Wall clock time and date at job start Fri Apr 10 2020 22:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47366 * 2 1 4 4 C 1.53002 * 109.47406 * 119.99775 * 2 1 3 5 5 N 1.46502 * 109.47307 * 178.57639 * 4 2 1 6 6 C 1.34772 * 120.00183 * 96.78765 * 5 4 2 7 7 O 1.21285 * 119.99972 * 185.02388 * 6 5 4 8 8 C 1.50699 * 120.00082 * 5.02608 * 6 5 4 9 9 N 1.46901 * 109.47422 * 180.66635 * 8 6 5 10 10 C 1.46851 * 110.99897 * 294.21059 * 9 8 6 11 11 C 1.53032 * 109.52329 * 174.15643 * 10 9 8 12 12 C 1.53124 * 109.27753 * 59.18006 * 11 10 9 13 13 C 1.50697 * 109.57556 * 182.40566 * 12 11 10 14 14 H 1.08007 * 120.00216 * 119.71102 * 13 12 11 15 15 C 1.37875 * 120.00325 * 299.71677 * 13 12 11 16 16 N 1.31512 * 119.99812 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00293 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46990 * 59.99983 * 17 15 13 19 19 H 1.48503 * 109.47296 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46984 * 299.99983 * 17 15 13 21 21 C 1.53121 * 109.15886 * 302.34463 * 12 11 10 22 22 C 1.46846 * 111.00257 * 169.99870 * 9 8 6 23 23 C 1.46497 * 119.99733 * 276.78597 * 5 4 2 24 24 C 1.52997 * 117.49928 * 196.35201 * 23 5 4 25 25 C 1.52999 * 60.00056 * 252.50908 * 24 23 5 26 26 H 1.09002 * 109.47255 * 300.00245 * 1 2 3 27 27 H 1.09002 * 109.47145 * 60.00058 * 1 2 3 28 28 H 1.08999 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47329 * 240.00192 * 2 1 3 30 30 H 1.09000 * 109.46919 * 64.10652 * 3 2 1 31 31 H 1.08997 * 109.47619 * 184.11546 * 3 2 1 32 32 H 1.09005 * 109.46977 * 304.11701 * 3 2 1 33 33 H 1.08995 * 109.46817 * 58.57145 * 4 2 1 34 34 H 1.09001 * 109.46886 * 298.57343 * 4 2 1 35 35 H 1.08999 * 109.47128 * 300.66158 * 8 6 5 36 36 H 1.09001 * 109.47460 * 60.66291 * 8 6 5 37 37 H 1.08995 * 109.45905 * 294.17815 * 10 9 8 38 38 H 1.09000 * 109.46197 * 54.13871 * 10 9 8 39 39 H 1.08993 * 109.50636 * 299.23826 * 11 10 9 40 40 H 1.09003 * 109.50256 * 179.11876 * 11 10 9 41 41 H 1.08996 * 109.52546 * 62.24641 * 12 11 10 42 42 H 0.97000 * 120.00253 * 179.97438 * 16 15 13 43 43 H 1.09003 * 109.50047 * 297.71307 * 21 12 11 44 44 H 1.09003 * 109.53288 * 177.61920 * 21 12 11 45 45 H 1.08996 * 109.46247 * 305.85565 * 22 9 8 46 46 H 1.08995 * 109.46272 * 65.83351 * 22 9 8 47 47 H 1.09002 * 115.54957 * 342.05968 * 23 5 4 48 48 H 1.09004 * 117.49897 * 0.02562 * 24 23 5 49 49 H 1.09004 * 117.50390 * 145.02034 * 24 23 5 50 50 H 1.08997 * 117.49834 * 252.50825 * 25 24 23 51 51 H 1.09001 * 117.49605 * 107.48904 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5047 -0.7510 1.2322 6 6 4.2055 0.1756 1.9153 7 8 5.4148 0.2070 1.8283 8 6 3.4867 1.1724 2.7874 9 7 4.4649 2.0769 3.4062 10 6 5.3352 1.3513 4.3403 11 6 6.4297 2.2897 4.8535 12 6 5.7815 3.4863 5.5553 13 6 6.8515 4.4444 6.0116 14 1 6.8624 5.4585 5.6403 15 6 7.8166 4.0263 6.9031 16 7 7.8032 2.7916 7.3556 17 14 9.1434 5.2137 7.4682 18 1 8.5123 6.3769 8.1421 19 1 10.0522 4.5245 8.4192 20 1 9.9200 5.6839 6.2930 21 6 4.8433 4.1960 4.5752 22 6 3.7948 3.2024 4.0700 23 6 4.2074 -1.7879 0.4726 24 6 5.6878 -2.0127 0.7865 25 6 5.2778 -1.3326 -0.5213 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7380 1.9346 0.9245 31 1 3.1275 1.4434 -0.0737 32 1 1.6177 1.9772 -0.8508 33 1 1.6560 -1.7411 1.2622 34 1 1.6977 -0.1927 2.1390 35 1 2.7905 1.7509 2.1801 36 1 2.9370 0.6440 3.5663 37 1 4.7436 0.9892 5.1810 38 1 5.7931 0.5054 3.8275 39 1 7.0304 2.6414 4.0147 40 1 7.0661 1.7551 5.5587 41 1 5.2123 3.1386 6.4173 42 1 8.4824 2.4973 7.9825 43 1 5.4191 4.5777 3.7319 44 1 4.3463 5.0239 5.0809 45 1 3.1339 3.7009 3.3610 46 1 3.2106 2.8316 4.9121 47 1 3.6111 -2.6605 0.2054 48 1 6.1389 -1.3892 1.5585 49 1 6.0659 -3.0332 0.7260 50 1 5.3860 -1.9057 -1.4421 51 1 5.4592 -0.2615 -0.6099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543811103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:10:17 Heat of formation + Delta-G solvation = 0.113964 kcal Electronic energy + Delta-G solvation = -27275.945575 eV Core-core repulsion = 23790.352642 eV Total energy + Delta-G solvation = -3485.592933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60215 -38.06486 -36.87945 -36.03529 -33.72929 -32.95790 -31.29548 -29.67979 -27.99577 -27.16330 -26.25478 -24.86771 -22.67717 -22.30735 -22.02665 -21.24815 -20.70014 -18.75130 -18.52033 -17.20017 -16.39320 -16.21422 -15.78826 -15.03904 -14.76488 -14.72511 -14.37043 -14.15152 -14.06672 -13.64220 -13.35040 -12.93420 -12.86094 -12.65189 -12.46098 -12.30974 -12.19806 -12.15360 -11.97557 -11.55749 -11.30305 -11.24281 -11.16043 -10.93807 -10.84611 -10.81464 -10.61280 -10.46712 -10.34584 -10.12882 -9.87470 -9.37941 -9.16920 -8.88586 -8.53782 -8.38532 -8.19764 -7.69063 -5.88881 -3.94021 2.69199 2.80316 3.38529 3.42724 3.45754 3.90984 4.31906 4.48302 4.52055 4.59753 4.63821 4.80211 4.88174 5.01629 5.10521 5.11998 5.21723 5.23913 5.36431 5.41033 5.43469 5.50682 5.53920 5.63096 5.66208 5.74888 5.75995 5.81915 5.92299 6.00004 6.07018 6.12170 6.17725 6.29155 6.35707 6.44416 6.71027 6.75510 6.80784 6.92994 7.13016 7.25169 7.34057 7.54829 7.68614 7.76747 7.91600 8.15747 8.26537 8.38515 8.57528 9.09258 9.69750 11.17289 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.003416 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.036714 B = 8195.712344 C = 9064.726769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.153 4.153 4 C 0.115 3.885 5 N -0.592 5.592 6 C 0.518 3.482 7 O -0.500 6.500 8 C 0.026 3.974 9 N -0.517 5.517 10 C 0.053 3.947 11 C -0.099 4.099 12 C 0.047 3.953 13 C -0.510 4.510 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.105 4.105 22 C 0.062 3.938 23 C 0.072 3.928 24 C -0.192 4.192 25 C -0.187 4.187 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.014 0.986 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.259 0.741 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.024 0.976 47 H 0.123 0.877 48 H 0.139 0.861 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.530 -10.104 -15.034 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.210 4.210 4 C -0.008 4.008 5 N -0.326 5.326 6 C 0.307 3.693 7 O -0.374 6.374 8 C -0.105 4.105 9 N -0.242 5.242 10 C -0.073 4.073 11 C -0.138 4.138 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.071 0.929 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.143 4.143 22 C -0.066 4.066 23 C -0.033 4.033 24 C -0.230 4.230 25 C -0.225 4.225 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.042 0.958 47 H 0.140 0.860 48 H 0.157 0.843 49 H 0.104 0.896 50 H 0.109 0.891 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.471 -9.995 -15.284 23.301 hybrid contribution 0.058 0.160 0.854 0.871 sum -14.413 -9.835 -14.430 22.643 Atomic orbital electron populations 1.21789 0.94526 1.01806 1.02244 1.21543 0.95788 0.97136 0.98826 1.22003 1.01746 0.95392 1.01817 1.21711 0.79197 1.01371 0.98559 1.47364 1.06152 1.29060 1.49976 1.20735 0.87914 0.80844 0.79799 1.90550 1.13905 1.69958 1.63035 1.22284 0.95420 0.95014 0.97791 1.61770 1.18656 1.08969 1.34811 1.22435 0.95274 0.97760 0.91863 1.21594 0.96117 0.97017 0.99025 1.18696 0.93212 0.93011 0.92186 1.21170 1.11185 0.97302 1.25187 0.92856 1.24964 0.97729 0.95093 0.96219 1.69873 1.35022 1.16016 1.32184 0.86704 0.81872 0.81176 0.78485 1.20435 1.21415 1.20309 1.21667 0.96531 0.96382 0.99719 1.22148 0.96417 0.92352 0.95681 1.21579 0.89694 0.92412 0.99601 1.23859 0.95936 1.01870 1.01302 1.23209 1.03801 1.01929 0.93584 0.92381 0.92340 0.92602 0.90733 0.92247 0.92217 0.92501 0.90547 0.89901 0.87907 0.92961 0.96769 0.90813 0.93735 0.89142 0.96284 0.93113 0.92401 0.93134 0.92519 0.95786 0.85961 0.84301 0.89585 0.89118 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 2 C -0.11 -0.83 3.14 -90.62 -0.28 -1.12 16 3 C -0.15 -1.36 7.68 37.16 0.29 -1.08 16 4 C 0.11 0.93 4.96 -4.04 -0.02 0.91 16 5 N -0.59 -6.73 2.54 -166.11 -0.42 -7.15 16 6 C 0.52 7.75 5.85 -10.99 -0.06 7.69 16 7 O -0.50 -9.32 10.05 5.55 0.06 -9.27 16 8 C 0.03 0.38 3.76 -4.98 -0.02 0.36 16 9 N -0.52 -9.70 4.40 -236.12 -1.04 -10.74 16 10 C 0.05 1.15 5.10 -3.83 -0.02 1.13 16 11 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 12 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 13 C -0.51 -14.46 8.56 -34.44 -0.29 -14.75 16 14 H 0.05 1.49 7.75 -52.48 -0.41 1.08 16 15 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 16 N -0.89 -26.18 11.37 55.43 0.63 -25.55 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 22 C 0.06 1.12 5.46 -3.84 -0.02 1.10 16 23 C 0.07 0.77 6.62 -67.93 -0.45 0.32 16 24 C -0.19 -2.43 9.63 -26.73 -0.26 -2.69 16 25 C -0.19 -2.16 9.88 -26.73 -0.26 -2.43 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.52 6.06 -51.93 -0.31 0.21 16 31 H 0.06 0.68 6.93 -51.93 -0.36 0.32 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.08 0.64 6.21 -51.93 -0.32 0.32 16 35 H 0.10 1.26 4.41 -51.93 -0.23 1.03 16 36 H 0.05 0.71 7.64 -51.93 -0.40 0.31 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 1.61 5.76 -51.93 -0.30 1.31 16 39 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 2.53 6.18 -51.93 -0.32 2.21 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.87 8.01 -51.93 -0.42 0.46 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.14 2.27 5.19 -52.23 -0.27 2.00 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.10 1.37 7.62 -51.93 -0.40 0.97 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -31.20 379.16 -10.93 -42.13 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -9.21 Total: 1.43 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.64 Total: -13.46 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.83 Total: -43.43 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.27 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.20 -10.93 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543811103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.243 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds