Wall clock time and date at job start Fri Apr 10 2020 22:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 5 5 C 1.50699 * 109.47240 * 60.00091 * 4 2 1 6 6 H 1.08003 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46755 * 90.00221 * 9 7 5 11 11 H 1.48494 * 109.47308 * 209.99919 * 9 7 5 12 12 H 1.48496 * 109.47178 * 330.00271 * 9 7 5 13 13 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 14 14 N 1.46506 * 109.46684 * 300.00056 * 13 2 1 15 15 C 1.34777 * 119.99873 * 180.02562 * 14 13 2 16 16 O 1.21592 * 119.99797 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99902 * 179.97438 * 15 14 13 18 18 C 1.47017 * 125.65079 * 0.02563 * 17 15 14 19 19 C 1.54320 * 107.27359 * 178.90328 * 18 17 15 20 20 C 1.55156 * 102.94329 * 337.80389 * 19 18 17 21 21 H 1.09003 * 111.00426 * 277.43295 * 20 19 18 22 22 C 1.53001 * 111.00525 * 153.61310 * 20 19 18 23 23 C 1.53786 * 113.61153 * 157.50111 * 22 20 19 24 24 C 1.53782 * 87.07482 * 220.01983 * 23 22 20 25 25 C 1.53777 * 113.61164 * 60.00396 * 22 20 19 26 26 C 1.47424 * 125.64802 * 179.71422 * 17 15 14 27 27 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 28 28 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 29 29 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 32 32 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 33 33 H 1.09000 * 109.46866 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.47261 * 299.99767 * 4 2 1 35 35 H 0.96992 * 120.00032 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47486 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.47362 * 59.99268 * 13 2 1 38 38 H 0.96995 * 120.00050 * 359.72237 * 14 13 2 39 39 H 1.09005 * 109.88208 * 298.31943 * 18 17 15 40 40 H 1.09000 * 109.88577 * 59.32386 * 18 17 15 41 41 H 1.08999 * 110.72292 * 96.16574 * 19 18 17 42 42 H 1.09001 * 110.72376 * 219.44129 * 19 18 17 43 43 H 1.08995 * 112.84851 * 288.80576 * 22 20 19 44 44 H 1.08994 * 113.61279 * 334.56234 * 23 22 20 45 45 H 1.09000 * 113.61620 * 105.47120 * 23 22 20 46 46 H 1.09008 * 113.61541 * 270.87745 * 24 23 22 47 47 H 1.09002 * 113.68793 * 139.99297 * 24 23 22 48 48 H 1.09007 * 113.61308 * 254.52420 * 25 22 20 49 49 H 1.08992 * 113.61864 * 25.34824 * 25 22 20 50 50 H 1.09009 * 110.36473 * 323.00294 * 26 17 15 51 51 H 1.09000 * 110.36746 * 85.32623 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9171 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 2.2254 1.4411 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0607 1.0353 -4.9614 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5767 -1.4795 3.7810 17 7 1.4288 0.1447 4.7699 18 6 0.5796 1.3448 4.7798 19 6 0.2985 1.6950 6.2562 20 6 0.5365 0.3460 6.9848 21 1 -0.3459 -0.2912 6.9253 22 6 0.9475 0.5741 8.4408 23 6 0.6743 -0.6325 9.3543 24 6 0.2242 0.3781 10.4224 25 6 -0.1031 1.3364 9.2652 26 6 1.7027 -0.2520 6.1631 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7216 -1.2491 34 1 1.6767 -1.7489 -1.2494 35 1 2.8615 -1.8822 -4.7337 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.9973 0.7603 2.3564 39 1 1.0999 2.1711 4.2954 40 1 -0.3565 1.1409 4.2600 41 1 0.9955 2.4537 6.6121 42 1 -0.7321 2.0261 6.3846 43 1 1.9554 0.9775 8.5378 44 1 -0.1288 -1.2773 8.9974 45 1 1.5729 -1.1857 9.6275 46 1 1.0347 0.7270 11.0625 47 1 -0.6524 0.0584 10.9859 48 1 0.1679 2.3729 9.4667 49 1 -1.1185 1.2310 8.8832 50 1 1.7129 -1.3383 6.2532 51 1 2.6524 0.1661 6.4969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591195396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:45 Heat of formation + Delta-G solvation = -33.073849 kcal Electronic energy + Delta-G solvation = -25919.610164 eV Core-core repulsion = 22432.578100 eV Total energy + Delta-G solvation = -3487.032064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46231 -39.30192 -37.53945 -36.59327 -33.57484 -32.24852 -31.41898 -29.49600 -27.13839 -26.49071 -26.45363 -25.95146 -24.98069 -23.29187 -22.45769 -20.90660 -19.93664 -19.66799 -18.63729 -17.51045 -16.54864 -16.28738 -15.93848 -15.57312 -15.07398 -14.56584 -14.50410 -14.13220 -13.78629 -13.70501 -13.31479 -13.24268 -12.85660 -12.80408 -12.73074 -12.70231 -12.34017 -12.05059 -12.02834 -12.01590 -11.34762 -11.12759 -11.07843 -10.99897 -10.85651 -10.84101 -10.61853 -10.46240 -10.44772 -10.36983 -10.23252 -9.97372 -9.85206 -9.18171 -8.90869 -8.85285 -8.38243 -8.34269 -5.98301 -3.99573 2.74432 3.31731 3.38693 3.40452 3.41948 3.93647 4.23053 4.23240 4.24742 4.43576 4.46814 4.49041 4.73735 4.81622 5.00430 5.03809 5.22656 5.36042 5.37011 5.37037 5.38595 5.46658 5.51439 5.52668 5.55366 5.60495 5.66088 5.68280 5.77555 5.78124 5.83457 5.97601 6.15236 6.15737 6.20202 6.27686 6.35673 6.44239 6.63117 6.64898 6.84600 7.08664 7.09612 7.14815 7.20112 7.66505 7.79003 8.00472 8.17768 8.42364 8.82488 9.05200 9.63298 11.13120 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.040728 B = 0.002269 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.315804 B =12336.396262 C =12727.739720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.146 3.854 14 N -0.734 5.734 15 C 0.717 3.283 16 O -0.592 6.592 17 N -0.642 5.642 18 C 0.098 3.902 19 C -0.121 4.121 20 C -0.092 4.092 21 H 0.085 0.915 22 C -0.099 4.099 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.134 4.134 26 C 0.132 3.868 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.393 0.607 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 7.981 26.367 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.023 3.977 14 N -0.390 5.390 15 C 0.419 3.581 16 O -0.471 6.471 17 N -0.381 5.381 18 C -0.025 4.025 19 C -0.159 4.159 20 C -0.111 4.111 21 H 0.103 0.897 22 C -0.118 4.118 23 C -0.176 4.176 24 C -0.182 4.182 25 C -0.171 4.171 26 C 0.009 3.991 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.228 0.772 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.094 0.906 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.044 7.071 26.191 27.794 hybrid contribution -0.540 0.831 -1.049 1.443 sum -6.584 7.902 25.142 27.164 Atomic orbital electron populations 1.21747 0.95332 1.01146 1.00075 1.20911 0.95448 0.95852 0.95050 1.21750 1.00554 0.95934 1.00075 1.19089 0.96390 0.95249 0.89403 1.21179 1.31147 1.12019 0.90514 0.92274 1.25024 0.95373 0.95102 0.99091 1.69968 1.36983 1.22985 1.23409 0.86640 0.79151 0.79388 0.83068 1.20802 1.21361 1.19974 1.21499 0.98665 0.95660 0.81874 1.45378 1.56209 1.33001 1.04373 1.15539 0.80280 0.82440 0.79831 1.90916 1.43026 1.27560 1.85554 1.47567 1.55020 1.30292 1.05266 1.21978 0.94677 0.87912 0.97957 1.22606 1.02544 0.97473 0.93277 1.22374 0.98463 0.96668 0.93618 0.89704 1.22486 0.99579 0.97604 0.92081 1.22982 1.01652 0.96326 0.96598 1.22818 1.01320 0.97579 0.96486 1.22903 0.99279 0.98511 0.96454 1.21997 0.97160 1.00605 0.79328 0.95413 0.91466 0.93355 0.93352 0.91462 0.95417 0.96303 0.96291 0.93055 0.92034 0.92017 0.77153 0.91707 0.91741 0.90437 0.90079 0.88919 0.89991 0.91396 0.90303 0.91576 0.91537 0.90053 0.90564 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.15 2.73 4.56 -4.04 -0.02 2.72 16 14 N -0.73 -11.67 4.92 -65.22 -0.32 -11.99 16 15 C 0.72 12.13 8.49 -86.92 -0.74 11.39 16 16 O -0.59 -12.48 16.60 5.28 0.09 -12.39 16 17 N -0.64 -8.16 3.33 -176.38 -0.59 -8.75 16 18 C 0.10 0.89 6.15 -3.07 -0.02 0.87 16 19 C -0.12 -0.79 5.99 -24.90 -0.15 -0.94 16 20 C -0.09 -0.67 2.82 -88.59 -0.25 -0.92 16 21 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 22 C -0.10 -0.60 3.23 -89.81 -0.29 -0.89 16 23 C -0.14 -0.83 7.64 -25.92 -0.20 -1.03 16 24 C -0.14 -0.77 8.08 -25.92 -0.21 -0.97 16 25 C -0.13 -0.70 7.19 -25.92 -0.19 -0.88 16 26 C 0.13 1.41 6.37 -2.65 -0.02 1.39 16 27 H 0.03 0.41 6.87 -51.93 -0.36 0.05 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.39 5.37 5.15 -40.82 -0.21 5.16 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.57 7.99 -51.93 -0.41 0.15 16 44 H 0.08 0.50 7.95 -51.93 -0.41 0.09 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 49 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 50 H 0.08 0.92 8.04 -51.92 -0.42 0.50 16 51 H 0.06 0.65 7.92 -51.93 -0.41 0.23 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -31.87 391.22 -10.69 -42.56 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -9.45 Total: 0.56 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.03 Total: -6.33 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.17 Total: -46.58 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.87 -10.69 -42.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591195396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.489 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds