Wall clock time and date at job start Fri Apr 10 2020 22:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.50706 * 120.00302 * 180.02562 * 2 1 3 5 5 N 1.46896 * 109.47236 * 94.99815 * 4 2 1 6 6 C 1.46843 * 111.00151 * 45.79136 * 5 4 2 7 7 C 1.53035 * 109.52159 * 185.83656 * 6 5 4 8 8 C 1.53116 * 109.28054 * 300.82027 * 7 6 5 9 9 N 1.46508 * 109.57505 * 177.58805 * 8 7 6 10 10 C 1.34781 * 119.99508 * 85.28828 * 9 8 7 11 11 O 1.21279 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99714 * 179.97438 * 10 9 8 13 13 C 1.52995 * 109.47059 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47604 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47294 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99869 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99881 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47086 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47521 * 119.99406 * 20 18 16 23 23 H 1.48496 * 109.47183 * 239.99689 * 20 18 16 24 24 C 1.53120 * 109.15934 * 57.65931 * 8 7 6 25 25 C 1.46855 * 110.99753 * 170.00337 * 5 4 2 26 26 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 28 28 H 1.09000 * 109.46981 * 90.00103 * 3 2 1 29 29 H 1.09000 * 109.47455 * 209.99919 * 3 2 1 30 30 H 1.09006 * 109.47016 * 330.00177 * 3 2 1 31 31 H 1.08996 * 109.46892 * 215.00324 * 4 2 1 32 32 H 1.09001 * 109.46811 * 334.99425 * 4 2 1 33 33 H 1.08997 * 109.46294 * 305.85181 * 6 5 4 34 34 H 1.09000 * 109.45877 * 65.82513 * 6 5 4 35 35 H 1.09004 * 109.50579 * 180.87705 * 7 6 5 36 36 H 1.09002 * 109.50609 * 60.76664 * 7 6 5 37 37 H 1.09000 * 109.52757 * 297.74850 * 8 7 6 38 38 H 0.96995 * 120.00363 * 265.28722 * 9 8 7 39 39 H 1.09003 * 109.46914 * 300.00271 * 12 10 9 40 40 H 1.09001 * 109.47039 * 60.00288 * 12 10 9 41 41 H 1.09003 * 109.47326 * 300.00474 * 13 12 10 42 42 H 1.09008 * 109.47242 * 60.00202 * 13 12 10 43 43 H 1.09003 * 109.46537 * 300.00398 * 14 13 12 44 44 H 1.09003 * 109.47165 * 59.99400 * 14 13 12 45 45 H 1.09003 * 109.46959 * 300.00121 * 15 14 13 46 46 H 1.08996 * 109.47277 * 59.99422 * 15 14 13 47 47 H 0.97004 * 119.99490 * 180.02562 * 19 18 16 48 48 H 1.09004 * 109.50229 * 182.40594 * 24 8 7 49 49 H 1.08998 * 109.50834 * 62.28426 * 24 8 7 50 50 H 1.09002 * 109.46060 * 294.17622 * 25 5 4 51 51 H 1.09006 * 109.45942 * 54.15282 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3804 6 6 2.9592 -0.5144 -2.1060 7 6 3.1749 -0.8889 -3.5741 8 6 4.1428 -2.0724 -3.6570 9 7 4.3092 -2.4734 -5.0563 10 6 5.2186 -1.8506 -5.8320 11 8 5.8993 -0.9587 -5.3716 12 6 5.3902 -2.2633 -7.2712 13 6 6.4767 -1.4049 -7.9218 14 6 6.6506 -1.8234 -9.3831 15 6 7.7376 -0.9654 -10.0336 16 6 7.9084 -1.3773 -11.4731 17 1 7.3025 -2.1719 -11.8829 18 6 8.8388 -0.7404 -12.2666 19 7 9.5770 0.2268 -11.7674 20 14 9.0510 -1.2514 -14.0507 21 1 8.1085 -2.3551 -14.3650 22 1 8.7686 -0.0920 -14.9347 23 1 10.4449 -1.7137 -14.2708 24 6 3.5731 -3.2447 -2.8533 25 6 3.3460 -2.8020 -1.4060 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0045 28 1 2.2452 1.6197 1.0277 29 1 3.0159 1.1748 -0.5138 30 1 1.4744 2.0648 -0.5138 31 1 2.9742 -1.1991 0.5889 32 1 1.4386 -2.0856 0.4335 33 1 2.2594 0.3189 -2.0428 34 1 3.9111 -0.2236 -1.6617 35 1 3.5950 -0.0371 -4.1090 36 1 2.2211 -1.1666 -4.0228 37 1 5.1089 -1.7827 -3.2437 38 1 3.7650 -3.1869 -5.4244 39 1 5.6805 -3.3130 -7.3160 40 1 4.4496 -2.1234 -7.8040 41 1 6.1860 -0.3553 -7.8770 42 1 7.4175 -1.5444 -7.3892 43 1 6.9411 -2.8730 -9.4282 44 1 5.7098 -1.6837 -9.9155 45 1 7.4475 0.0843 -9.9883 46 1 8.6782 -1.1056 -9.5011 47 1 10.2313 0.6751 -12.3258 48 1 4.2778 -4.0761 -2.8731 49 1 2.6256 -3.5595 -3.2905 50 1 4.2961 -2.5004 -0.9650 51 1 2.9269 -3.6302 -0.8345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588350116.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:18 Heat of formation + Delta-G solvation = -47.001820 kcal Electronic energy + Delta-G solvation = -24943.069030 eV Core-core repulsion = 21455.433003 eV Total energy + Delta-G solvation = -3487.636026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28682 -39.11549 -36.55034 -34.88170 -34.33858 -32.62453 -31.58594 -31.16753 -29.57470 -27.91026 -26.56938 -25.40187 -23.56811 -23.21683 -21.97627 -20.47594 -20.01111 -19.83047 -18.85709 -17.04453 -16.59529 -16.13306 -15.78924 -15.65470 -15.48417 -15.36926 -14.61800 -14.43293 -14.31019 -14.07724 -13.81466 -13.61072 -13.46846 -13.16618 -12.59848 -12.49523 -12.23503 -12.15877 -12.12515 -11.69053 -11.60795 -11.57380 -11.52085 -11.37676 -10.99366 -10.95153 -10.80091 -10.50571 -10.46477 -10.38199 -9.74435 -9.58611 -9.57416 -9.19067 -9.09745 -8.94510 -8.67632 -8.28945 -5.93579 -3.95912 1.77652 2.77257 3.13376 3.34324 3.41432 3.45515 3.59286 4.27072 4.38749 4.50013 4.50658 4.58669 4.70229 4.87419 4.91931 4.99171 5.00448 5.11437 5.16236 5.20955 5.27998 5.32031 5.35413 5.38930 5.40867 5.42623 5.47494 5.50090 5.58007 5.61051 5.72359 5.82686 5.91363 6.03767 6.17540 6.18787 6.34024 6.42058 6.45077 6.58659 6.63978 6.69679 6.87421 7.05490 7.23056 7.50085 7.76635 7.92627 8.08222 8.32316 8.50137 9.12107 9.67674 11.17766 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.034266 B = 0.001800 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.952289 B =15550.630897 C =15950.550614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.131 4.131 3 C -0.129 4.129 4 C 0.090 3.910 5 N -0.533 5.533 6 C 0.053 3.947 7 C -0.128 4.128 8 C 0.144 3.856 9 N -0.734 5.734 10 C 0.512 3.488 11 O -0.536 6.536 12 C -0.139 4.139 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.122 4.122 25 C 0.058 3.942 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.037 0.963 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.174 -5.730 26.676 33.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.131 4.131 3 C -0.186 4.186 4 C -0.037 4.037 5 N -0.258 5.258 6 C -0.074 4.074 7 C -0.167 4.167 8 C 0.039 3.961 9 N -0.387 5.387 10 C 0.300 3.700 11 O -0.412 6.412 12 C -0.179 4.179 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.161 4.161 25 C -0.070 4.070 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.055 0.945 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.932 -5.108 26.715 33.139 hybrid contribution 0.605 -0.322 -0.756 1.020 sum -18.327 -5.430 25.959 32.237 Atomic orbital electron populations 1.23714 0.95111 1.01955 1.00418 1.21601 0.95569 0.95100 1.00879 1.21124 1.00616 0.94630 1.02209 1.21141 0.98510 0.94752 0.89336 1.62143 1.43117 1.06945 1.13551 1.22310 0.98232 0.93310 0.93597 1.22007 0.99932 0.98773 0.95941 1.20948 0.99305 0.94248 0.81635 1.46162 1.41032 1.39925 1.11547 1.21110 0.78566 0.81535 0.88783 1.90696 1.45325 1.30158 1.75020 1.21796 1.02535 1.02396 0.91169 1.21443 0.96926 0.98967 0.96751 1.21649 1.00487 1.00068 0.92595 1.19104 0.93045 0.94873 0.94787 1.21329 1.19755 1.18505 0.96167 0.92693 1.25049 0.95942 0.95160 0.98492 1.69991 1.23569 1.23847 1.36061 0.86554 0.77853 0.78421 0.85260 1.19786 1.21063 1.21072 1.21851 1.01840 0.97498 0.94877 1.22039 0.94375 0.93964 0.96619 0.88468 0.88229 0.91587 0.91369 0.91577 0.94193 0.90128 0.89465 0.94647 0.90788 0.90916 0.89890 0.76698 0.89208 0.89185 0.91857 0.91868 0.93505 0.93487 0.96590 0.96592 0.93125 0.90734 0.90408 0.94503 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 13.89 29.02 0.40 -0.69 16 2 C -0.13 -0.88 4.38 -101.06 -0.44 -1.32 16 3 C -0.13 -0.79 8.88 36.01 0.32 -0.47 16 4 C 0.09 0.60 5.46 -4.98 -0.03 0.58 16 5 N -0.53 -4.09 4.80 -236.11 -1.13 -5.23 16 6 C 0.05 0.46 4.00 -3.84 -0.02 0.44 16 7 C -0.13 -1.24 5.68 -26.65 -0.15 -1.39 16 8 C 0.14 1.39 2.52 -67.80 -0.17 1.21 16 9 N -0.73 -7.39 5.08 -53.68 -0.27 -7.67 16 10 C 0.51 7.16 7.80 -10.98 -0.09 7.07 16 11 O -0.54 -9.79 15.64 5.56 0.09 -9.70 16 12 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 13 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 14 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 15 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.12 -0.86 5.57 -26.65 -0.15 -1.01 16 25 C 0.06 0.40 5.42 -3.83 -0.02 0.38 16 26 H 0.10 0.54 8.04 -52.49 -0.42 0.12 16 27 H 0.10 0.59 7.99 -52.48 -0.42 0.17 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.45 5.78 -51.93 -0.30 0.15 16 30 H 0.07 0.38 8.06 -51.93 -0.42 -0.04 16 31 H 0.04 0.26 8.08 -51.93 -0.42 -0.15 16 32 H 0.08 0.49 7.99 -51.93 -0.41 0.07 16 33 H 0.09 0.74 5.32 -51.93 -0.28 0.46 16 34 H 0.04 0.32 7.54 -51.93 -0.39 -0.07 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.00 7.58 -51.93 -0.39 0.60 16 38 H 0.40 2.89 8.61 -40.82 -0.35 2.54 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.06 1.23 8.10 -51.92 -0.42 0.81 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 51 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -33.67 401.22 -10.55 -44.22 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -9.68 Total: -2.50 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.31 Total: -15.22 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.67 Total: -39.89 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.67 -10.55 -44.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588350116.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.782 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds