Wall clock time and date at job start Fri Apr 10 2020 22:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46752 * 2 1 4 4 C 1.52997 * 109.47174 * 239.99806 * 2 1 3 5 5 C 1.50706 * 109.47181 * 59.99932 * 4 2 1 6 6 H 1.08000 * 119.99596 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00189 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99747 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46997 * 120.00006 * 9 7 5 12 12 H 1.48496 * 109.46799 * 239.99908 * 9 7 5 13 13 C 1.52996 * 109.46913 * 119.99550 * 2 1 3 14 14 N 1.46496 * 109.47606 * 300.00132 * 13 2 1 15 15 C 1.34771 * 120.00225 * 180.02562 * 14 13 2 16 16 O 1.21586 * 120.00254 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00028 * 180.02562 * 15 14 13 18 18 C 1.47403 * 126.02313 * 359.97072 * 17 15 14 19 19 C 1.54484 * 107.15590 * 181.50724 * 18 17 15 20 20 C 1.55957 * 102.65714 * 22.76332 * 19 18 17 21 21 H 1.09007 * 112.76986 * 203.20083 * 20 19 18 22 22 C 1.53011 * 106.58896 * 78.67589 * 20 19 18 23 23 C 1.52676 * 110.71818 * 196.85087 * 22 20 19 24 24 C 1.53246 * 108.67712 * 61.91154 * 23 22 20 25 25 C 1.52868 * 108.46071 * 296.87460 * 24 23 22 26 26 C 1.46519 * 126.02094 * 179.97438 * 17 15 14 27 27 H 1.09000 * 108.48219 * 269.68057 * 26 17 15 28 28 H 1.08997 * 109.47381 * 300.00081 * 1 2 3 29 29 H 1.09002 * 109.47369 * 60.00488 * 1 2 3 30 30 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46535 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46785 * 299.99870 * 3 2 1 33 33 H 1.08997 * 109.47244 * 59.99835 * 3 2 1 34 34 H 1.09001 * 109.46946 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47493 * 300.00438 * 4 2 1 36 36 H 0.96996 * 119.99766 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46903 * 180.02562 * 13 2 1 38 38 H 1.09000 * 109.46801 * 60.00774 * 13 2 1 39 39 H 0.97002 * 119.99495 * 0.02562 * 14 13 2 40 40 H 1.08996 * 109.90105 * 300.89380 * 18 17 15 41 41 H 1.08994 * 109.89743 * 61.95063 * 18 17 15 42 42 H 1.09004 * 110.76938 * 141.05030 * 19 18 17 43 43 H 1.08991 * 110.77606 * 264.27772 * 19 18 17 44 44 H 1.08996 * 109.23220 * 317.14829 * 22 20 19 45 45 H 1.09006 * 109.23255 * 76.56552 * 22 20 19 46 46 H 1.09004 * 109.56907 * 302.17409 * 23 22 20 47 47 H 1.08997 * 109.63049 * 181.68892 * 23 22 20 48 48 H 1.09002 * 109.67360 * 177.12026 * 24 23 22 49 49 H 1.09004 * 109.67068 * 56.62473 * 24 23 22 50 50 H 1.09000 * 109.12468 * 179.62880 * 25 24 23 51 51 H 1.09004 * 109.12172 * 298.72091 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2491 0.3993 -5.2572 10 1 0.4234 1.5656 -4.8531 11 1 2.4044 0.8662 -6.0651 12 1 0.4244 -0.5339 -6.0660 13 6 2.0400 -0.7211 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4907 3.6695 16 8 2.5766 -1.4792 3.7812 17 7 1.4279 0.1444 4.7699 18 6 0.5765 1.3476 4.7894 19 6 0.3560 1.7258 6.2709 20 6 1.5739 1.0571 6.9793 21 1 1.3942 0.8668 8.0374 22 6 2.7776 1.9690 6.7324 23 6 4.0829 1.2280 7.0120 24 6 4.1908 0.0428 6.0466 25 6 3.0382 -0.9201 6.3315 26 6 1.6993 -0.2394 6.1577 27 1 0.9163 -0.9227 6.4866 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7489 -1.2493 36 1 2.8623 -1.8819 -4.7336 37 1 3.1300 -0.7207 1.2495 38 1 1.6767 -1.7488 1.2492 39 1 0.9937 0.7579 2.3563 40 1 1.0762 2.1641 4.2683 41 1 -0.3796 1.1331 4.3122 42 1 0.3793 2.8078 6.4012 43 1 -0.5833 1.3138 6.6394 44 1 2.7692 2.3015 5.6945 45 1 2.7107 2.8372 7.3881 46 1 4.0833 0.8640 8.0395 47 1 4.9262 1.9017 6.8598 48 1 5.1417 -0.4682 6.1977 49 1 4.1253 0.3996 5.0187 50 1 3.1009 -1.7650 5.6457 51 1 3.1228 -1.2853 7.3551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514858917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:09 Heat of formation + Delta-G solvation = -72.799357 kcal Electronic energy + Delta-G solvation = -27166.222825 eV Core-core repulsion = 23677.468133 eV Total energy + Delta-G solvation = -3488.754692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93279 -39.94886 -38.43965 -36.16283 -35.12754 -33.87298 -33.21486 -30.82324 -29.12714 -28.98592 -27.98252 -27.46851 -25.08142 -24.11375 -23.72801 -22.27460 -21.19821 -20.48000 -19.50035 -18.42714 -18.31162 -17.37869 -16.90196 -16.45208 -16.20653 -15.72318 -15.60903 -15.33535 -15.19742 -14.89333 -14.69728 -14.38012 -14.19692 -13.95312 -13.85663 -13.46725 -13.28548 -13.08833 -12.89466 -12.77087 -12.69920 -12.61664 -12.56062 -12.36387 -12.27878 -12.23206 -11.95430 -11.81160 -11.55383 -11.48960 -11.29125 -11.02052 -10.93355 -10.85960 -10.52801 -10.52331 -10.14169 -9.38317 -8.13966 -6.21963 1.41929 1.42666 1.54644 1.65943 2.19683 2.44255 3.05153 3.20562 3.57911 3.64833 3.81767 3.96691 4.07816 4.08859 4.20216 4.21326 4.23838 4.40762 4.45988 4.54458 4.60441 4.64282 4.67839 4.71872 4.75681 4.76584 4.82402 4.94488 5.04692 5.05818 5.08973 5.10454 5.13790 5.19100 5.25968 5.30265 5.34673 5.38338 5.39389 5.48026 5.48420 5.51737 5.55694 5.62816 5.71737 5.79319 5.89648 6.15187 6.30644 6.92997 7.05401 7.45836 7.64296 8.98950 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.002949 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.520649 B = 9493.247593 C = 9809.283190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.064 4.064 3 C -0.118 4.118 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.256 1.256 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.164 3.836 14 N -0.726 5.726 15 C 0.713 3.287 16 O -0.628 6.628 17 N -0.628 5.628 18 C 0.088 3.912 19 C -0.118 4.118 20 C -0.088 4.088 21 H 0.123 0.877 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.133 4.133 26 C 0.156 3.844 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.065 0.935 34 H -0.015 1.015 35 H -0.015 1.015 36 H 0.259 0.741 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.405 0.595 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.027 0.973 50 H 0.060 0.940 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 11.418 25.931 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.175 4.175 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.039 3.961 14 N -0.382 5.382 15 C 0.415 3.585 16 O -0.510 6.510 17 N -0.366 5.366 18 C -0.034 4.034 19 C -0.155 4.155 20 C -0.107 4.107 21 H 0.141 0.859 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.145 4.145 25 C -0.171 4.171 26 C 0.052 3.948 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.003 0.997 35 H 0.004 0.996 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.243 0.757 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.046 0.954 50 H 0.078 0.922 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.953 10.572 25.800 28.319 hybrid contribution 0.089 -0.222 -1.696 1.713 sum -4.863 10.350 24.104 26.679 Atomic orbital electron populations 1.21661 0.93533 1.00888 1.01479 1.20710 0.96745 0.96283 0.92680 1.21659 0.99794 0.94637 1.01459 1.18960 0.94226 0.94189 0.92295 1.21618 1.30361 1.12055 0.90985 0.90813 1.25968 0.95665 0.95873 1.02776 1.70137 1.38829 1.25049 1.24037 0.85473 0.78046 0.78834 0.79152 1.17909 1.21060 1.21069 1.21014 0.97211 0.94869 0.82992 1.45075 1.56299 1.33319 1.03524 1.15679 0.79977 0.82359 0.80444 1.90817 1.44805 1.29596 1.85781 1.47417 1.53825 1.30941 1.04443 1.22372 0.94296 0.86484 1.00237 1.22903 0.98553 1.02613 0.91456 1.22497 0.95493 0.92733 0.99963 0.85885 1.21496 0.93351 0.98224 1.01496 1.21528 0.97971 0.96364 0.99371 1.21352 0.97653 0.97070 0.98415 1.21467 0.93998 0.99402 1.02260 1.21064 0.96702 0.97252 0.79784 0.92362 0.91558 0.92364 0.94507 0.94589 0.92354 0.91599 0.99675 0.99618 0.93181 0.94235 0.94097 0.75738 0.91236 0.90795 0.87788 0.89276 0.93399 0.89680 0.90395 0.92062 0.93025 0.95388 0.92153 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 2 C -0.06 -2.49 0.54 -52.18 -0.03 -2.51 16 3 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.51 -27.70 7.65 25.60 0.20 -27.50 16 6 H 0.07 3.72 5.68 -2.91 -0.02 3.70 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 8 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 9 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 C 0.16 6.27 4.56 86.38 0.39 6.66 16 14 N -0.73 -22.23 4.92 -478.55 -2.36 -24.59 16 15 C 0.71 23.20 7.76 179.06 1.39 24.59 16 16 O -0.63 -25.84 13.83 -3.99 -0.06 -25.90 16 17 N -0.63 -14.66 3.00 -811.87 -2.43 -17.09 16 18 C 0.09 1.31 5.43 86.71 0.47 1.78 16 19 C -0.12 -1.03 6.32 32.12 0.20 -0.83 16 20 C -0.09 -1.00 3.68 -9.43 -0.03 -1.04 16 21 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 22 C -0.11 -1.38 4.89 30.49 0.15 -1.23 16 23 C -0.11 -1.78 5.93 30.57 0.18 -1.60 16 24 C -0.11 -2.49 5.86 30.63 0.18 -2.31 16 25 C -0.13 -3.13 4.82 29.97 0.14 -2.99 16 26 C 0.16 3.08 2.86 44.74 0.13 3.21 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 29 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 2.13 6.62 -2.39 -0.02 2.11 16 33 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 34 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.41 10.03 5.18 -92.71 -0.48 9.55 16 40 H 0.07 0.98 7.81 -2.39 -0.02 0.96 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 0.54 7.97 -2.38 -0.02 0.52 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.05 0.78 6.89 -2.39 -0.02 0.77 16 45 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.03 0.82 7.51 -2.38 -0.02 0.80 16 50 H 0.06 1.96 5.64 -2.39 -0.01 1.94 16 51 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -71.82 375.88 2.99 -68.83 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.41 Total: 18.79 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.11 Total: -8.43 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -4.50 Total: -99.14 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -71.82 2.99 -68.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514858917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.973 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds