Wall clock time and date at job start Fri Apr 10 2020 22:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47151 * 2 1 4 4 C 1.53004 * 109.47075 * 240.00125 * 2 1 3 5 5 C 1.52999 * 109.47320 * 119.99961 * 2 1 3 6 6 H 1.09007 * 109.48928 * 288.08925 * 5 2 1 7 7 O 1.42897 * 109.48346 * 168.05997 * 5 2 1 8 8 C 1.42905 * 114.10298 * 178.85694 * 7 5 2 9 9 C 1.53097 * 109.40926 * 61.15554 * 8 7 5 10 10 C 1.53175 * 109.16563 * 302.39579 * 9 8 7 11 11 C 1.53089 * 109.47977 * 48.11427 * 5 2 1 12 12 H 1.08996 * 109.52262 * 297.56197 * 11 5 2 13 13 C 1.52995 * 109.52174 * 57.68761 * 11 5 2 14 14 N 1.46907 * 109.47028 * 173.23915 * 13 11 5 15 15 C 1.46903 * 110.99907 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.47046 * 54.99997 * 16 15 14 18 18 C 1.47207 * 109.46865 * 295.00118 * 16 15 14 19 19 N 7.77704 * 92.31862 * 170.06350 * 2 1 3 20 20 C 1.53000 * 109.46950 * 175.00105 * 16 15 14 21 21 C 1.50701 * 109.46608 * 184.99888 * 20 16 15 22 22 H 1.08001 * 120.00536 * 0.02562 * 21 20 16 23 23 C 1.37880 * 119.99709 * 179.97438 * 21 20 16 24 24 N 1.31512 * 120.00173 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00163 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47029 * 89.99654 * 25 23 21 27 27 H 1.48490 * 109.47303 * 210.00090 * 25 23 21 28 28 H 1.48501 * 109.46725 * 330.00339 * 25 23 21 29 29 H 1.09004 * 109.47424 * 299.99962 * 1 2 3 30 30 H 1.08996 * 109.47219 * 60.00324 * 1 2 3 31 31 H 1.08995 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47286 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47034 * 299.99773 * 3 2 1 34 34 H 1.09001 * 109.47378 * 59.99506 * 3 2 1 35 35 H 1.08997 * 109.47305 * 341.91566 * 4 2 1 36 36 H 1.08999 * 109.47060 * 101.92496 * 4 2 1 37 37 H 1.09003 * 109.46839 * 221.91957 * 4 2 1 38 38 H 1.08991 * 109.48330 * 181.13932 * 8 7 5 39 39 H 1.09002 * 109.47876 * 301.17911 * 8 7 5 40 40 H 1.08999 * 109.52366 * 62.30136 * 9 8 7 41 41 H 1.09000 * 109.51752 * 182.48500 * 9 8 7 42 42 H 1.09007 * 109.53917 * 297.11326 * 10 9 8 43 43 H 1.08997 * 109.54686 * 176.85182 * 10 9 8 44 44 H 1.09001 * 109.47649 * 293.23771 * 13 11 5 45 45 H 1.09000 * 109.47241 * 53.23853 * 13 11 5 46 46 H 1.00899 * 111.00120 * 303.95060 * 14 13 11 47 47 H 1.09001 * 109.47414 * 300.00205 * 15 14 13 48 48 H 1.09003 * 109.46978 * 59.99680 * 15 14 13 49 49 H 1.08999 * 109.47095 * 304.99472 * 20 16 15 50 50 H 1.08997 * 109.47299 * 65.00510 * 20 16 15 51 51 H 0.96997 * 120.00059 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.8604 -0.0999 2.1267 7 8 3.4415 -0.9676 1.1185 8 6 4.0276 -1.6178 2.2480 9 6 3.3691 -2.9857 2.4459 10 6 1.8597 -2.7960 2.6248 11 6 1.3017 -2.0530 1.4070 12 1 0.2377 -1.8649 1.5500 13 6 1.5065 -2.9030 0.1515 14 7 0.9364 -4.2397 0.3667 15 6 1.1155 -5.0859 -0.8207 16 6 0.5101 -6.4664 -0.5592 17 1 -0.5316 -6.3552 -0.2579 18 6 1.2624 -7.1369 0.5139 19 7 1.8446 -7.6541 1.3409 20 6 0.5848 -7.3062 -1.8360 21 6 -0.1204 -8.6196 -1.6152 22 1 -0.5767 -8.8337 -0.6601 23 6 -0.1841 -9.5474 -2.6331 24 7 0.3710 -9.2865 -3.7965 25 14 -1.0589 -11.1752 -2.3599 26 1 -2.4899 -11.0366 -2.7318 27 1 -0.4279 -12.2235 -3.2012 28 1 -0.9543 -11.5592 -0.9292 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.2401 -1.3316 -1.6685 36 1 2.3613 0.0137 -1.9874 37 1 2.8820 -1.3597 -0.9819 38 1 5.0959 -1.7499 2.0776 39 1 3.8740 -1.0082 3.1385 40 1 3.5567 -3.6101 1.5725 41 1 3.7837 -3.4646 3.3330 42 1 1.6697 -2.2132 3.5261 43 1 1.3774 -3.7698 2.7103 44 1 1.0092 -2.4278 -0.6942 45 1 2.5727 -2.9920 -0.0572 46 1 1.3356 -4.6757 1.1845 47 1 0.6159 -4.6260 -1.6733 48 1 2.1791 -5.1899 -1.0356 49 1 0.1040 -6.7685 -2.6532 50 1 1.6288 -7.4923 -2.0879 51 1 0.3259 -9.9391 -4.5126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583049163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:09 Heat of formation + Delta-G solvation = -40.219000 kcal Electronic energy + Delta-G solvation = -26879.634823 eV Core-core repulsion = 23392.292921 eV Total energy + Delta-G solvation = -3487.341901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78846 -37.38045 -36.63467 -35.52962 -33.99400 -33.03819 -31.50977 -30.33627 -28.03052 -27.52349 -26.73328 -25.18644 -24.73210 -22.91819 -22.36032 -21.74977 -19.41781 -18.96437 -16.80196 -16.69522 -16.47952 -16.26950 -15.87317 -15.53803 -14.91527 -14.62345 -14.03029 -13.92806 -13.80139 -13.74268 -13.29848 -13.20100 -13.02578 -12.80688 -12.53320 -12.42222 -12.19029 -12.08296 -12.02370 -11.80729 -11.69011 -11.40402 -11.27680 -11.19551 -11.09332 -11.00775 -10.81628 -10.70686 -10.63401 -10.52593 -10.41864 -10.22111 -10.06108 -9.57868 -9.41620 -9.20194 -8.44899 -8.21377 -6.08871 -4.11947 3.29580 3.36347 3.40891 3.53622 3.57742 3.62851 4.27740 4.38420 4.43236 4.56907 4.70074 4.73329 4.80996 4.82895 4.88324 4.98544 5.05327 5.19721 5.28992 5.30292 5.37738 5.40014 5.46391 5.53213 5.56659 5.60074 5.62523 5.66416 5.69638 5.78182 5.80431 5.84289 5.87304 5.94377 5.98818 6.04482 6.16991 6.18520 6.21715 6.27968 6.37663 6.41261 6.56578 7.09155 7.19376 7.44483 7.50384 7.54829 7.86211 8.24059 8.40590 8.92617 9.53414 11.02014 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.003016 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.693953 B = 9281.918549 C =10009.536596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.152 4.152 5 C 0.106 3.894 6 H 0.056 0.944 7 O -0.372 6.372 8 C 0.064 3.936 9 C -0.160 4.160 10 C -0.122 4.122 11 C -0.115 4.115 12 H 0.090 0.910 13 C 0.049 3.951 14 N -0.695 5.695 15 C 0.068 3.932 16 C 0.006 3.994 17 H 0.110 0.890 18 C 0.242 3.758 19 N -0.478 5.478 20 C 0.033 3.967 21 C -0.526 4.526 22 H 0.056 0.944 23 C 0.062 3.938 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.039 0.961 46 H 0.334 0.666 47 H 0.090 0.910 48 H 0.033 0.967 49 H 0.040 0.960 50 H 0.024 0.976 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 22.686 8.684 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 C -0.196 4.196 4 C -0.209 4.209 5 C 0.048 3.952 6 H 0.073 0.927 7 O -0.291 6.291 8 C -0.013 4.013 9 C -0.198 4.198 10 C -0.160 4.160 11 C -0.134 4.134 12 H 0.108 0.892 13 C -0.079 4.079 14 N -0.327 5.327 15 C -0.062 4.062 16 C -0.016 4.016 17 H 0.128 0.872 18 C -0.075 4.075 19 N -0.155 5.155 20 C -0.006 4.006 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.530 5.530 25 Si 0.719 3.281 26 H -0.204 1.204 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.154 0.846 47 H 0.108 0.892 48 H 0.051 0.949 49 H 0.058 0.942 50 H 0.042 0.958 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.425 22.073 9.420 24.242 hybrid contribution 0.149 -1.209 0.141 1.226 sum 3.574 20.864 9.561 23.227 Atomic orbital electron populations 1.22078 0.93678 1.02964 1.01837 1.20525 0.95457 0.95314 0.94546 1.21902 1.01588 0.94798 1.01287 1.22329 1.02001 1.00539 0.96012 1.22110 0.81323 0.94391 0.97396 0.92655 1.87898 1.21837 1.78825 1.40573 1.22514 0.97545 0.92193 0.89042 1.22226 0.96466 0.98301 1.02765 1.21656 0.95192 1.01487 0.97652 1.21836 1.01027 0.95092 0.95461 0.89164 1.22618 0.98075 0.89328 0.97920 1.60730 1.62539 1.03432 1.06010 1.22046 0.99030 0.91797 0.93336 1.19347 0.97754 0.92081 0.92405 0.87198 1.29350 0.92768 0.92401 0.92947 1.81024 1.11201 1.10189 1.13116 1.19159 0.98424 0.93910 0.89111 1.21150 1.35708 1.00890 0.98672 0.92535 1.24954 0.95415 0.98486 0.95125 1.69936 1.44207 1.35681 1.03192 0.86596 0.79794 0.83468 0.78257 1.20425 1.21172 1.19904 0.92812 0.92146 0.91088 0.92110 0.92627 0.93164 0.91766 0.93148 0.90580 0.89146 0.93538 0.91075 0.91076 0.91982 0.90698 0.88880 0.94338 0.84646 0.89169 0.94919 0.94207 0.95791 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 7.45 37.15 0.28 -0.88 16 2 C -0.06 -0.50 0.62 -154.51 -0.10 -0.59 16 3 C -0.14 -1.09 8.13 37.16 0.30 -0.79 16 4 C -0.15 -1.43 7.48 37.16 0.28 -1.15 16 5 C 0.11 0.98 1.86 -26.69 -0.05 0.93 16 6 H 0.06 0.49 8.09 -51.92 -0.42 0.07 16 7 O -0.37 -3.87 8.11 -35.23 -0.29 -4.15 16 8 C 0.06 0.58 6.84 37.21 0.25 0.83 16 9 C -0.16 -1.57 5.78 -26.59 -0.15 -1.73 16 10 C -0.12 -1.21 5.12 -26.55 -0.14 -1.34 16 11 C -0.12 -1.13 1.94 -90.49 -0.18 -1.30 16 12 H 0.09 0.88 6.48 -51.93 -0.34 0.54 16 13 C 0.05 0.55 3.07 -3.82 -0.01 0.54 16 14 N -0.69 -9.21 6.40 -113.77 -0.73 -9.94 16 15 C 0.07 1.02 5.12 -3.82 -0.02 1.00 16 16 C 0.01 0.11 2.42 -93.40 -0.23 -0.11 16 17 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 18 C 0.24 4.93 12.98 -20.76 -0.27 4.66 16 19 N -0.48 -10.45 18.54 42.15 0.78 -9.67 16 20 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 21 C -0.53 -14.08 8.60 -34.44 -0.30 -14.38 16 22 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 25 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.60 5.45 -51.93 -0.28 0.32 16 32 H 0.06 0.52 8.04 -51.93 -0.42 0.11 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.60 5.62 -51.93 -0.29 0.31 16 36 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 37 H 0.08 0.82 4.98 -51.93 -0.26 0.56 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.83 6.78 -51.93 -0.35 0.47 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.07 0.83 6.34 -51.93 -0.33 0.50 16 44 H 0.09 1.02 3.73 -51.93 -0.19 0.82 16 45 H 0.04 0.48 5.27 -51.93 -0.27 0.21 16 46 H 0.33 4.66 5.59 -39.29 -0.22 4.44 16 47 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -29.19 380.26 -8.13 -37.33 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.80 Total: 1.25 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.54 Total: -12.05 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.79 Total: -44.50 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.29 Total: -4.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.19 -8.13 -37.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583049163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.893 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds