 6 6 C 1.34777 * 120.00089 * 303.01874 * 5 4 3 7 7 O 1.21587 * 120.00119 * 354.52682 * 6 5 4 8 8 N 1.34779 * 120.00177 * 174.52797 * 6 5 4 9 9 C 1.46499 * 119.99866 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47197 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47155 * 300.00145 * 10 9 8 12 12 C 1.53009 * 109.46858 * 59.99863 * 10 9 8 13 13 C 1.50694 * 109.47628 * 179.97438 * 10 9 8 14 14 H 1.08009 * 119.99776 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00624 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99761 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00283 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.46961 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46673 * 120.00079 * 17 15 13 20 20 H 1.48502 * 109.47095 * 239.99887 * 17 15 13 21 21 C 1.53005 * 109.46843 * 65.33325 * 4 3 2 22 22 C 1.52998 * 109.46894 * 179.97438 * 21 4 3 23 23 C 1.53000 * 109.47323 * 300.00295 * 22 21 4 24 24 C 1.53005 * 109.47377 * 60.00000 * 23 22 21 25 25 C 1.53001 * 109.46826 * 185.33338 * 4 3 2 26 26 H 1.08003 * 120.00423 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99995 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99732 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46823 * 1.25297 * 3 2 1 30 30 H 1.08996 * 109.47422 * 241.24535 * 3 2 1 31 31 H 0.97005 * 120.00362 * 123.01574 * 5 4 3 32 32 H 0.96991 * 119.99791 * 359.97438 * 8 6 5 33 33 H 1.08996 * 109.47039 * 299.99764 * 9 8 6 34 34 H 1.08999 * 109.47373 * 59.99817 * 9 8 6 35 35 H 1.09006 * 109.47340 * 59.99445 * 11 10 9 36 36 H 1.08999 * 109.47020 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.46866 * 299.99658 * 11 10 9 38 38 H 1.08996 * 109.47223 * 60.00143 * 12 10 9 39 39 H 1.08995 * 109.46700 * 180.02562 * 12 10 9 40 40 H 1.08996 * 109.46899 * 300.00077 * 12 10 9 41 41 H 0.97000 * 120.00473 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.47306 * 299.99652 * 21 4 3 43 43 H 1.09004 * 109.46896 * 60.00310 * 21 4 3 44 44 H 1.08996 * 109.47429 * 180.02562 * 22 21 4 45 45 H 1.09000 * 109.47238 * 60.00137 * 22 21 4 46 46 H 1.09004 * 109.47327 * 299.99995 * 23 22 21 47 47 H 1.09004 * 109.47502 * 179.97438 * 23 22 21 48 48 H 1.08998 * 109.47306 * 180.02562 * 24 23 22 49 49 H 1.08996 * 109.47125 * 59.99491 * 24 23 22 50 50 H 1.09000 * 109.47134 * 300.00219 * 25 4 3 51 51 H 1.08995 * 109.46906 * 60.00525 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9665 1.3726 1.2333 5 7 2.1636 1.1544 2.4390 6 6 1.1105 1.9537 2.7012 7 8 0.8860 2.9156 1.9922 8 7 0.3063 1.6868 3.7493 9 6 -0.8380 2.5559 4.0345 10 6 -1.5801 2.0342 5.2666 11 6 -2.0746 0.6112 4.9995 12 6 -0.6325 2.0278 6.4679 13 6 -2.7568 2.9286 5.5604 14 1 -2.9558 3.7835 4.9310 15 6 -3.5795 2.6557 6.6326 16 7 -3.3369 1.6150 7.3993 17 14 -5.0385 3.7639 6.9964 18 1 -5.0915 4.8576 5.9933 19 1 -6.2917 2.9699 6.9306 20 1 -4.8918 4.3456 8.3549 21 6 4.0445 0.2911 1.1358 22 6 4.9479 0.3589 2.3687 23 6 5.6116 1.7357 2.4396 24 6 4.5336 2.8172 2.5371 25 6 3.6302 2.7493 1.3047 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3553 2.1334 0.0225 30 1 2.6733 1.3727 -0.9009 31 1 2.3898 0.4347 3.0488 32 1 0.4852 0.9193 4.3147 33 1 -0.4857 3.5698 4.2244 34 1 -1.5132 2.5602 3.1789 35 1 -1.2232 -0.0355 4.7872 36 1 -2.6029 0.2394 5.8774 37 1 -2.7496 0.6158 4.1437 38 1 -0.2802 3.0415 6.6582 39 1 -1.1611 1.6557 7.3455 40 1 0.2188 1.3811 6.2556 41 1 -3.9158 1.4227 8.1535 42 1 3.5716 -0.6897 1.0849 43 1 4.6419 0.4535 0.2387 44 1 5.7161 -0.4112 2.2991 45 1 4.3507 0.1969 3.2661 46 1 6.2087 1.8978 1.5422 47 1 6.2549 1.7842 3.3182 48 1 5.0064 3.7980 2.5871 49 1 3.9364 2.6550 3.4343 50 1 4.2276 2.9116 0.4075 51 1 2.8623 3.5196 1.3741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459240656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:07 Heat of formation + Delta-G solvation = -50.716134 kcal Electronic energy + Delta-G solvation = -27500.113541 eV Core-core repulsion = 24012.316450 eV Total energy + Delta-G solvation = -3487.797091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68602 -39.53332 -37.90798 -35.85056 -34.93084 -34.05677 -32.61658 -31.65282 -30.94317 -27.55308 -27.42845 -26.95435 -26.49966 -23.70371 -22.74889 -21.92989 -20.59333 -20.46590 -19.95674 -19.35060 -17.76407 -17.06528 -16.58086 -16.57399 -16.28373 -15.90714 -15.38771 -15.20324 -14.87475 -14.76156 -14.53002 -14.45750 -14.32044 -13.97152 -13.57028 -13.21223 -13.17759 -13.08782 -13.05658 -12.87153 -12.67810 -12.56274 -12.30520 -12.23071 -12.13689 -12.01522 -11.90433 -11.46851 -11.42705 -11.30650 -11.15787 -11.01190 -10.69750 -10.53591 -10.39161 -10.23614 -9.99624 -9.50327 -8.01770 -6.17120 1.40916 1.44873 1.45372 1.54552 1.96411 2.40876 2.46812 3.21735 3.48102 3.72091 3.89493 3.92445 4.15316 4.26559 4.32694 4.43233 4.47202 4.53403 4.56418 4.64806 4.67154 4.72932 4.78363 4.81698 4.90481 5.02068 5.03032 5.07323 5.11599 5.13507 5.20080 5.21652 5.23384 5.30678 5.33055 5.40899 5.42647 5.52609 5.56464 5.67856 5.68324 5.73725 5.79060 5.83597 6.03141 6.16183 6.21967 6.24704 6.45121 6.87257 7.32466 7.50702 7.84509 8.97314 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020612 B = 0.003507 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.111383 B = 7981.376683 C = 8447.390412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.108 4.108 4 C 0.208 3.792 5 N -0.722 5.722 6 C 0.702 3.298 7 O -0.630 6.630 8 N -0.732 5.732 9 C 0.174 3.826 10 C 0.052 3.948 11 C -0.115 4.115 12 C -0.117 4.117 13 C -0.527 4.527 14 H 0.042 0.958 15 C 0.029 3.971 16 N -0.899 5.899 17 Si 0.944 3.056 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.129 4.129 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.402 0.598 32 H 0.401 0.599 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.041 0.959 50 H 0.080 0.920 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.667 -7.332 -11.322 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.150 4.150 3 C -0.147 4.147 4 C 0.122 3.878 5 N -0.378 5.378 6 C 0.403 3.597 7 O -0.512 6.512 8 N -0.387 5.387 9 C 0.050 3.950 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.175 4.175 13 C -0.566 4.566 14 H 0.060 0.940 15 C -0.171 4.171 16 N -0.537 5.537 17 Si 0.771 3.229 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.168 4.168 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.149 0.851 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.238 0.762 32 H 0.237 0.763 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.098 0.902 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.375 -6.555 -11.811 22.806 hybrid contribution -1.360 0.451 0.976 1.734 sum 17.015 -6.105 -10.836 21.076 Atomic orbital electron populations 1.23799 0.96920 1.00806 1.02874 1.22940 0.95292 0.98613 0.98204 1.21224 0.99212 0.95941 0.98276 1.20128 0.89386 0.95713 0.82622 1.45101 1.30010 1.35409 1.27271 1.16124 0.80137 0.82601 0.80868 1.90796 1.75797 1.32058 1.52507 1.45232 1.29806 1.32452 1.31204 1.20975 0.85192 0.91701 0.97173 1.18351 0.92700 0.93696 0.90123 1.21612 0.98596 0.96981 1.00101 1.21630 0.96864 0.97900 1.01062 1.21291 1.11557 1.11341 1.12369 0.93987 1.25433 0.99484 0.96347 0.95813 1.69913 1.38783 1.27633 1.17418 0.85725 0.80118 0.79278 0.77797 1.20129 1.20654 1.20653 1.21849 0.95502 0.97640 1.00120 1.21550 0.99024 0.97336 0.97686 1.21519 0.96954 0.94241 1.02367 1.21416 0.97072 0.99194 0.97422 1.21927 0.98602 0.97189 0.99064 0.91736 0.87827 0.85051 0.92900 0.88800 0.76156 0.76342 0.95223 0.95259 0.94630 0.92008 0.96602 0.96543 0.91955 0.94591 0.93058 0.89932 0.88716 0.89838 0.92450 0.90902 0.91776 0.92731 0.94011 0.90177 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.43 14.32 67.78 0.97 -4.46 16 2 C -0.13 -2.87 8.37 25.65 0.21 -2.65 16 3 C -0.11 -2.49 4.37 29.85 0.13 -2.36 16 4 C 0.21 4.24 0.35 3.61 0.00 4.25 16 5 N -0.72 -17.41 3.51 -438.00 -1.54 -18.95 16 6 C 0.70 24.08 7.93 179.05 1.42 25.50 16 7 O -0.63 -26.50 12.64 -3.99 -0.05 -26.55 16 8 N -0.73 -26.05 4.96 -478.54 -2.37 -28.43 16 9 C 0.17 7.71 4.50 86.38 0.39 8.10 16 10 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16 11 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 12 C -0.12 -5.28 8.08 71.99 0.58 -4.70 16 13 C -0.53 -28.46 8.01 25.60 0.21 -28.25 16 14 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 15 C 0.03 1.54 5.15 84.65 0.44 1.98 16 16 N -0.90 -48.32 9.35 21.45 0.20 -48.12 16 17 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 C -0.11 -1.43 4.61 30.60 0.14 -1.29 16 22 C -0.12 -1.42 5.75 30.59 0.18 -1.24 16 23 C -0.11 -1.60 5.92 30.60 0.18 -1.42 16 24 C -0.11 -2.35 5.77 30.58 0.18 -2.17 16 25 C -0.13 -2.97 4.56 30.58 0.14 -2.83 16 26 H 0.06 2.09 7.83 -2.91 -0.02 2.07 16 27 H 0.10 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.13 2.08 7.09 -2.91 -0.02 2.06 16 29 H 0.05 1.69 5.95 -2.39 -0.01 1.67 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.40 7.82 7.24 -92.70 -0.67 7.15 16 32 H 0.40 12.54 6.18 -92.71 -0.57 11.96 16 33 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.03 1.35 6.86 -2.38 -0.02 1.34 16 36 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 37 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 40 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 41 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 42 H 0.08 0.89 6.80 -2.39 -0.02 0.87 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.76 6.80 -2.39 -0.02 0.74 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.04 1.04 7.60 -2.39 -0.02 1.02 16 50 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.05 1.52 6.20 -2.39 -0.01 1.51 16 Total: -1.00 -62.98 378.85 3.64 -59.34 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.34 Total: 31.21 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 5.72 Total: -13.75 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -3.71 Total: -95.50 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -62.98 3.64 -59.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459240656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.620 kcal (2) G-P(sol) polarization free energy of solvation -62.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds