Wall clock time and date at job start Fri Apr 10 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47151 * 2 1 4 4 C 1.53004 * 109.47075 * 240.00125 * 2 1 3 5 5 C 1.52999 * 109.47320 * 119.99961 * 2 1 3 6 6 H 1.09007 * 109.48928 * 288.08925 * 5 2 1 7 7 O 1.42897 * 109.48346 * 168.05997 * 5 2 1 8 8 C 1.42905 * 114.10298 * 178.85694 * 7 5 2 9 9 C 1.53097 * 109.40926 * 61.15554 * 8 7 5 10 10 C 1.53175 * 109.16563 * 302.39579 * 9 8 7 11 11 C 1.53089 * 109.47977 * 48.11427 * 5 2 1 12 12 H 1.08996 * 109.52262 * 297.56197 * 11 5 2 13 13 C 1.52995 * 109.52174 * 57.68761 * 11 5 2 14 14 N 1.46907 * 109.47028 * 173.23915 * 13 11 5 15 15 C 1.46903 * 110.99907 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.47046 * 54.99997 * 16 15 14 18 18 C 1.47207 * 109.46865 * 295.00118 * 16 15 14 19 19 N 7.77704 * 92.31862 * 170.06350 * 2 1 3 20 20 C 1.53000 * 109.46950 * 175.00105 * 16 15 14 21 21 C 1.50701 * 109.46608 * 184.99888 * 20 16 15 22 22 H 1.08001 * 120.00536 * 0.02562 * 21 20 16 23 23 C 1.37880 * 119.99709 * 179.97438 * 21 20 16 24 24 N 1.31512 * 120.00173 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00163 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47029 * 89.99654 * 25 23 21 27 27 H 1.48490 * 109.47303 * 210.00090 * 25 23 21 28 28 H 1.48501 * 109.46725 * 330.00339 * 25 23 21 29 29 H 1.09004 * 109.47424 * 299.99962 * 1 2 3 30 30 H 1.08996 * 109.47219 * 60.00324 * 1 2 3 31 31 H 1.08995 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47286 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47034 * 299.99773 * 3 2 1 34 34 H 1.09001 * 109.47378 * 59.99506 * 3 2 1 35 35 H 1.08997 * 109.47305 * 341.91566 * 4 2 1 36 36 H 1.08999 * 109.47060 * 101.92496 * 4 2 1 37 37 H 1.09003 * 109.46839 * 221.91957 * 4 2 1 38 38 H 1.08991 * 109.48330 * 181.13932 * 8 7 5 39 39 H 1.09002 * 109.47876 * 301.17911 * 8 7 5 40 40 H 1.08999 * 109.52366 * 62.30136 * 9 8 7 41 41 H 1.09000 * 109.51752 * 182.48500 * 9 8 7 42 42 H 1.09007 * 109.53917 * 297.11326 * 10 9 8 43 43 H 1.08997 * 109.54686 * 176.85182 * 10 9 8 44 44 H 1.09001 * 109.47649 * 293.23771 * 13 11 5 45 45 H 1.09000 * 109.47241 * 53.23853 * 13 11 5 46 46 H 1.00899 * 111.00120 * 303.95060 * 14 13 11 47 47 H 1.09001 * 109.47414 * 300.00205 * 15 14 13 48 48 H 1.09003 * 109.46978 * 59.99680 * 15 14 13 49 49 H 1.08999 * 109.47095 * 304.99472 * 20 16 15 50 50 H 1.08997 * 109.47299 * 65.00510 * 20 16 15 51 51 H 0.96997 * 120.00059 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.8604 -0.0999 2.1267 7 8 3.4415 -0.9676 1.1185 8 6 4.0276 -1.6178 2.2480 9 6 3.3691 -2.9857 2.4459 10 6 1.8597 -2.7960 2.6248 11 6 1.3017 -2.0530 1.4070 12 1 0.2377 -1.8649 1.5500 13 6 1.5065 -2.9030 0.1515 14 7 0.9364 -4.2397 0.3667 15 6 1.1155 -5.0859 -0.8207 16 6 0.5101 -6.4664 -0.5592 17 1 -0.5316 -6.3552 -0.2579 18 6 1.2624 -7.1369 0.5139 19 7 1.8446 -7.6541 1.3409 20 6 0.5848 -7.3062 -1.8360 21 6 -0.1204 -8.6196 -1.6152 22 1 -0.5767 -8.8337 -0.6601 23 6 -0.1841 -9.5474 -2.6331 24 7 0.3710 -9.2865 -3.7965 25 14 -1.0589 -11.1752 -2.3599 26 1 -2.4899 -11.0366 -2.7318 27 1 -0.4279 -12.2235 -3.2012 28 1 -0.9543 -11.5592 -0.9292 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.2401 -1.3316 -1.6685 36 1 2.3613 0.0137 -1.9874 37 1 2.8820 -1.3597 -0.9819 38 1 5.0959 -1.7499 2.0776 39 1 3.8740 -1.0082 3.1385 40 1 3.5567 -3.6101 1.5725 41 1 3.7837 -3.4646 3.3330 42 1 1.6697 -2.2132 3.5261 43 1 1.3774 -3.7698 2.7103 44 1 1.0092 -2.4278 -0.6942 45 1 2.5727 -2.9920 -0.0572 46 1 1.3356 -4.6757 1.1845 47 1 0.6159 -4.6260 -1.6733 48 1 2.1791 -5.1899 -1.0356 49 1 0.1040 -6.7685 -2.6532 50 1 1.6288 -7.4923 -2.0879 51 1 0.3259 -9.9391 -4.5126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583049163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:08 Heat of formation + Delta-G solvation = -56.339858 kcal Electronic energy + Delta-G solvation = -26880.333876 eV Core-core repulsion = 23392.292921 eV Total energy + Delta-G solvation = -3488.040954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55913 -38.82610 -37.33903 -36.77058 -35.61399 -34.48993 -32.91405 -31.30668 -28.97843 -28.20737 -28.10660 -26.05995 -25.78548 -24.08915 -23.55323 -23.32986 -20.18281 -19.72648 -18.54037 -18.27008 -17.42732 -17.15325 -16.86277 -16.68162 -16.29978 -15.80984 -15.20238 -14.87073 -14.73878 -14.58380 -14.48260 -14.39245 -14.25653 -14.00561 -13.78216 -13.70485 -13.41699 -13.17246 -13.06391 -12.94709 -12.79725 -12.61920 -12.52006 -12.48003 -12.32814 -12.16348 -12.04752 -11.93701 -11.83377 -11.50869 -11.39491 -11.34807 -11.19137 -11.13591 -10.79871 -10.55325 -10.20153 -9.32323 -8.19816 -6.28255 1.40039 1.41545 1.50851 1.92104 1.94105 2.41060 2.83096 3.15021 3.22943 3.24225 3.65637 3.82638 3.92276 3.97617 4.11352 4.13875 4.17058 4.24986 4.30155 4.41225 4.46659 4.54165 4.63922 4.69652 4.73732 4.77413 4.84983 4.88038 4.89140 4.91598 4.95784 4.98428 5.00854 5.09197 5.12145 5.17172 5.21612 5.27024 5.32012 5.38276 5.46426 5.49562 5.59938 5.61977 5.63372 5.78711 6.05483 6.21303 6.36666 6.38956 6.73304 6.86466 7.40318 8.91145 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.003016 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.693953 B = 9281.918549 C =10009.536596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.135 4.135 4 C -0.151 4.151 5 C 0.107 3.893 6 H 0.065 0.935 7 O -0.386 6.386 8 C 0.063 3.937 9 C -0.158 4.158 10 C -0.122 4.122 11 C -0.110 4.110 12 H 0.096 0.904 13 C 0.054 3.946 14 N -0.690 5.690 15 C 0.079 3.921 16 C 0.019 3.981 17 H 0.124 0.876 18 C 0.250 3.750 19 N -0.504 5.504 20 C 0.039 3.961 21 C -0.539 4.539 22 H 0.054 0.946 23 C 0.011 3.989 24 N -0.923 5.923 25 Si 0.950 3.050 26 H -0.266 1.266 27 H -0.284 1.284 28 H -0.276 1.276 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.026 0.974 46 H 0.330 0.670 47 H 0.104 0.896 48 H 0.025 0.975 49 H 0.037 0.963 50 H -0.002 1.002 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 23.976 9.525 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 C -0.193 4.193 4 C -0.207 4.207 5 C 0.049 3.951 6 H 0.083 0.917 7 O -0.306 6.306 8 C -0.014 4.014 9 C -0.195 4.195 10 C -0.160 4.160 11 C -0.129 4.129 12 H 0.114 0.886 13 C -0.074 4.074 14 N -0.322 5.322 15 C -0.052 4.052 16 C -0.003 4.003 17 H 0.142 0.858 18 C -0.066 4.066 19 N -0.181 5.181 20 C 0.000 4.000 21 C -0.577 4.577 22 H 0.072 0.928 23 C -0.188 4.188 24 N -0.563 5.563 25 Si 0.775 3.225 26 H -0.191 1.191 27 H -0.210 1.210 28 H -0.201 1.201 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.044 0.956 46 H 0.149 0.851 47 H 0.123 0.877 48 H 0.043 0.957 49 H 0.055 0.945 50 H 0.017 0.983 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.461 23.375 10.270 25.650 hybrid contribution 0.481 -1.591 -0.119 1.667 sum 2.942 21.784 10.151 24.213 Atomic orbital electron populations 1.22047 0.92866 1.02716 1.02627 1.20545 0.96034 0.95532 0.93692 1.21867 1.00911 0.94402 1.02071 1.22295 1.01348 1.00445 0.96653 1.22161 0.80763 0.94019 0.98111 0.91673 1.87893 1.22454 1.78910 1.41318 1.22590 0.97733 0.91715 0.89317 1.22194 0.96764 0.98606 1.01979 1.21653 0.94948 1.00988 0.98361 1.21804 1.01468 0.95129 0.94466 0.88604 1.22638 0.97225 0.88386 0.99170 1.60748 1.62598 1.03878 1.04992 1.21895 0.98421 0.90288 0.94583 1.19247 0.98642 0.92847 0.89579 0.85832 1.29684 0.92246 0.91820 0.92805 1.81020 1.12123 1.10938 1.14047 1.18979 0.96243 0.93513 0.91248 1.21548 1.35478 1.02315 0.98400 0.92794 1.25724 0.96274 1.01744 0.95053 1.70033 1.45515 1.36835 1.03935 0.85678 0.79321 0.79660 0.77818 1.19076 1.21001 1.20113 0.91822 0.91614 0.91806 0.93118 0.91988 0.92265 0.91846 0.92838 0.92206 0.88594 0.92021 0.93333 0.90490 0.90486 0.92110 0.88258 0.95562 0.85066 0.87744 0.95667 0.94515 0.98335 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 7.45 71.98 0.54 -1.41 16 2 C -0.06 -0.89 0.62 -52.18 -0.03 -0.92 16 3 C -0.14 -1.87 8.13 71.98 0.58 -1.29 16 4 C -0.15 -2.68 7.48 71.98 0.54 -2.14 16 5 C 0.11 1.79 1.86 30.62 0.06 1.85 16 6 H 0.07 0.99 8.09 -2.38 -0.02 0.97 16 7 O -0.39 -7.59 8.11 -148.98 -1.21 -8.80 16 8 C 0.06 1.06 6.84 72.01 0.49 1.55 16 9 C -0.16 -3.00 5.78 30.69 0.18 -2.82 16 10 C -0.12 -2.26 5.12 30.71 0.16 -2.10 16 11 C -0.11 -1.99 1.94 -10.71 -0.02 -2.01 16 12 H 0.10 1.66 6.48 -2.39 -0.02 1.65 16 13 C 0.05 1.16 3.07 86.30 0.27 1.43 16 14 N -0.69 -17.70 6.40 -513.86 -3.29 -20.99 16 15 C 0.08 2.31 5.12 86.30 0.44 2.76 16 16 C 0.02 0.68 2.42 -12.60 -0.03 0.65 16 17 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 18 C 0.25 10.17 12.98 89.44 1.16 11.33 16 19 N -0.50 -22.00 18.54 20.01 0.37 -21.63 16 20 C 0.04 1.82 4.42 29.85 0.13 1.96 16 21 C -0.54 -28.84 8.60 25.60 0.22 -28.62 16 22 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 23 C 0.01 0.61 5.46 84.66 0.46 1.07 16 24 N -0.92 -53.37 13.29 21.45 0.28 -53.09 16 25 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.95 5.45 -2.39 -0.01 0.94 16 32 H 0.05 0.81 8.04 -2.39 -0.02 0.79 16 33 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 1.11 5.62 -2.39 -0.01 1.10 16 36 H 0.05 0.90 7.68 -2.39 -0.02 0.88 16 37 H 0.06 1.27 4.98 -2.39 -0.01 1.26 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 1.14 6.78 -2.39 -0.02 1.12 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.06 1.31 6.34 -2.39 -0.02 1.29 16 44 H 0.10 2.05 3.73 -2.39 -0.01 2.04 16 45 H 0.03 0.65 5.27 -2.39 -0.01 0.64 16 46 H 0.33 9.06 5.59 -89.69 -0.50 8.56 16 47 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 51 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -61.44 380.26 3.74 -57.70 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.41 Total: 19.79 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 5.14 Total: -18.71 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -2.63 Total: -95.70 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.21 Total: -8.80 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -61.44 3.74 -57.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583049163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.358 kcal (2) G-P(sol) polarization free energy of solvation -61.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds