Wall clock time and date at job start Fri Apr 10 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46752 * 2 1 4 4 C 1.52997 * 109.47174 * 239.99806 * 2 1 3 5 5 C 1.50706 * 109.47181 * 59.99932 * 4 2 1 6 6 H 1.08000 * 119.99596 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00189 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99747 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46997 * 120.00006 * 9 7 5 12 12 H 1.48496 * 109.46799 * 239.99908 * 9 7 5 13 13 C 1.52996 * 109.46913 * 119.99550 * 2 1 3 14 14 N 1.46496 * 109.47606 * 300.00132 * 13 2 1 15 15 C 1.34771 * 120.00225 * 180.02562 * 14 13 2 16 16 O 1.21586 * 120.00254 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00028 * 180.02562 * 15 14 13 18 18 C 1.47403 * 126.02313 * 359.97072 * 17 15 14 19 19 C 1.54484 * 107.15590 * 181.50724 * 18 17 15 20 20 C 1.55957 * 102.65714 * 22.76332 * 19 18 17 21 21 H 1.09007 * 112.76986 * 203.20083 * 20 19 18 22 22 C 1.53011 * 106.58896 * 78.67589 * 20 19 18 23 23 C 1.52676 * 110.71818 * 196.85087 * 22 20 19 24 24 C 1.53246 * 108.67712 * 61.91154 * 23 22 20 25 25 C 1.52868 * 108.46071 * 296.87460 * 24 23 22 26 26 C 1.46519 * 126.02094 * 179.97438 * 17 15 14 27 27 H 1.09000 * 108.48219 * 269.68057 * 26 17 15 28 28 H 1.08997 * 109.47381 * 300.00081 * 1 2 3 29 29 H 1.09002 * 109.47369 * 60.00488 * 1 2 3 30 30 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46535 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46785 * 299.99870 * 3 2 1 33 33 H 1.08997 * 109.47244 * 59.99835 * 3 2 1 34 34 H 1.09001 * 109.46946 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47493 * 300.00438 * 4 2 1 36 36 H 0.96996 * 119.99766 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46903 * 180.02562 * 13 2 1 38 38 H 1.09000 * 109.46801 * 60.00774 * 13 2 1 39 39 H 0.97002 * 119.99495 * 0.02562 * 14 13 2 40 40 H 1.08996 * 109.90105 * 300.89380 * 18 17 15 41 41 H 1.08994 * 109.89743 * 61.95063 * 18 17 15 42 42 H 1.09004 * 110.76938 * 141.05030 * 19 18 17 43 43 H 1.08991 * 110.77606 * 264.27772 * 19 18 17 44 44 H 1.08996 * 109.23220 * 317.14829 * 22 20 19 45 45 H 1.09006 * 109.23255 * 76.56552 * 22 20 19 46 46 H 1.09004 * 109.56907 * 302.17409 * 23 22 20 47 47 H 1.08997 * 109.63049 * 181.68892 * 23 22 20 48 48 H 1.09002 * 109.67360 * 177.12026 * 24 23 22 49 49 H 1.09004 * 109.67068 * 56.62473 * 24 23 22 50 50 H 1.09000 * 109.12468 * 179.62880 * 25 24 23 51 51 H 1.09004 * 109.12172 * 298.72091 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2491 0.3993 -5.2572 10 1 0.4234 1.5656 -4.8531 11 1 2.4044 0.8662 -6.0651 12 1 0.4244 -0.5339 -6.0660 13 6 2.0400 -0.7211 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4907 3.6695 16 8 2.5766 -1.4792 3.7812 17 7 1.4279 0.1444 4.7699 18 6 0.5765 1.3476 4.7894 19 6 0.3560 1.7258 6.2709 20 6 1.5739 1.0571 6.9793 21 1 1.3942 0.8668 8.0374 22 6 2.7776 1.9690 6.7324 23 6 4.0829 1.2280 7.0120 24 6 4.1908 0.0428 6.0466 25 6 3.0382 -0.9201 6.3315 26 6 1.6993 -0.2394 6.1577 27 1 0.9163 -0.9227 6.4866 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7489 -1.2493 36 1 2.8623 -1.8819 -4.7336 37 1 3.1300 -0.7207 1.2495 38 1 1.6767 -1.7488 1.2492 39 1 0.9937 0.7579 2.3563 40 1 1.0762 2.1641 4.2683 41 1 -0.3796 1.1331 4.3122 42 1 0.3793 2.8078 6.4012 43 1 -0.5833 1.3138 6.6394 44 1 2.7692 2.3015 5.6945 45 1 2.7107 2.8372 7.3881 46 1 4.0833 0.8640 8.0395 47 1 4.9262 1.9017 6.8598 48 1 5.1417 -0.4682 6.1977 49 1 4.1253 0.3996 5.0187 50 1 3.1009 -1.7650 5.6457 51 1 3.1228 -1.2853 7.3551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514858917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:10 Heat of formation + Delta-G solvation = -55.566837 kcal Electronic energy + Delta-G solvation = -27165.475566 eV Core-core repulsion = 23677.468133 eV Total energy + Delta-G solvation = -3488.007433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97850 -38.73568 -36.93400 -35.26083 -33.46278 -32.42891 -32.03116 -29.89734 -28.33716 -27.07030 -26.49356 -26.00620 -23.60024 -23.21016 -22.45984 -21.51122 -20.19837 -19.32472 -18.10510 -17.22353 -16.50294 -16.30528 -15.61722 -15.16649 -14.85509 -14.65393 -14.41356 -14.27093 -14.02650 -13.66416 -13.36134 -13.00878 -12.77923 -12.71452 -12.51639 -12.32018 -12.09552 -12.05769 -12.04298 -11.86491 -11.60562 -11.12884 -11.04071 -11.01133 -10.82700 -10.73841 -10.63022 -10.38170 -10.34242 -10.24600 -10.21913 -9.85670 -9.46354 -9.16395 -8.89920 -8.80316 -8.35292 -8.33757 -5.98923 -4.00054 2.76264 3.30583 3.38662 3.40984 3.44271 4.03413 4.28032 4.40855 4.47029 4.49034 4.82083 4.84559 5.02641 5.10547 5.16211 5.27769 5.35482 5.36700 5.38284 5.45222 5.49576 5.53595 5.60437 5.66895 5.74436 5.76859 5.77492 5.87502 6.00993 6.07216 6.12429 6.18295 6.20027 6.26817 6.31968 6.36886 6.44165 6.56216 6.64640 6.67455 6.88280 7.08828 7.09221 7.16315 7.24809 7.66204 7.78647 8.00065 8.20953 8.42089 8.87149 9.05026 9.63000 11.12610 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.002949 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.520649 B = 9493.247593 C = 9809.283190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.736 5.736 15 C 0.720 3.280 16 O -0.586 6.586 17 N -0.632 5.632 18 C 0.099 3.901 19 C -0.129 4.129 20 C -0.098 4.098 21 H 0.097 0.903 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.109 4.109 25 C -0.135 4.135 26 C 0.167 3.833 27 H 0.057 0.943 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.259 0.741 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.392 0.608 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.102 0.898 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 8.140 23.632 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.182 4.182 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.024 3.976 14 N -0.391 5.391 15 C 0.423 3.577 16 O -0.464 6.464 17 N -0.372 5.372 18 C -0.024 4.024 19 C -0.167 4.167 20 C -0.118 4.118 21 H 0.115 0.885 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.147 4.147 25 C -0.173 4.173 26 C 0.062 3.938 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.227 0.773 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.120 0.880 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.687 7.236 23.458 24.695 hybrid contribution -0.656 0.866 -1.052 1.512 sum -3.343 8.102 22.406 24.059 Atomic orbital electron populations 1.21744 0.95350 1.01109 1.00051 1.20911 0.95430 0.95842 0.95093 1.21743 1.00512 0.95947 1.00046 1.19089 0.96369 0.95235 0.89430 1.21225 1.31067 1.12017 0.90518 0.92227 1.25016 0.95343 0.95091 0.99078 1.69978 1.37010 1.23073 1.23306 0.86599 0.78596 0.79677 0.83485 1.19816 1.21141 1.21149 1.21473 0.98598 0.95618 0.81901 1.45415 1.56099 1.33147 1.04450 1.15494 0.80104 0.82497 0.79641 1.90826 1.42991 1.27566 1.85054 1.47383 1.54387 1.30489 1.04944 1.22041 0.94629 0.87907 0.97832 1.22891 0.98611 1.01304 0.93878 1.22473 0.95139 0.94982 0.99157 0.88487 1.21489 0.93872 0.97469 1.01898 1.21553 0.97059 0.97640 0.99514 1.21404 0.97973 0.95814 0.99466 1.21548 0.92911 1.00587 1.02249 1.20810 0.97628 0.95192 0.80126 0.92494 0.95434 0.91503 0.93382 0.93389 0.91508 0.95438 0.96321 0.96312 0.93107 0.92081 0.92069 0.77265 0.91817 0.91672 0.90014 0.90654 0.91746 0.92195 0.92133 0.92268 0.92278 0.92008 0.87953 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.15 2.70 4.56 -4.05 -0.02 2.68 16 14 N -0.74 -11.35 4.92 -65.23 -0.32 -11.67 16 15 C 0.72 11.52 7.76 -86.92 -0.67 10.85 16 16 O -0.59 -11.34 13.83 5.29 0.07 -11.27 16 17 N -0.63 -7.73 3.00 -170.58 -0.51 -8.24 16 18 C 0.10 0.89 5.43 -2.77 -0.02 0.88 16 19 C -0.13 -0.86 6.32 -24.37 -0.15 -1.02 16 20 C -0.10 -0.75 3.68 -88.51 -0.33 -1.08 16 21 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 22 C -0.11 -0.89 4.89 -26.89 -0.13 -1.02 16 23 C -0.12 -1.06 5.93 -26.77 -0.16 -1.22 16 24 C -0.11 -1.25 5.86 -26.67 -0.16 -1.41 16 25 C -0.14 -1.58 4.82 -27.70 -0.13 -1.72 16 26 C 0.17 1.78 2.86 -68.30 -0.20 1.58 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 29 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 33 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.39 5.27 5.18 -40.82 -0.21 5.06 16 40 H 0.06 0.55 7.81 -51.93 -0.41 0.15 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.44 7.97 -51.93 -0.41 0.03 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.61 6.89 -51.93 -0.36 0.25 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.87 7.51 -51.93 -0.39 0.48 16 50 H 0.10 1.55 5.64 -51.93 -0.29 1.26 16 51 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -30.68 375.88 -10.55 -41.23 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -9.25 Total: 2.25 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.92 Total: -8.40 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.10 Total: -45.69 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.68 -10.55 -41.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514858917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.338 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds