Wall clock time and date at job start Fri Apr 10 2020 22:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47423 * 2 1 4 4 C 1.53001 * 109.47623 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.01242 * 304.50422 * 4 3 2 6 6 C 1.54264 * 110.02939 * 65.89066 * 4 3 2 7 7 C 1.54893 * 104.19561 * 142.94366 * 6 4 3 8 8 C 1.54887 * 102.74610 * 322.05876 * 7 6 4 9 9 C 1.53868 * 110.07282 * 183.08272 * 4 3 2 10 10 H 1.09003 * 110.02811 * 121.41268 * 9 4 3 11 11 C 1.50693 * 110.03651 * 359.97438 * 9 4 3 12 12 O 1.21279 * 120.00099 * 274.18690 * 11 9 4 13 13 N 1.34788 * 119.99945 * 94.18218 * 11 9 4 14 14 C 1.46503 * 119.99747 * 179.97438 * 13 11 9 15 15 C 1.53040 * 109.46174 * 275.06912 * 14 13 11 16 16 C 1.53187 * 109.31286 * 178.61604 * 15 14 13 17 17 N 1.46926 * 108.77350 * 54.63688 * 16 15 14 18 18 C 1.36937 * 120.63058 * 126.41353 * 17 16 15 19 19 H 1.07997 * 120.00340 * 328.82083 * 18 17 16 20 20 C 1.38812 * 119.99874 * 148.81972 * 18 17 16 21 21 N 1.31624 * 120.00158 * 164.75832 * 20 18 17 22 22 Si 1.86805 * 120.00338 * 344.75607 * 20 18 17 23 23 H 1.48491 * 109.46921 * 90.77340 * 22 20 18 24 24 H 1.48503 * 109.46994 * 210.77877 * 22 20 18 25 25 H 1.48504 * 109.46555 * 330.77484 * 22 20 18 26 26 C 1.46932 * 118.74184 * 306.38878 * 17 16 15 27 27 C 1.53043 * 109.45387 * 155.00142 * 14 13 11 28 28 H 1.09002 * 109.46566 * 60.00183 * 1 2 3 29 29 H 1.08992 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47220 * 300.00761 * 1 2 3 31 31 H 1.08993 * 109.47448 * 239.99579 * 2 1 3 32 32 H 1.09004 * 109.47179 * 119.99386 * 2 1 3 33 33 H 1.09010 * 109.47057 * 59.99362 * 3 2 1 34 34 H 1.08995 * 109.46937 * 300.00159 * 3 2 1 35 35 H 1.09000 * 110.49143 * 261.62720 * 6 4 3 36 36 H 1.09004 * 110.48507 * 24.26623 * 6 4 3 37 37 H 1.09004 * 110.75136 * 80.37131 * 7 6 4 38 38 H 1.08999 * 110.75495 * 203.74744 * 7 6 4 39 39 H 1.09005 * 110.48646 * 156.61836 * 8 7 6 40 40 H 1.08991 * 110.49129 * 279.25970 * 8 7 6 41 41 H 0.96996 * 119.99538 * 0.02562 * 13 11 9 42 42 H 1.08992 * 109.45798 * 35.03406 * 14 13 11 43 43 H 1.09004 * 109.49669 * 298.57308 * 15 14 13 44 44 H 1.08996 * 109.49689 * 58.66594 * 15 14 13 45 45 H 1.08996 * 109.58940 * 294.85016 * 16 15 14 46 46 H 1.09000 * 109.58706 * 174.42083 * 16 15 14 47 47 H 0.96992 * 120.00449 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.58562 * 293.82901 * 26 17 16 49 49 H 1.08992 * 109.58622 * 173.39608 * 26 17 16 50 50 H 1.08997 * 109.49893 * 301.33858 * 27 14 13 51 51 H 1.08998 * 109.49867 * 61.43552 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9428 0.8625 0.8449 6 6 4.0990 0.8503 -1.3219 7 6 5.3551 1.6982 -1.6423 8 6 4.9296 3.1202 -1.1997 9 6 4.0981 2.8857 0.0784 10 1 4.7272 3.0060 0.9604 11 6 2.9455 3.8551 0.1293 12 8 2.4332 4.2427 -0.8993 13 7 2.4839 4.2914 1.3182 14 6 1.3638 5.2343 1.3676 15 6 1.8920 6.6623 1.2125 16 6 0.7150 7.6426 1.2300 17 7 -0.0688 7.4186 2.4524 18 6 -0.3467 8.4554 3.3027 19 1 0.3512 9.2734 3.4033 20 6 -1.5257 8.4550 4.0355 21 7 -1.6649 9.2710 5.0588 22 14 -2.9149 7.2964 3.5693 23 1 -2.7640 6.0190 4.3112 24 1 -4.2172 7.9199 3.9167 25 1 -2.8677 7.0294 2.1092 26 6 -0.5491 6.0612 2.7449 27 6 0.6421 5.0986 2.7104 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 4.3694 -0.1973 -1.1898 36 1 3.3554 0.9566 -2.1119 37 1 6.2117 1.3535 -1.0630 38 1 5.5746 1.6753 -2.7097 39 1 5.8061 3.7291 -0.9782 40 1 4.3202 3.5930 -1.9698 41 1 2.8939 3.9817 2.1408 42 1 0.6682 5.0146 0.5578 43 1 2.5686 6.8913 2.0359 44 1 2.4260 6.7519 0.2666 45 1 0.0856 7.4736 0.3564 46 1 1.0913 8.6655 1.2196 47 1 -2.4888 9.2710 5.5706 48 1 -1.2815 5.7632 1.9947 49 1 -1.0068 6.0408 3.7339 50 1 0.2866 4.0752 2.8305 51 1 1.3304 5.3423 3.5196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590633534.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:28 Heat of formation + Delta-G solvation = -47.887339 kcal Electronic energy + Delta-G solvation = -27083.575906 eV Core-core repulsion = 23595.901481 eV Total energy + Delta-G solvation = -3487.674425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60426 -38.37757 -37.09474 -34.70958 -34.42618 -32.21959 -30.61253 -30.40020 -29.79824 -29.01298 -25.43511 -24.86225 -22.98954 -22.26452 -21.91212 -21.14285 -20.65174 -19.78272 -19.01381 -17.09176 -16.75172 -16.14026 -15.92153 -15.25751 -15.16472 -14.72342 -14.49374 -14.16145 -13.84012 -13.78692 -13.62166 -13.25915 -13.04883 -12.90149 -12.59372 -12.40887 -12.13405 -12.07382 -11.83423 -11.75823 -11.49374 -11.28578 -11.09443 -10.98612 -10.92414 -10.86032 -10.82517 -10.61907 -10.58018 -10.52002 -10.25646 -10.11000 -9.82696 -9.53875 -9.46307 -8.75845 -8.64170 -6.93729 -5.94789 -3.36493 2.75283 3.29692 3.30710 3.47541 3.50508 4.23903 4.34464 4.44236 4.51485 4.79192 4.86336 4.96645 5.01392 5.02679 5.18987 5.20421 5.25999 5.28240 5.32440 5.35685 5.40927 5.43272 5.47664 5.63378 5.67714 5.68755 5.69187 5.73967 5.82681 5.87296 5.91846 5.95216 6.03426 6.04446 6.11750 6.15184 6.17337 6.19750 6.26257 6.35244 6.41322 6.56501 6.65462 6.66236 6.78954 6.92770 7.67318 7.99461 8.34037 8.38015 8.93710 9.70787 10.09919 11.21385 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.003562 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.628834 B = 7858.464345 C = 8841.892973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.127 4.127 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.113 4.113 9 C -0.112 4.112 10 H 0.087 0.913 11 C 0.524 3.476 12 O -0.541 6.541 13 N -0.726 5.726 14 C 0.151 3.849 15 C -0.141 4.141 16 C 0.151 3.849 17 N -0.607 5.607 18 C -0.260 4.260 19 H 0.085 0.915 20 C 0.023 3.977 21 N -0.913 5.913 22 Si 0.888 3.112 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.269 1.269 26 C 0.128 3.872 27 C -0.140 4.140 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.396 0.604 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.025 0.975 46 H 0.065 0.935 47 H 0.263 0.737 48 H 0.028 0.972 49 H 0.076 0.924 50 H 0.057 0.943 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.760 -19.691 -10.120 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.151 4.151 9 C -0.134 4.134 10 H 0.105 0.895 11 C 0.310 3.690 12 O -0.418 6.418 13 N -0.376 5.376 14 C 0.048 3.952 15 C -0.181 4.181 16 C 0.025 3.975 17 N -0.331 5.331 18 C -0.388 4.388 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.556 5.556 22 Si 0.719 3.281 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.194 1.194 26 C 0.001 3.999 27 C -0.180 4.180 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.229 0.771 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.046 0.954 49 H 0.094 0.906 50 H 0.076 0.924 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.258 -19.302 -10.726 25.256 hybrid contribution -0.624 -0.734 0.466 1.070 sum 11.634 -20.035 -10.259 25.338 Atomic orbital electron populations 1.21775 0.95896 1.01324 1.02133 1.21502 0.95888 0.96687 1.01660 1.21955 0.94095 0.97179 1.03267 1.21690 0.95773 0.93224 0.98713 0.90442 1.22446 0.97360 0.98771 0.96881 1.22482 0.97568 0.95013 1.01040 1.22360 0.98939 0.97361 0.96420 1.22052 0.95674 0.94819 1.00835 0.89455 1.20369 0.84239 0.80688 0.83656 1.90673 1.59292 1.58402 1.33460 1.46384 1.36038 1.47048 1.08147 1.20949 0.87214 0.88395 0.98674 1.22372 0.99732 0.94924 1.01054 1.20903 0.90945 0.97135 0.88566 1.44377 1.62755 1.03537 1.22442 1.18932 1.01918 1.00922 1.17048 0.89748 1.25380 0.97296 0.97354 0.97510 1.69782 1.27145 1.40047 1.18633 0.86887 0.82266 0.79688 0.79240 1.21587 1.23166 1.19402 1.21349 0.93614 0.85007 0.99899 1.22335 0.99835 0.99616 0.96186 0.92722 0.92958 0.92667 0.92073 0.92315 0.91560 0.90734 0.91651 0.91169 0.91583 0.91394 0.91543 0.89557 0.77091 0.90062 0.91954 0.92336 0.95741 0.91619 0.92737 0.95433 0.90631 0.92385 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.05 5.77 -26.73 -0.15 -1.20 16 3 C -0.13 -1.30 3.39 -26.73 -0.09 -1.39 16 4 C -0.08 -0.65 2.95 -89.51 -0.26 -0.92 16 5 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 6 C -0.12 -0.93 5.44 -25.07 -0.14 -1.07 16 7 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 8 C -0.11 -1.08 6.31 -25.07 -0.16 -1.24 16 9 C -0.11 -1.10 3.29 -90.66 -0.30 -1.39 16 10 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 11 C 0.52 6.90 4.66 -10.98 -0.05 6.85 16 12 O -0.54 -9.17 14.61 5.56 0.08 -9.08 16 13 N -0.73 -9.28 4.60 -53.76 -0.25 -9.52 16 14 C 0.15 2.43 2.42 -67.89 -0.16 2.26 16 15 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 16 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 17 N -0.61 -14.44 2.74 -172.32 -0.47 -14.91 16 18 C -0.26 -7.27 10.04 -15.06 -0.15 -7.42 16 19 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 20 C 0.02 0.68 5.30 -17.43 -0.09 0.59 16 21 N -0.91 -28.02 13.97 55.49 0.78 -27.25 16 22 Si 0.89 22.47 24.29 -169.99 -4.13 18.34 16 23 H -0.29 -6.95 6.61 56.52 0.37 -6.58 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.27 -6.72 6.46 56.52 0.37 -6.35 16 26 C 0.13 2.74 4.16 -3.71 -0.02 2.72 16 27 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.50 7.44 -51.93 -0.39 0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.74 6.98 -51.92 -0.36 0.38 16 34 H 0.07 0.95 7.01 -51.93 -0.36 0.59 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.03 6.89 -51.93 -0.36 0.67 16 41 H 0.40 4.08 8.60 -40.82 -0.35 3.73 16 42 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.03 0.60 6.88 -51.93 -0.36 0.24 16 49 H 0.08 1.76 4.59 -51.93 -0.24 1.52 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -31.59 378.84 -9.57 -41.17 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -9.59 Total: 1.96 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.70 Total: -6.41 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.06 Total: -51.68 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.13 Total: 18.34 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.59 -9.57 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590633534.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.721 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds