Wall clock time and date at job start Fri Apr 10 2020 22:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.50706 * 120.00302 * 180.02562 * 2 1 3 5 5 N 1.46896 * 109.47236 * 94.99815 * 4 2 1 6 6 C 1.46843 * 111.00151 * 45.79136 * 5 4 2 7 7 C 1.53035 * 109.52159 * 185.83656 * 6 5 4 8 8 C 1.53116 * 109.28054 * 300.82027 * 7 6 5 9 9 N 1.46508 * 109.57505 * 177.58805 * 8 7 6 10 10 C 1.34781 * 119.99508 * 85.28828 * 9 8 7 11 11 O 1.21279 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99714 * 179.97438 * 10 9 8 13 13 C 1.52995 * 109.47059 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47604 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47294 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99869 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99881 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47086 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47521 * 119.99406 * 20 18 16 23 23 H 1.48496 * 109.47183 * 239.99689 * 20 18 16 24 24 C 1.53120 * 109.15934 * 57.65931 * 8 7 6 25 25 C 1.46855 * 110.99753 * 170.00337 * 5 4 2 26 26 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 28 28 H 1.09000 * 109.46981 * 90.00103 * 3 2 1 29 29 H 1.09000 * 109.47455 * 209.99919 * 3 2 1 30 30 H 1.09006 * 109.47016 * 330.00177 * 3 2 1 31 31 H 1.08996 * 109.46892 * 215.00324 * 4 2 1 32 32 H 1.09001 * 109.46811 * 334.99425 * 4 2 1 33 33 H 1.08997 * 109.46294 * 305.85181 * 6 5 4 34 34 H 1.09000 * 109.45877 * 65.82513 * 6 5 4 35 35 H 1.09004 * 109.50579 * 180.87705 * 7 6 5 36 36 H 1.09002 * 109.50609 * 60.76664 * 7 6 5 37 37 H 1.09000 * 109.52757 * 297.74850 * 8 7 6 38 38 H 0.96995 * 120.00363 * 265.28722 * 9 8 7 39 39 H 1.09003 * 109.46914 * 300.00271 * 12 10 9 40 40 H 1.09001 * 109.47039 * 60.00288 * 12 10 9 41 41 H 1.09003 * 109.47326 * 300.00474 * 13 12 10 42 42 H 1.09008 * 109.47242 * 60.00202 * 13 12 10 43 43 H 1.09003 * 109.46537 * 300.00398 * 14 13 12 44 44 H 1.09003 * 109.47165 * 59.99400 * 14 13 12 45 45 H 1.09003 * 109.46959 * 300.00121 * 15 14 13 46 46 H 1.08996 * 109.47277 * 59.99422 * 15 14 13 47 47 H 0.97004 * 119.99490 * 180.02562 * 19 18 16 48 48 H 1.09004 * 109.50229 * 182.40594 * 24 8 7 49 49 H 1.08998 * 109.50834 * 62.28426 * 24 8 7 50 50 H 1.09002 * 109.46060 * 294.17622 * 25 5 4 51 51 H 1.09006 * 109.45942 * 54.15282 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4129 -1.6682 -1.3804 6 6 2.9592 -0.5144 -2.1060 7 6 3.1749 -0.8889 -3.5741 8 6 4.1428 -2.0724 -3.6570 9 7 4.3092 -2.4734 -5.0563 10 6 5.2186 -1.8506 -5.8320 11 8 5.8993 -0.9587 -5.3716 12 6 5.3902 -2.2633 -7.2712 13 6 6.4767 -1.4049 -7.9218 14 6 6.6506 -1.8234 -9.3831 15 6 7.7376 -0.9654 -10.0336 16 6 7.9084 -1.3773 -11.4731 17 1 7.3025 -2.1719 -11.8829 18 6 8.8388 -0.7404 -12.2666 19 7 9.5770 0.2268 -11.7674 20 14 9.0510 -1.2514 -14.0507 21 1 8.1085 -2.3551 -14.3650 22 1 8.7686 -0.0920 -14.9347 23 1 10.4449 -1.7137 -14.2708 24 6 3.5731 -3.2447 -2.8533 25 6 3.3460 -2.8020 -1.4060 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0045 28 1 2.2452 1.6197 1.0277 29 1 3.0159 1.1748 -0.5138 30 1 1.4744 2.0648 -0.5138 31 1 2.9742 -1.1991 0.5889 32 1 1.4386 -2.0856 0.4335 33 1 2.2594 0.3189 -2.0428 34 1 3.9111 -0.2236 -1.6617 35 1 3.5950 -0.0371 -4.1090 36 1 2.2211 -1.1666 -4.0228 37 1 5.1089 -1.7827 -3.2437 38 1 3.7650 -3.1869 -5.4244 39 1 5.6805 -3.3130 -7.3160 40 1 4.4496 -2.1234 -7.8040 41 1 6.1860 -0.3553 -7.8770 42 1 7.4175 -1.5444 -7.3892 43 1 6.9411 -2.8730 -9.4282 44 1 5.7098 -1.6837 -9.9155 45 1 7.4475 0.0843 -9.9883 46 1 8.6782 -1.1056 -9.5011 47 1 10.2313 0.6751 -12.3258 48 1 4.2778 -4.0761 -2.8731 49 1 2.6256 -3.5595 -3.2905 50 1 4.2961 -2.5004 -0.9650 51 1 2.9269 -3.6302 -0.8345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588350116.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:17 Heat of formation + Delta-G solvation = -68.688713 kcal Electronic energy + Delta-G solvation = -24944.009444 eV Core-core repulsion = 21455.433003 eV Total energy + Delta-G solvation = -3488.576441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17828 -39.96642 -37.30534 -36.56162 -35.14678 -34.60226 -32.52674 -31.85039 -31.16601 -28.47965 -27.70680 -26.69243 -24.52622 -24.18073 -23.25621 -21.75380 -21.38071 -20.74641 -19.36319 -18.42886 -17.94388 -17.49964 -16.87998 -16.58755 -16.41236 -16.05209 -16.02771 -15.61111 -15.05252 -15.02694 -14.75727 -14.55066 -14.43356 -14.27203 -13.79054 -13.68293 -13.57159 -13.26634 -13.04316 -12.84266 -12.82246 -12.69669 -12.31659 -12.21414 -12.15159 -12.14314 -12.13387 -12.05863 -11.66365 -11.48758 -11.37286 -11.35119 -11.13830 -10.70301 -10.55826 -10.08168 -10.02888 -9.28174 -8.18851 -6.31054 1.28346 1.40413 1.41478 1.55009 1.67735 2.20664 2.42106 3.00386 3.13832 3.66116 3.75081 3.87561 3.92862 3.99195 4.06011 4.10780 4.16225 4.20404 4.36161 4.42534 4.52365 4.56234 4.59162 4.67028 4.69699 4.70723 4.75160 4.82173 4.85787 4.88010 4.88508 4.94289 5.02607 5.05457 5.10043 5.12911 5.19979 5.25556 5.33938 5.38143 5.54151 5.58823 5.70268 5.78214 5.88162 5.95514 6.03303 6.10654 6.25361 6.60921 6.87664 7.32180 7.38615 8.93595 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.034266 B = 0.001800 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.952289 B =15550.630897 C =15950.550614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.143 4.143 3 C -0.129 4.129 4 C 0.090 3.910 5 N -0.534 5.534 6 C 0.060 3.940 7 C -0.122 4.122 8 C 0.143 3.857 9 N -0.713 5.713 10 C 0.511 3.489 11 O -0.589 6.589 12 C -0.128 4.128 13 C -0.096 4.096 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.257 1.257 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.112 4.112 25 C 0.056 3.944 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.024 0.976 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.418 0.582 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.061 0.939 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.263 0.737 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.030 0.970 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.375 -8.270 26.392 34.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.185 4.185 4 C -0.037 4.037 5 N -0.259 5.259 6 C -0.068 4.068 7 C -0.161 4.161 8 C 0.038 3.962 9 N -0.366 5.366 10 C 0.299 3.701 11 O -0.469 6.469 12 C -0.168 4.168 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.150 4.150 25 C -0.072 4.072 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.255 0.745 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.002 0.998 46 H 0.003 0.997 47 H 0.071 0.929 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.048 0.952 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.184 -7.698 26.447 34.749 hybrid contribution 1.282 0.511 -0.601 1.506 sum -19.902 -7.187 25.845 33.402 Atomic orbital electron populations 1.23842 0.95005 1.02541 0.99607 1.21682 0.95864 0.95205 1.01604 1.21110 1.00180 0.94723 1.02502 1.21185 0.98652 0.95159 0.88721 1.62173 1.43020 1.06602 1.14118 1.22189 0.97775 0.93916 0.92913 1.21917 0.99857 0.97777 0.96538 1.20988 0.98152 0.95618 0.81456 1.45967 1.39789 1.39386 1.11428 1.21210 0.78608 0.81013 0.89243 1.90689 1.47621 1.32646 1.75969 1.21673 1.01869 1.02674 0.90546 1.21239 0.97933 0.98833 0.95383 1.21449 0.98735 0.99431 0.93701 1.19070 0.93748 0.94330 0.94821 1.21792 1.20076 1.18860 0.97158 0.91519 1.26112 0.95456 0.94982 1.03971 1.70147 1.24320 1.25176 1.38211 0.85314 0.78187 0.78469 0.78543 1.18060 1.20475 1.20468 1.21800 1.02457 0.96321 0.94408 1.22121 0.94123 0.94233 0.96702 0.87880 0.87706 0.90994 0.92256 0.91382 0.94324 0.89003 0.89423 0.95779 0.93528 0.90239 0.92639 0.74487 0.86287 0.86417 0.94041 0.93981 0.92020 0.92062 0.99762 0.99723 0.92873 0.89564 0.89110 0.95214 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 13.89 67.79 0.94 -0.98 16 2 C -0.14 -1.78 4.38 -16.48 -0.07 -1.85 16 3 C -0.13 -1.54 8.88 71.24 0.63 -0.91 16 4 C 0.09 1.08 5.46 85.56 0.47 1.55 16 5 N -0.53 -7.47 4.80 -900.92 -4.32 -11.79 16 6 C 0.06 1.03 4.00 86.33 0.34 1.37 16 7 C -0.12 -2.36 5.68 30.64 0.17 -2.18 16 8 C 0.14 2.66 2.52 45.07 0.11 2.77 16 9 N -0.71 -13.20 5.08 -442.14 -2.25 -15.44 16 10 C 0.51 13.97 7.80 87.66 0.68 14.66 16 11 O -0.59 -22.36 15.64 -3.03 -0.05 -22.41 16 12 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 13 C -0.10 -3.52 4.50 30.59 0.14 -3.38 16 14 C -0.10 -3.96 5.15 30.59 0.16 -3.80 16 15 C 0.02 0.97 4.97 29.85 0.15 1.12 16 16 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 17 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 18 C -0.01 -0.49 5.46 84.65 0.46 -0.02 16 19 N -0.94 -59.54 13.29 21.45 0.28 -59.26 16 20 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C -0.11 -1.31 5.57 30.65 0.17 -1.14 16 25 C 0.06 0.67 5.42 86.32 0.47 1.14 16 26 H 0.10 1.00 8.04 -2.91 -0.02 0.98 16 27 H 0.10 1.05 7.99 -2.91 -0.02 1.02 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.81 5.78 -2.39 -0.01 0.79 16 30 H 0.07 0.77 8.06 -2.38 -0.02 0.75 16 31 H 0.04 0.48 8.08 -2.39 -0.02 0.46 16 32 H 0.09 0.91 7.99 -2.39 -0.02 0.89 16 33 H 0.09 1.48 5.32 -2.39 -0.01 1.47 16 34 H 0.02 0.46 7.54 -2.39 -0.02 0.44 16 35 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 38 H 0.42 4.69 8.61 -92.71 -0.80 3.90 16 39 H 0.12 2.32 8.14 -2.39 -0.02 2.31 16 40 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 42 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 46 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 47 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 51 H 0.10 0.83 8.12 -2.38 -0.02 0.81 16 Total: -1.00 -75.89 401.22 1.00 -74.90 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.07 Total: 12.97 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 5.23 Total: -26.14 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -6.29 Total: -86.49 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.89 1.00 -74.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588350116.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.209 kcal (2) G-P(sol) polarization free energy of solvation -75.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds