Wall clock time and date at job start Fri Apr 10 2020 22:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46791 * 2 1 4 4 C 1.52997 * 109.47599 * 120.00166 * 2 1 3 5 5 H 1.09003 * 110.06553 * 300.25545 * 4 2 1 6 6 N 1.47907 * 109.91393 * 61.45180 * 4 2 1 7 7 C 1.48536 * 105.81586 * 144.68509 * 6 4 2 8 8 C 1.54934 * 103.22807 * 320.79273 * 7 6 4 9 9 C 1.53987 * 109.92118 * 179.04448 * 4 2 1 10 10 H 1.08997 * 110.30734 * 358.33991 * 9 4 2 11 11 C 1.50700 * 110.39254 * 120.46542 * 9 4 2 12 12 O 1.21284 * 119.99918 * 357.21612 * 11 9 4 13 13 N 1.34780 * 119.99782 * 177.22240 * 11 9 4 14 14 C 1.46924 * 120.63294 * 359.71767 * 13 11 9 15 15 C 1.53621 * 108.54517 * 126.36884 * 14 13 11 16 16 C 1.53049 * 109.23887 * 54.85466 * 15 14 13 17 17 C 1.53005 * 109.45669 * 178.49014 * 16 15 14 18 18 C 1.50700 * 109.47224 * 295.06851 * 17 16 15 19 19 H 1.07998 * 119.99680 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00050 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99777 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99903 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47518 * 90.00218 * 22 20 18 24 24 H 1.48505 * 109.47010 * 210.00423 * 22 20 18 25 25 H 1.48500 * 109.47244 * 329.99975 * 22 20 18 26 26 C 1.53032 * 109.54010 * 298.50973 * 16 15 14 27 27 C 1.46928 * 120.62800 * 179.97438 * 13 11 9 28 28 H 1.09003 * 109.47081 * 299.99591 * 1 2 3 29 29 H 1.08997 * 109.47501 * 59.99765 * 1 2 3 30 30 H 1.08999 * 109.46933 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47081 * 240.00409 * 2 1 3 32 32 H 1.09005 * 109.46806 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47808 * 300.00291 * 3 2 1 34 34 H 1.09003 * 109.46974 * 60.00344 * 3 2 1 35 35 H 1.00900 * 110.99568 * 24.17646 * 6 4 2 36 36 H 1.08997 * 110.66431 * 79.23438 * 7 6 4 37 37 H 1.09002 * 110.66249 * 202.18879 * 7 6 4 38 38 H 1.08997 * 110.72246 * 155.77225 * 8 7 6 39 39 H 1.08992 * 110.72769 * 278.87569 * 8 7 6 40 40 H 1.09002 * 109.58198 * 246.20587 * 14 13 11 41 41 H 1.08997 * 109.58423 * 6.62708 * 14 13 11 42 42 H 1.08998 * 109.63459 * 294.86775 * 15 14 13 43 43 H 1.08995 * 109.46165 * 174.73814 * 15 14 13 44 44 H 1.08997 * 109.45521 * 58.53519 * 16 15 14 45 45 H 1.08996 * 109.47014 * 55.06969 * 17 16 15 46 46 H 1.09002 * 109.46507 * 175.07118 * 17 16 15 47 47 H 0.96997 * 119.99537 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.50135 * 301.41588 * 26 16 15 49 49 H 1.08994 * 109.50111 * 181.31668 * 26 16 15 50 50 H 1.09001 * 109.58607 * 353.37191 * 27 13 11 51 51 H 1.08999 * 109.58739 * 113.79642 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6784 -0.2177 2.1457 6 7 1.5815 -2.1274 1.2416 7 6 2.6847 -2.9163 1.8474 8 6 3.9574 -2.2471 1.2704 9 6 3.5797 -0.7482 1.2475 10 1 3.9654 -0.2746 0.3447 11 6 4.1183 -0.0543 2.4720 12 8 3.3561 0.4683 3.2575 13 7 5.4471 -0.0144 2.6942 14 6 6.3826 -0.6481 1.7550 15 6 7.4287 0.3935 1.3299 16 6 8.0924 0.9801 2.5780 17 6 9.1618 1.9910 2.1590 18 6 10.2633 1.2787 1.4172 19 1 10.2061 0.2117 1.2599 20 6 11.3441 1.9890 0.9394 21 7 11.4139 3.2882 1.1315 22 14 12.7091 1.1061 0.0193 23 1 12.3958 1.0869 -1.4321 24 1 13.9943 1.8169 0.2390 25 1 12.8224 -0.2875 0.5196 26 6 7.0375 1.6806 3.4374 27 6 5.9873 0.6588 3.8832 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9565 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.3876 -2.4394 0.3018 36 1 2.6652 -2.8333 2.9340 37 1 2.6236 -3.9607 1.5415 38 1 4.8132 -2.4193 1.9230 39 1 4.1622 -2.6115 0.2638 40 1 6.8767 -1.4884 2.2427 41 1 5.8382 -1.0000 0.8788 42 1 6.9437 1.1910 0.7669 43 1 8.1844 -0.0843 0.7065 44 1 8.5560 0.1788 3.1533 45 1 8.7152 2.7446 1.5104 46 1 9.5736 2.4727 3.0459 47 1 12.1745 3.7879 0.7957 48 1 6.5563 2.4659 2.8545 49 1 7.5147 2.1182 4.3142 50 1 5.1821 1.1694 4.4115 51 1 6.4499 -0.0769 4.5412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581133308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:02 Heat of formation + Delta-G solvation = -61.606934 kcal Electronic energy + Delta-G solvation = -27126.228080 eV Core-core repulsion = 23637.958728 eV Total energy + Delta-G solvation = -3488.269352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84519 -38.70376 -37.10943 -34.87183 -34.02333 -32.31940 -31.32156 -30.04213 -28.36220 -27.98410 -27.08656 -24.85044 -23.11985 -22.87750 -22.02512 -21.36056 -20.28283 -19.53262 -18.70627 -16.76149 -16.61907 -16.35019 -16.09983 -15.00397 -14.92595 -14.65647 -14.54254 -13.91793 -13.85177 -13.69658 -13.39790 -13.29787 -13.06130 -12.92607 -12.78970 -12.40174 -12.24399 -12.16133 -11.86118 -11.67539 -11.45999 -11.31528 -11.21422 -11.09882 -11.02123 -10.85150 -10.76595 -10.71448 -10.67636 -10.48836 -10.16735 -9.77909 -9.55712 -9.29209 -9.01103 -8.79452 -8.40343 -8.36505 -6.03773 -4.06100 2.70211 3.10627 3.27276 3.34527 3.36483 3.91873 4.37539 4.40879 4.41372 4.61705 4.76977 4.82832 4.85874 4.98809 5.13674 5.21443 5.30797 5.33558 5.36769 5.40211 5.43510 5.48662 5.53149 5.56844 5.60559 5.67820 5.72039 5.73011 5.76744 5.81449 5.92366 5.95667 6.02815 6.05910 6.15954 6.27876 6.34195 6.35039 6.47443 6.54041 6.65930 6.91752 6.94438 7.06374 7.16041 7.55781 7.62765 7.77203 7.95768 8.27505 8.37816 9.00406 9.57880 11.07464 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.003138 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.466818 B = 8919.604476 C = 9003.728815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.148 4.148 4 C 0.086 3.914 5 H 0.111 0.889 6 N -0.665 5.665 7 C 0.043 3.957 8 C -0.154 4.154 9 C -0.138 4.138 10 H 0.104 0.896 11 C 0.524 3.476 12 O -0.546 6.546 13 N -0.604 5.604 14 C 0.101 3.899 15 C -0.119 4.119 16 C -0.080 4.080 17 C 0.028 3.972 18 C -0.517 4.517 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.129 4.129 27 C 0.112 3.888 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.333 0.667 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.202 -10.568 -1.794 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.024 4.024 5 H 0.129 0.871 6 N -0.291 5.291 7 C -0.087 4.087 8 C -0.193 4.193 9 C -0.161 4.161 10 H 0.122 0.878 11 C 0.312 3.688 12 O -0.424 6.424 13 N -0.336 5.336 14 C -0.022 4.022 15 C -0.157 4.157 16 C -0.099 4.099 17 C -0.009 4.009 18 C -0.555 4.555 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.167 4.167 27 C -0.010 4.010 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.948 -10.112 -0.802 21.492 hybrid contribution 1.897 -0.309 -1.373 2.362 sum -17.051 -10.421 -2.175 20.102 Atomic orbital electron populations 1.21759 0.94370 1.02121 1.01579 1.21377 0.96718 0.96773 0.96823 1.21852 1.01141 0.95455 1.02139 1.22559 0.89895 0.89789 1.00151 0.87106 1.62938 1.39241 1.02144 1.24814 1.23124 0.87877 0.97116 1.00583 1.23268 1.00400 0.93111 1.02502 1.22629 0.98676 0.96895 0.97913 0.87821 1.20303 0.81870 0.79694 0.86952 1.90635 1.56675 1.47212 1.47857 1.48131 1.05451 1.55050 1.24987 1.22144 0.91512 0.96247 0.92282 1.21986 0.96906 0.97693 0.99111 1.21188 0.95325 0.99049 0.94338 1.19122 0.91962 0.93480 0.96363 1.21226 1.04747 0.94210 1.35338 0.92630 1.25026 0.98268 0.94819 0.96355 1.69966 1.30697 1.06356 1.46392 0.86648 0.81732 0.79760 0.80172 1.20730 1.21276 1.19905 1.22014 0.96386 0.97681 1.00631 1.21661 0.97294 0.95481 0.86581 0.92453 0.93048 0.92084 0.91535 0.92673 0.92518 0.92081 0.85071 0.90170 0.90510 0.89889 0.90380 0.91528 0.90307 0.92316 0.89757 0.92370 0.96675 0.96584 0.93020 0.92125 0.91136 0.89690 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.04 37.16 0.34 -0.86 16 2 C -0.10 -0.90 2.17 -90.62 -0.20 -1.10 16 3 C -0.15 -1.51 8.95 37.16 0.33 -1.18 16 4 C 0.09 0.93 2.56 -66.64 -0.17 0.76 16 5 H 0.11 1.56 6.43 -51.93 -0.33 1.23 16 6 N -0.66 -6.32 6.83 -103.13 -0.70 -7.03 16 7 C 0.04 0.38 7.55 -1.90 -0.01 0.37 16 8 C -0.15 -1.39 5.19 -24.87 -0.13 -1.52 16 9 C -0.14 -1.53 1.52 -90.42 -0.14 -1.66 16 10 H 0.10 1.10 6.09 -51.93 -0.32 0.79 16 11 C 0.52 7.55 7.05 -10.98 -0.08 7.47 16 12 O -0.55 -9.53 14.66 5.55 0.08 -9.45 16 13 N -0.60 -8.58 2.93 -172.52 -0.51 -9.09 16 14 C 0.10 1.31 4.87 -3.49 -0.02 1.30 16 15 C -0.12 -1.98 5.21 -26.38 -0.14 -2.12 16 16 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 17 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 18 C -0.52 -13.80 8.39 -34.44 -0.29 -14.09 16 19 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 22 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.13 -2.15 5.36 -26.63 -0.14 -2.30 16 27 C 0.11 1.66 6.43 -3.73 -0.02 1.64 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.49 7.42 -51.93 -0.39 0.10 16 31 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.05 0.61 6.57 -51.93 -0.34 0.27 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.33 2.61 8.06 -39.29 -0.32 2.29 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.79 6.21 -51.93 -0.32 0.47 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 41 H 0.08 0.86 5.03 -51.93 -0.26 0.60 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.49 6.91 -51.93 -0.36 1.13 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 51 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -30.30 380.18 -10.03 -40.33 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -9.27 Total: 2.09 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.08 Total: -12.96 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.47 Total: -41.72 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.30 -10.03 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581133308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.278 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds